mRNA_Ecto-sp13_S_contig14432.3409.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14432.3409.1
Unique NamemRNA_Ecto-sp13_S_contig14432.3409.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.000e-17
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 126
            MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN + W
Sbjct:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNVKSW 42
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 9.100e-17
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 126
            MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN + W
Sbjct:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNVKSW 42
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.760e-8
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    4 SGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 126
            S  L+GSRISLIS+KDIR+EGIL  +D EN+SVTLQ+ + W
Sbjct:    3 SQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSW 43
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A6H5L3S6_9PHAE (LSM14 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S6_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 3.980e-6
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   13 LVGSRISLISRKDIRWEGILVQVDRENASVTLQNG 117
            LVGSRISLIS+K+IR+EG L  ++  +AS+ LQNG
Sbjct:   10 LVGSRISLISKKNIRYEGTLYNINTSDASLALQNG 44
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: W7TTD5_9STRA (Ribonucleoprotein LSM n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTD5_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.060e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    7 GDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 114
            G L+GS ISL+S KDIR+EG+L  +D+E +SVTLQ+
Sbjct:    5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQS 40
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A4D9D9H3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9H3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 7.140e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    7 GDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 114
            G L+GS ISL+S KDIR+EG+L  +D+E +SVTLQ+
Sbjct:    5 GKLIGSVISLVSNKDIRYEGVLYAIDQEKSSVTLQS 40
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A0V0XHR1_TRIPS (Protein LSM14-like protein A n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0XHR1_TRIPS)

HSP 1 Score: 45.8 bits (107), Expect = 1.550e-5
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNG 117
            M+  L+GS+ISLIS+ +IR+EGIL  VD E +S+ L  G
Sbjct:    1 MNAPLLGSKISLISKSEIRYEGILYTVDPEQSSIALAKG 39
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A1Z5JPN3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPN3_FISSO)

HSP 1 Score: 48.9 bits (115), Expect = 1.800e-5
Identity = 20/38 (52.63%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQN 114
            M+  L+G RISL+S+K+IR+EG+L  ++ +NA+V LQN
Sbjct:    1 MTNPLLGKRISLVSKKNIRYEGVLYSINEQNATVALQN 38
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A9RY61_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RY61_PHYPA)

HSP 1 Score: 48.9 bits (115), Expect = 1.830e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   16 VGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 126
            +GS ISL S+ +IR+EGIL  VD EN+++ LQNG  W
Sbjct:  104 IGSLISLTSKSEIRYEGILYTVDTENSNIALQNGTVW 140
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BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Match: A0A177UBA8_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UBA8_9BASI)

HSP 1 Score: 47.8 bits (112), Expect = 4.680e-5
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    4 SGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW 126
            +G L+G+ ISLISR DIR++G+L QVD   A+++L+    W
Sbjct:   33 AGHLIGALISLISRSDIRYQGLLAQVDPAQATISLEKVRSW 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14432.3409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FK17_ECTSI5.000e-1792.86Novel Sm-like protein with long N-and C-terminal d... [more]
A0A6H5KDD7_9PHAE9.100e-1792.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C876_9STRA1.760e-865.85Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]
A0A6H5L3S6_9PHAE3.980e-662.86LSM14 domain-containing protein n=1 Tax=Ectocarpus... [more]
W7TTD5_9STRA6.060e-661.11Ribonucleoprotein LSM n=2 Tax=Nannochloropsis gadi... [more]
A0A4D9D9H3_9STRA7.140e-661.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0V0XHR1_TRIPS1.550e-553.85Protein LSM14-like protein A n=1 Tax=Trichinella p... [more]
A0A1Z5JPN3_FISSO1.800e-552.63Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A9RY61_PHYPA1.830e-556.76Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A177UBA8_9BASI4.680e-548.78Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14432contigEcto-sp13_S_contig14432:4284..4409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score79.3
Seed ortholog evalue4.6e-13
Seed eggNOG ortholog2880.D7FK17
Preferred nameLSM14A
Model size126
KEGG koko:K18749
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0000242,GO:0000932,GO:0001817,GO:0001819,GO:0001959,GO:0001961,GO:0002218,GO:0002221,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006417,GO:0006446,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0017148,GO:0017151,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030522,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031349,GO:0031369,GO:0031370,GO:0032268,GO:0032269,GO:0032991,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0035556,GO:0035770,GO:0036464,GO:0039528,GO:0039529,GO:0043186,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044764,GO:0045088,GO:0045089,GO:0045169,GO:0045495,GO:0045947,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051233,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0060338,GO:0060340,GO:0060759,GO:0060760,GO:0065003,GO:0065007,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0097159,GO:0098542,GO:0098586,GO:1901363,GO:1904688,GO:1904689,GO:1990124,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
Exons1
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsKOG1073@1,KOG1073@2759
Cds size126
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.4071379-CDS-Ecto-sp13_S_contig14432:4283..44091681462770.4071379-CDS-Ecto-sp13_S_contig14432:4283..4409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14432 4284..4409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14432.3409.1prot_Ecto-sp13_S_contig14432.3409.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14432 4284..4409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14432.3409.1

>prot_Ecto-sp13_S_contig14432.3409.1 ID=prot_Ecto-sp13_S_contig14432.3409.1|Name=mRNA_Ecto-sp13_S_contig14432.3409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MSGDLVGSRISLISRKDIRWEGILVQVDRENASVTLQNGERW
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mRNA from alignment at Ecto-sp13_S_contig14432:4284..4409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14432.3409.1 ID=mRNA_Ecto-sp13_S_contig14432.3409.1|Name=mRNA_Ecto-sp13_S_contig14432.3409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14432:4284..4409+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGAGATCTCGTGGGAAGCAGGATCAGCCTCATTTCCAGGAAAGA
CATCCGGTGGGAGGGCATCCTGGTCCAGGTTGACCGCGAGAATGCCTCGG
TCACCCTACAGAATGGTGAGCGCTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14432:4284..4409+

>mRNA_Ecto-sp13_S_contig14432.3409.1 ID=mRNA_Ecto-sp13_S_contig14432.3409.1|Name=mRNA_Ecto-sp13_S_contig14432.3409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14432:4284..4409+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGAGATCTCGTGGGAAGCAGGATCAGCCTCATTTCCAGGAAAGA
CATCCGGTGGGAGGGCATCCTGGTCCAGGTTGACCGCGAGAATGCCTCGG
TCACCCTACAGAATGGTGAGCGCTGG
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