prot_Ecto-sp13_S_contig14432.3409.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14432.3409.1
Unique Nameprot_Ecto-sp13_S_contig14432.3409.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length42
Homology
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.000e-17
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0
Query:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 42
            MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN + W
Sbjct:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNVKSW 42          
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 9.100e-17
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0
Query:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 42
            MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN + W
Sbjct:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNVKSW 42          
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.760e-8
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    2 SGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 42
            S  L+GSRISLIS+KDIR+EGIL  +D EN+SVTLQ+ + W
Sbjct:    3 SQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSW 43          
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A6H5L3S6_9PHAE (LSM14 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S6_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 3.980e-6
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    5 LVGSRISLISRKDIRWEGILVQVDRENASVTLQNG 39
            LVGSRISLIS+K+IR+EG L  ++  +AS+ LQNG
Sbjct:   10 LVGSRISLISKKNIRYEGTLYNINTSDASLALQNG 44          
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: W7TTD5_9STRA (Ribonucleoprotein LSM n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTD5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.060e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    3 GDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 38
            G L+GS ISL+S KDIR+EG+L  +D+E +SVTLQ+
Sbjct:    5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQS 40          
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A4D9D9H3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9H3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.140e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    3 GDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 38
            G L+GS ISL+S KDIR+EG+L  +D+E +SVTLQ+
Sbjct:    5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQS 40          
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A0V0XHR1_TRIPS (Protein LSM14-like protein A n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0XHR1_TRIPS)

HSP 1 Score: 45.8 bits (107), Expect = 1.550e-5
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0
Query:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNG 39
            M+  L+GS+ISLIS+ +IR+EGIL  VD E +S+ L  G
Sbjct:    1 MNAPLLGSKISLISKSEIRYEGILYTVDPEQSSIALAKG 39          
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A1Z5JPN3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPN3_FISSO)

HSP 1 Score: 48.9 bits (115), Expect = 1.800e-5
Identity = 20/38 (52.63%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 38
            M+  L+G RISL+S+K+IR+EG+L  ++ +NA+V LQN
Sbjct:    1 MTNPLLGKRISLVSKKNIRYEGVLYSINEQNATVALQN 38          
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A9RY61_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RY61_PHYPA)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    6 VGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 42
            +GS ISL S+ +IR+EGIL  VD EN+++ LQNG  W
Sbjct:  104 IGSLISLTSKSEIRYEGILYTVDTENSNIALQNGTVW 140          
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A177UBA8_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UBA8_9BASI)

HSP 1 Score: 47.8 bits (112), Expect = 4.680e-5
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    2 SGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 42
            +G L+G+ ISLISR DIR++G+L QVD   A+++L+    W
Sbjct:   33 AGHLIGALISLISRSDIRYQGLLAQVDPAQATISLEKVRSW 73          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FK17_ECTSI5.000e-1792.86Novel Sm-like protein with long N-and C-terminal d... [more]
A0A6H5KDD7_9PHAE9.100e-1792.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C876_9STRA1.760e-865.85Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
A0A6H5L3S6_9PHAE3.980e-662.86LSM14 domain-containing protein n=1 Tax=Ectocarpus... [more]
W7TTD5_9STRA6.060e-661.11Ribonucleoprotein LSM n=2 Tax=Nannochloropsis gadi... [more]
A0A4D9D9H3_9STRA7.140e-661.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0V0XHR1_TRIPS1.550e-553.85Protein LSM14-like protein A n=1 Tax=Trichinella p... [more]
A0A1Z5JPN3_FISSO1.800e-552.63Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A9RY61_PHYPA1.830e-556.76Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A177UBA8_9BASI4.680e-548.78Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 5..38
e-value: 9.4E-11
score: 41.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..42
e-value: 8.7E-11
score: 43.4
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14432contigEcto-sp13_S_contig14432:4284..4409 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14432.3409.1mRNA_Ecto-sp13_S_contig14432.3409.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14432 4284..4409 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14432.3409.1 ID=prot_Ecto-sp13_S_contig14432.3409.1|Name=mRNA_Ecto-sp13_S_contig14432.3409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR010920LSM_dom_sf