mRNA_Ecto-sp13_S_contig14438.3412.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14438.3412.1
Unique NamemRNA_Ecto-sp13_S_contig14438.3412.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14438.3412.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.920e-60
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 GMEHPFSKTEDHRITACLAVVSYCSLGCGVKVRKMDVDLHQEKHCERKTLRTLSKMIDCPLGCGHLILRQWEFQHRTFDCPKRPALCPRGCSA 279
            GMEHPFSKTEDHRITACLAVVSYCSLGCGVKVRKMD+DLHQEKHCERKTLRTLSKMIDCPLGCGHLILRQWEFQHRTFDCPKRPALCPRGCSA
Sbjct:  187 GMEHPFSKTEDHRITACLAVVSYCSLGCGVKVRKMDMDLHQEKHCERKTLRTLSKMIDCPLGCGHLILRQWEFQHRTFDCPKRPALCPRGCSA 279
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BLAST of mRNA_Ecto-sp13_S_contig14438.3412.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.470e-58
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    1 GMEHPFSKTEDHRITACLAVVSYCSLGCGVKVRKMDVDLHQEKHCERKTLRTLSKMIDCPLGCGHLILRQWEFQHRTFDCPKRPALCPRGCSA 279
            GMEHPFSKT DHRIT CLAVVSYCSLGCGVKVRKMDVDLHQEK+CERKTLRTLSKMIDCPLGCGHLILRQWEFQHRTFDCPKRPALCPRGCSA
Sbjct:  754 GMEHPFSKTGDHRITTCLAVVSYCSLGCGVKVRKMDVDLHQEKYCERKTLRTLSKMIDCPLGCGHLILRQWEFQHRTFDCPKRPALCPRGCSA 846
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14438.3412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW96_ECTSI1.920e-6098.92Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L2H6_9PHAE1.470e-5896.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14438contigEcto-sp13_S_contig14438:2322..3745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score206.8
Seed ortholog evalue4.2e-51
Seed eggNOG ortholog2880.D7FW96
Model size279
KEGG koko:K08873
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.TNF receptor-associated factor
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EC2.7.11.1
Cds size276
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.5154061-CDS-Ecto-sp13_S_contig14438:2321..24771681462770.5154061-CDS-Ecto-sp13_S_contig14438:2321..2477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14438 2322..2477 -
1681462770.5252945-CDS-Ecto-sp13_S_contig14438:3028..31131681462770.5252945-CDS-Ecto-sp13_S_contig14438:3028..3113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14438 3029..3113 -
1681462770.5336678-CDS-Ecto-sp13_S_contig14438:3707..37421681462770.5336678-CDS-Ecto-sp13_S_contig14438:3707..3742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14438 3708..3742 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.5418622-UTR-Ecto-sp13_S_contig14438:3742..37451681462770.5418622-UTR-Ecto-sp13_S_contig14438:3742..3745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14438 3743..3745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14438.3412.1prot_Ecto-sp13_S_contig14438.3412.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14438 2322..3742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14438.3412.1

>prot_Ecto-sp13_S_contig14438.3412.1 ID=prot_Ecto-sp13_S_contig14438.3412.1|Name=mRNA_Ecto-sp13_S_contig14438.3412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MEHPFSKTEDHRITACLAVVSYCSLGCGVKVRKMDVDLHQEKHCERKTLR
TLSKMIDCPLGCGHLILRQWEFQHRTFDCPKRPALCPRGCSA
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mRNA from alignment at Ecto-sp13_S_contig14438:2322..3745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14438.3412.1 ID=mRNA_Ecto-sp13_S_contig14438.3412.1|Name=mRNA_Ecto-sp13_S_contig14438.3412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14438:2322..3745- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATGGAGCACCCCTTCTCCAAGACCGAAGATCACAGGTACATCAGATG
TAGTACAGCCCGCGGTGTGTATGTTAGTGATGCGCGCTCGGCTGCTTCCA
CATTGAAAGAAGACGCCTCAGACCGTCATCAGGTATGTTCGCATAGGCTA
TTCCCCACAATAATACTACGAGAAAGACTGATAAGTCTCTGGACTTACGA
AGAAAAAAGAGAGATCAGACTCGAAATAACATGCAAGAGGCGGAGCACAG
GCATGTATTGAGGTCATCGAGGTTTTGGGTTTGTGCTACAACCCTCTTCA
AGACGGTCACACACTGTCGGGTCTGTACCACATACAGACGGTGTTTTGTT
TCTCTATTCCAAGGCCAACCTGCTGCGTGCACAACCTTATGGCTCGGTGA
AACAACGTTCGCGAAACTTGCGAGGATTACCGCACGGAACGCGACAGGAG
TTGGAGTGTCATCTTTTTTCCTTTCGACACTCATATCCCCGCTCCACAAA
ATTCTCCGGATGCTGAAACGGCTTCCGGTAGTTTCCGTCACGTTCGTTGT
GTTTCAAAATCGAACCAACTTTTTTGTCCTACTAGCACCAACCAACCCAC
CAACTTGCTGTTTCTCACTCTTGATCTTCCAGGATTACGGCGTGTCTCGC
AGTGGTGTCCTACTGTTCTCTAGGGTGCGGGGTCAAGGTCCGCAAGATGG
ACGTGGACCTTCACCAGGTATCTCATATCTGTCTTCATCAGCACCGCGAA
ATATACACACGACGTCAGGCAAAATGGTTTTGTTTCTGCACACCGATGAG
CCAGCCATCTCTCGAACAACCATCGGTGTTTTCAACGTGTTCGCGGTTCA
GTAGGTATCCGGAACGCACGTTCTATCATAGTCGGCTTGATATAGCGGCT
GAATGACTAGATGTTACGACCTCACCAGGGCGAAAACAAGCACCATCACA
AGGGGAAACACGTGAAGAGAACATGAGGAAATCAACATGATGCAGGTTCT
TGTTTCACGGCGTCAACCCTTCACGAAAGCAGGCGCAGAACATTAGCTGC
TCTTGTCAGCGAGGGCTTGCTCGGGAAAGAGCAGAGCCGCCAAGGTCAAT
TGATGCAGCGTTCCGGTCGTTCAATTCTACCCCCGATCATCGCTTCAGTT
CACACGACCAAAATGGAGGGAATAAGCCCCTCTTCAGCCCTCACCCCCAT
CAACCGTCCTCTCAACCTCCCCCACGCCACCGGTCAATCAATCGCGGGTA
CGGATACACCGCACACAGGAAAAGCACTGCGAGCGCAAGACCCTGCGTAC
CTTGAGCAAGATGATCGACTGCCCCCTTGGTTGCGGGCACCTTATTCTAC
GGCAGTGGGAGTTCCAGCACCGCACGTTCGACTGCCCCAAGCGGCCGGCG
TTGTGCCCACGGGGGTGCTCCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14438:2322..3745-

>mRNA_Ecto-sp13_S_contig14438.3412.1 ID=mRNA_Ecto-sp13_S_contig14438.3412.1|Name=mRNA_Ecto-sp13_S_contig14438.3412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14438:2322..3745- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCACCCCTTCTCCAAGACCGAAGATCACAGGATTACGGCGTGTCT
CGCAGTGGTGTCCTACTGTTCTCTAGGGTGCGGGGTCAAGGTCCGCAAGA
TGGACGTGGACCTTCACCAGGAAAAGCACTGCGAGCGCAAGACCCTGCGT
ACCTTGAGCAAGATGATCGACTGCCCCCTTGGTTGCGGGCACCTTATTCT
ACGGCAGTGGGAGTTCCAGCACCGCACGTTCGACTGCCCCAAGCGGCCGG
CGTTGTGCCCACGGGGGTGCTCCGCG
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