mRNA_Ecto-sp13_S_contig14431.3407.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14431.3407.1
Unique NamemRNA_Ecto-sp13_S_contig14431.3407.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14431.3407.1 vs. uniprot
Match: D8LUA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA1_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 1.100e-109
Identity = 186/206 (90.29%), Postives = 189/206 (91.75%), Query Frame = 1 
Query:  115 MALEVDILSVVLEFVDSLEGAPSSE--AHVVVEGGAECRAVCRSWRITVEKTMVRVLPPMTPVSLAALLVPGRLRGVLLSCQYLGREFHEHAAAAAFVALVSRADAVALRXXXXXXXXXXXXAGAAGAPRGVPSQGVMAEEAAGGETIINNNTSFVCCRVALKRIVGEALDSPAFSWCSALGLDDSRLLESCVGASILVNARWFSG 726
            M LE D+LSVVLEFVDSLEGAP SE  AHVVV+GGAECRAVCRSWRITVEKT+ RVLPPMTPVSLAALLVPGRLRGVLLSCQYLGREFHEHAAAAAFVALVSRADA    XXXXXXXXXXXX   AGAPRGVPSQGVMAEEAAGGE IINNNTSFVCCRVALKRIV EALDSPAFSWCS LGLDDSRLLESCVGAS LVNARWFSG
Sbjct:    1 MTLEADVLSVVLEFVDSLEGAPPSEEVAHVVVQGGAECRAVCRSWRITVEKTIGRVLPPMTPVSLAALLVPGRLRGVLLSCQYLGREFHEHAAAAAFVALVSRADAXXXXXXXXXXXXXXXXXXXAGAPRGVPSQGVMAEEAAGGEGIINNNTSFVCCRVALKRIVREALDSPAFSWCSTLGLDDSRLLESCVGASSLVNARWFSG 206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14431.3407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUA1_ECTSI1.100e-10990.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14431contigEcto-sp13_S_contig14431:2663..3411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size749
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004240.1
Cds size615
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.2936049-UTR-Ecto-sp13_S_contig14431:2662..27761681462770.2936049-UTR-Ecto-sp13_S_contig14431:2662..2776Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14431 2663..2776 +
1681462770.3164046-UTR-Ecto-sp13_S_contig14431:3391..34111681462770.3164046-UTR-Ecto-sp13_S_contig14431:3391..3411Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14431 3392..3411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.3073661-CDS-Ecto-sp13_S_contig14431:2776..33911681462770.3073661-CDS-Ecto-sp13_S_contig14431:2776..3391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14431 2777..3391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14431.3407.1prot_Ecto-sp13_S_contig14431.3407.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14431 2777..3391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14431.3407.1

>prot_Ecto-sp13_S_contig14431.3407.1 ID=prot_Ecto-sp13_S_contig14431.3407.1|Name=mRNA_Ecto-sp13_S_contig14431.3407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
MALEVDILSVVLEFVDSLEGAPSSEAHVVVEGGAECRAVCRSWRITVEKT
MVRVLPPMTPVSLAALLVPGRLRGVLLSCQYLGREFHEHAAAAAFVALVS
RADAVALRLREAAAAPATAEAGAAGAPRGVPSQGVMAEEAAGGETIINNN
TSFVCCRVALKRIVGEALDSPAFSWCSALGLDDSRLLESCVGASILVNAR
WFSG*
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mRNA from alignment at Ecto-sp13_S_contig14431:2663..3411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14431.3407.1 ID=mRNA_Ecto-sp13_S_contig14431.3407.1|Name=mRNA_Ecto-sp13_S_contig14431.3407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=749bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14431:2663..3411+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTCTTGCCAGATCCGAGCAGGTGCCTGGTTTGGATTGATCGCGTGGTG
GACTTTCAGGTCGACGGACTAGTGTTATCGAAGGTGCACCAACAACGCCG
CCACCGCCGGCGTGATGGCGCTGGAGGTAGACATCCTCAGCGTGGTATTG
GAATTCGTCGACAGTCTTGAAGGTGCTCCGTCCTCAGAAGCACATGTTGT
TGTGGAGGGGGGAGCAGAGTGCCGAGCAGTGTGCAGAAGCTGGCGCATCA
CGGTCGAGAAGACGATGGTACGGGTCCTGCCGCCGATGACTCCCGTGTCG
CTGGCCGCCCTGCTCGTGCCCGGCAGGCTCCGTGGCGTGCTTCTGTCCTG
CCAGTATCTGGGCCGCGAGTTCCACGAGCATGCCGCAGCCGCCGCGTTCG
TTGCGCTCGTGTCGAGAGCCGACGCAGTGGCTCTTCGCCTGCGTGAGGCG
GCAGCAGCACCAGCGACAGCAGAAGCAGGAGCAGCAGGTGCACCACGAGG
AGTGCCAAGCCAAGGAGTGATGGCTGAAGAAGCTGCGGGAGGCGAAACCA
TCATCAACAACAACACGTCGTTTGTGTGCTGCCGGGTCGCCCTGAAGCGG
ATCGTGGGAGAAGCCCTGGACAGCCCGGCGTTCTCGTGGTGCAGCGCGCT
CGGCCTGGATGACTCAAGGCTACTGGAGAGTTGCGTAGGAGCTTCCATCC
TCGTCAACGCGAGGTGGTTTTCGGGATAGCAAAAACCTGTTGTTCGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14431:2663..3411+

>mRNA_Ecto-sp13_S_contig14431.3407.1 ID=mRNA_Ecto-sp13_S_contig14431.3407.1|Name=mRNA_Ecto-sp13_S_contig14431.3407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14431:2663..3411+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTGGAGGTAGACATCCTCAGCGTGGTATTGGAATTCGTCGACAG
TCTTGAAGGTGCTCCGTCCTCAGAAGCACATGTTGTTGTGGAGGGGGGAG
CAGAGTGCCGAGCAGTGTGCAGAAGCTGGCGCATCACGGTCGAGAAGACG
ATGGTACGGGTCCTGCCGCCGATGACTCCCGTGTCGCTGGCCGCCCTGCT
CGTGCCCGGCAGGCTCCGTGGCGTGCTTCTGTCCTGCCAGTATCTGGGCC
GCGAGTTCCACGAGCATGCCGCAGCCGCCGCGTTCGTTGCGCTCGTGTCG
AGAGCCGACGCAGTGGCTCTTCGCCTGCGTGAGGCGGCAGCAGCACCAGC
GACAGCAGAAGCAGGAGCAGCAGGTGCACCACGAGGAGTGCCAAGCCAAG
GAGTGATGGCTGAAGAAGCTGCGGGAGGCGAAACCATCATCAACAACAAC
ACGTCGTTTGTGTGCTGCCGGGTCGCCCTGAAGCGGATCGTGGGAGAAGC
CCTGGACAGCCCGGCGTTCTCGTGGTGCAGCGCGCTCGGCCTGGATGACT
CAAGGCTACTGGAGAGTTGCGTAGGAGCTTCCATCCTCGTCAACGCGAGG
TGGTTTTCGGGATAG
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