mRNA_Ecto-sp13_S_contig14437.3410.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14437.3410.1
Unique NamemRNA_Ecto-sp13_S_contig14437.3410.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14437.3410.1 vs. uniprot
Match: A0A6H5LBA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA6_9PHAE)

HSP 1 Score: 568 bits (1464), Expect = 1.960e-191
Identity = 414/559 (74.06%), Postives = 430/559 (76.92%), Query Frame = 1 
Query:    1 MSETPASGPCGLVAGCTGDKQVTVITQEQLNGLGSLRDVDLFVKLSALRVGGIWCEDCHQLLFNAASGSKQXXXXXXXQPETGRKRDHAETMTHERPQPQPLVAAPGDTRESAGHGLAAVRGNTPSDAAATPQAAXXXXXXXXXXXXXXXXPVEEADKPRYSDSATYPSPPAEPEVNLAAALPPSVENGPGGGSAGGATGQALMPSALPAGTGSTTLVSLAAGGGHEASVTHAAPAAA-PLPGARQPMPMAGVATXXXXXXXXXXXXXXXXXXXXXXTGQAVALYGATPVSGVPQAALWPQQTVLPLAGHQQQLLPQQALQMAAISAATSAMES-HQLPPLQXXXXXXXXXXXXXXXXXXXXXXXLVXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGLPGGTVIRVGPAGAPAGGPAVSTHEAVLTLQGQQQQHHEMGVSAVAQPAVAHP---PGEGAPTSPTASIHGTPAAIGQVPYPVWMGPVLPEQQQDSRGTGXXXXXXXXXXXXSGVMGGGXXXXXXXXGGIDLNGRLLQHPAYVMHAGGSAESLETAERRRQE 1662
            MSETPA GPCGLVAGC GDKQVT ITQEQLNGLGSLRDVDLFVKLSALRVGGIWCEDCHQLLFNAASGSKQ       QPE+GRKRDHAETMTHERPQPQPLVA PGDTRE  GHGLAA+RGNTPSDAA+TPQAA XXXXXXXXXXXX   PVEEAD   YSDSA YPSPPA PEVNLAAALPPS+ENG GG SAGGATGQALMP ALPAGTGSTTLVS AA GG+EASV  AA AAA PLPGA QP+P+AGVAT   XXXXXXXXXXXXXXXXXXX   AVALYGATPVSGVPQAALW                PQQALQMAA+ AATSAME+ +QLPPLQ  XXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXX               AGAGL GGTVIRVGPAGAPAGGPAVS HE V+ L                          PGEGAPTSPTASIHG PAA+GQ+PYPVWMGPVLP+QQQDS+G G            SGVMGG         GGIDLNGRLLQHPAYVMHAGG+ ESLETAERRRQE
Sbjct:    1 MSETPAVGPCGLVAGCAGDKQVTFITQEQLNGLGSLRDVDLFVKLSALRVGGIWCEDCHQLLFNAASGSKQQQQL---QPESGRKRDHAETMTHERPQPQPLVAPPGDTREPVGHGLAAMRGNTPSDAASTPQAATXXXXXXXXXXXX---PVEEADGSTYSDSAPYPSPPAAPEVNLAAALPPSIENGAGGESAGGATGQALMPPALPAGTGSTTLVSPAAEGGNEASVAQAAAAAAAPLPGASQPVPLAGVATATQXXXXXXXXXXXXXXXXXXXXXXAVALYGATPVSGVPQAALW----------------PQQALQMAAMEAATSAMEAANQLPPLQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------AGAGLLGGTVIRVGPAGAPAGGPAVSMHETVVPLXXXXXXXXXXXXXXXXXXXXXXXXXGPGEGAPTSPTASIHGAPAAVGQLPYPVWMGPVLPQQQQDSQGAGGSGVSARSPKSRSGVMGGRKGVGLGGGGGIDLNGRLLQHPAYVMHAGGALESLETAERRRQE 522
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14437.3410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LBA6_9PHAE1.960e-19174.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14437contigEcto-sp13_S_contig14437:714..2378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1665
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-22_003550.1
Cds size1665
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.4480171-CDS-Ecto-sp13_S_contig14437:713..23781681462770.4480171-CDS-Ecto-sp13_S_contig14437:713..2378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14437 714..2378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14437.3410.1prot_Ecto-sp13_S_contig14437.3410.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14437 714..2378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14437.3410.1

>prot_Ecto-sp13_S_contig14437.3410.1 ID=prot_Ecto-sp13_S_contig14437.3410.1|Name=mRNA_Ecto-sp13_S_contig14437.3410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=555bp
MSETPASGPCGLVAGCTGDKQVTVITQEQLNGLGSLRDVDLFVKLSALRV
GGIWCEDCHQLLFNAASGSKQQQQQQQLQPETGRKRDHAETMTHERPQPQ
PLVAAPGDTRESAGHGLAAVRGNTPSDAAATPQAATASAAAAAAAAAAAA
APVEEADKPRYSDSATYPSPPAEPEVNLAAALPPSVENGPGGGSAGGATG
QALMPSALPAGTGSTTLVSLAAGGGHEASVTHAAPAAAPLPGARQPMPMA
GVATATQAALPLAGAPYALPLYGTAPTGQAVALYGATPVSGVPQAALWPQ
QTVLPLAGHQQQLLPQQALQMAAISAATSAMESHQLPPLQQHQPPPQLQA
ALQHHSAPQQQQQLVQQQQLVQQQQLVQQQQQQQQQQQQQQAGAGLPGGT
VIRVGPAGAPAGGPAVSTHEAVLTLQGQQQQHHEMGVSAVAQPAVAHPPG
EGAPTSPTASIHGTPAAIGQVPYPVWMGPVLPEQQQDSRGTGGSGVSARS
PKSPSGVMGGGRGGGLGGGGGIDLNGRLLQHPAYVMHAGGSAESLETAER
RRQE*
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mRNA from alignment at Ecto-sp13_S_contig14437:714..2378+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14437.3410.1 ID=mRNA_Ecto-sp13_S_contig14437.3410.1|Name=mRNA_Ecto-sp13_S_contig14437.3410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1665bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14437:714..2378+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGAAACGCCCGCGTCAGGCCCATGCGGGCTTGTGGCCGGGTGCAC
TGGCGACAAGCAGGTGACTGTCATCACCCAGGAGCAGCTGAACGGGCTTG
GCTCATTGCGCGACGTCGACTTGTTCGTGAAGCTGTCCGCCCTGCGGGTG
GGCGGGATCTGGTGCGAGGATTGCCACCAGTTGCTTTTCAACGCCGCGTC
CGGCAGCAAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCCTGAAACCGGCC
GGAAGCGAGACCACGCAGAGACGATGACACACGAGCGGCCACAACCACAG
CCCCTCGTCGCCGCGCCTGGAGACACCCGAGAGTCCGCAGGCCACGGACT
CGCCGCCGTCCGGGGGAACACACCATCGGACGCAGCGGCGACACCGCAGG
CGGCAACGGCGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
GCGCCCGTCGAAGAGGCGGATAAACCCAGGTATTCCGATTCCGCCACGTA
CCCATCCCCGCCGGCGGAGCCAGAGGTGAACTTGGCAGCGGCGCTGCCGC
CGTCCGTAGAGAACGGCCCCGGCGGAGGAAGCGCCGGCGGGGCCACCGGG
CAAGCTTTGATGCCCTCGGCCCTCCCTGCGGGGACGGGGTCCACGACGCT
GGTATCCCTTGCTGCGGGGGGCGGGCACGAGGCAAGCGTCACCCACGCGG
CGCCGGCGGCGGCACCGTTGCCAGGCGCACGCCAACCTATGCCGATGGCG
GGCGTAGCAACAGCGACCCAGGCAGCGCTACCTCTAGCCGGGGCACCCTA
CGCCTTGCCTCTGTACGGTACGGCTCCGACGGGTCAGGCGGTGGCTTTGT
ACGGTGCGACCCCGGTGTCCGGTGTACCCCAGGCGGCGCTGTGGCCGCAG
CAGACGGTGTTGCCCCTGGCGGGCCACCAGCAGCAGCTACTGCCGCAACA
GGCGCTCCAGATGGCGGCGATCTCGGCGGCGACGTCGGCGATGGAGTCGC
ACCAGCTGCCCCCGCTCCAGCAGCACCAACCCCCCCCGCAGCTACAGGCC
GCCCTGCAGCACCACTCCGCTCCGCAGCAGCAGCAGCAACTCGTCCAGCA
GCAGCAACTCGTCCAGCAGCAGCAACTCGTCCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGGCGGGAGCAGGGCTCCCCGGCGGGACC
GTCATCCGCGTCGGCCCGGCCGGGGCCCCCGCGGGTGGCCCCGCCGTATC
AACGCACGAGGCAGTCCTAACCCTCCAGGGGCAACAACAGCAGCATCACG
AGATGGGGGTGAGCGCCGTCGCCCAGCCCGCGGTTGCCCACCCACCCGGC
GAGGGCGCACCTACCTCTCCAACGGCGTCCATCCACGGGACCCCTGCGGC
CATAGGGCAGGTGCCCTACCCGGTGTGGATGGGGCCGGTGCTGCCCGAGC
AGCAGCAAGATAGCAGAGGCACGGGGGGCTCCGGTGTTTCGGCCCGCAGC
CCCAAGTCGCCGTCGGGTGTGATGGGGGGGGGGAGAGGGGGGGGGTTGGG
TGGTGGCGGTGGAATTGATCTGAATGGTCGGCTCTTGCAACACCCCGCCT
ACGTGATGCACGCGGGGGGATCAGCGGAGTCGCTTGAGACGGCGGAAAGG
CGAAGACAGGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14437:714..2378+

>mRNA_Ecto-sp13_S_contig14437.3410.1 ID=mRNA_Ecto-sp13_S_contig14437.3410.1|Name=mRNA_Ecto-sp13_S_contig14437.3410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1665bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14437:714..2378+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGAAACGCCCGCGTCAGGCCCATGCGGGCTTGTGGCCGGGTGCAC
TGGCGACAAGCAGGTGACTGTCATCACCCAGGAGCAGCTGAACGGGCTTG
GCTCATTGCGCGACGTCGACTTGTTCGTGAAGCTGTCCGCCCTGCGGGTG
GGCGGGATCTGGTGCGAGGATTGCCACCAGTTGCTTTTCAACGCCGCGTC
CGGCAGCAAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCCTGAAACCGGCC
GGAAGCGAGACCACGCAGAGACGATGACACACGAGCGGCCACAACCACAG
CCCCTCGTCGCCGCGCCTGGAGACACCCGAGAGTCCGCAGGCCACGGACT
CGCCGCCGTCCGGGGGAACACACCATCGGACGCAGCGGCGACACCGCAGG
CGGCAACGGCGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
GCGCCCGTCGAAGAGGCGGATAAACCCAGGTATTCCGATTCCGCCACGTA
CCCATCCCCGCCGGCGGAGCCAGAGGTGAACTTGGCAGCGGCGCTGCCGC
CGTCCGTAGAGAACGGCCCCGGCGGAGGAAGCGCCGGCGGGGCCACCGGG
CAAGCTTTGATGCCCTCGGCCCTCCCTGCGGGGACGGGGTCCACGACGCT
GGTATCCCTTGCTGCGGGGGGCGGGCACGAGGCAAGCGTCACCCACGCGG
CGCCGGCGGCGGCACCGTTGCCAGGCGCACGCCAACCTATGCCGATGGCG
GGCGTAGCAACAGCGACCCAGGCAGCGCTACCTCTAGCCGGGGCACCCTA
CGCCTTGCCTCTGTACGGTACGGCTCCGACGGGTCAGGCGGTGGCTTTGT
ACGGTGCGACCCCGGTGTCCGGTGTACCCCAGGCGGCGCTGTGGCCGCAG
CAGACGGTGTTGCCCCTGGCGGGCCACCAGCAGCAGCTACTGCCGCAACA
GGCGCTCCAGATGGCGGCGATCTCGGCGGCGACGTCGGCGATGGAGTCGC
ACCAGCTGCCCCCGCTCCAGCAGCACCAACCCCCCCCGCAGCTACAGGCC
GCCCTGCAGCACCACTCCGCTCCGCAGCAGCAGCAGCAACTCGTCCAGCA
GCAGCAACTCGTCCAGCAGCAGCAACTCGTCCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGGCGGGAGCAGGGCTCCCCGGCGGGACC
GTCATCCGCGTCGGCCCGGCCGGGGCCCCCGCGGGTGGCCCCGCCGTATC
AACGCACGAGGCAGTCCTAACCCTCCAGGGGCAACAACAGCAGCATCACG
AGATGGGGGTGAGCGCCGTCGCCCAGCCCGCGGTTGCCCACCCACCCGGC
GAGGGCGCACCTACCTCTCCAACGGCGTCCATCCACGGGACCCCTGCGGC
CATAGGGCAGGTGCCCTACCCGGTGTGGATGGGGCCGGTGCTGCCCGAGC
AGCAGCAAGATAGCAGAGGCACGGGGGGCTCCGGTGTTTCGGCCCGCAGC
CCCAAGTCGCCGTCGGGTGTGATGGGGGGGGGGAGAGGGGGGGGGTTGGG
TGGTGGCGGTGGAATTGATCTGAATGGTCGGCTCTTGCAACACCCCGCCT
ACGTGATGCACGCGGGGGGATCAGCGGAGTCGCTTGAGACGGCGGAAAGG
CGAAGACAGGAGTGA
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