mRNA_Ecto-sp13_S_contig14427.3403.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14427.3403.1
Unique NamemRNA_Ecto-sp13_S_contig14427.3403.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: D8LBF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBF1_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 4.120e-89
Identity = 133/140 (95.00%), Postives = 137/140 (97.86%), Query Frame = 1
Query:    1 MESGSAAWGGGEGRGPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAPDAGEPSGGEGSLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRVGAARLSSSDELPTTTAHR 420
            MESGSAAWGGGEGRGPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQ PDAG+P GG+GSL+AQNEAATQVFNTESLEACANCGRTFLKERLI+HQKSCTSSSPAKRVGAARLSSSDELPTTT HR
Sbjct:    1 MESGSAAWGGGEGRGPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQEPDAGDPLGGKGSLEAQNEAATQVFNTESLEACANCGRTFLKERLIIHQKSCTSSSPAKRVGAARLSSSDELPTTTVHR 140          
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: A0A6G0WSX5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSX5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.000e-31
Identity = 68/128 (53.12%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   46 PKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAPDAGEPSGGEG------SLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRVGAARL---SSSDELP 402
            PKVR CYVCGR YGLSS+EIHLKQCK  W A +E+ P  ERKP+P+ P     S           L+AQN AA Q F  + +E C  CGRTF  ERL +H +SCT+ +PAK VG AR    SSS E P
Sbjct:    8 PKVRTCYVCGREYGLSSFEIHLKQCKQLWIAQEEKKPLKERKPVPEPPTVLNDSDKSSYDLTPEELEAQNRAAAQAFEQKVMEKCQFCGRTFNPERLAIHNRSCTADNPAKAVGQARPKDDSSSHEAP 135          
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: A0A024TQV1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQV1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.490e-31
Identity = 67/122 (54.92%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   46 PKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAPDA------GE-PSGGE---GSLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRVGAARL 381
            PKVR CYVCGR YGLSSYEIHLKQCK  W A +E  P  ER+P+P+ P A      G+ PS  +     L+AQN AA Q F  + +E CA CGRTF  ERL +H +SCT+  PAK +G ARL
Sbjct:   10 PKVRTCYVCGRDYGLSSYEIHLKQCKQLWIAQEELKPLKERRPVPEPPHALVSSECGDVPSAYDLTPEQLEAQNRAAQQAFENKVMEKCAFCGRTFNPERLAIHNRSCTAEHPAKAIGQARL 131          
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: T0R1F0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R1F0_SAPDV)

HSP 1 Score: 122 bits (307), Expect = 4.910e-31
Identity = 65/126 (51.59%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   40 RGPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAPDAGEPSGG------EGSLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRVGAARLSSSDEL 399
            R PKVR+CYVCGR YGLSS+EIHLKQCK  W A +E+ P  ER+P+P+ P                 L+AQN AA + F  + +E CA CGRTF  ERL +H +SCT+  PA+ VG ARLS S  L
Sbjct:   45 RRPKVRLCYVCGREYGLSSFEIHLKQCKLLWIAQEEKKPLRERRPVPEPPQELPIEANVLYQLSPDELEAQNRAAARAFEEKVMEKCAYCGRTFNPERLAIHNRSCTAERPARAVGTARLSPSPSL 170          
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: A0A1W0A3F6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3F6_9STRA)

HSP 1 Score: 119 bits (299), Expect = 5.020e-30
Identity = 69/129 (53.49%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   40 RGPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAP-------DAG-----EPSGGEGSLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRVGAARLSSS 390
            R PKVR+CYVCGR YGLSS+EIHLKQCK  + A +ER P  ERKPLP+ P       DA       P      L+AQN AA + F  + +E CA CGRTF  ERL +H +SCT+  PA+ VG ARLS S
Sbjct:   51 RVPKVRVCYVCGREYGLSSFEIHLKQCKQLFIAQEERKPLRERKPLPEPPNELVEITDATVLYKLSPE----ELEAQNRAAAKTFENKVMEKCAFCGRTFNPERLAIHNRSCTAERPARAVGTARLSPS 175          
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: W4G6I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G6I6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.060e-30
Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   46 PKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAPDA---GEPSGGEG---------SLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRVGAARL 381
            PKVR CYVCGR YG SS+EIHLKQCK  W A +E  P  ER+P+P+ P         GG+           L+AQN AA Q F  + +E C  CGRTF  ERL +H +SCT+  PAK +G ARL
Sbjct:   10 PKVRTCYVCGRDYGFSSFEIHLKQCKQMWIAQEELKPLRERRPVPEPPPTLLVATEGGGDAPSSYDLTPEQLEAQNRAAQQAFENKVMEKCPYCGRTFNPERLAIHNRSCTAEHPAKAIGQARL 133          
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: A0A1V9Z3G1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3G1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.150e-29
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   40 RGPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAPDAGEPSGG------EGSLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRVGAARLSSSDELP 402
            R PKV++CYVCGR YGLSS EIH+KQCK  W A +E+ P  ER+P+P+ P                 L+A N AA + F  + +E CA CGRTF  ERL +H +SCT+  PA+ VG ARL+ ++  P
Sbjct:   51 RRPKVKLCYVCGREYGLSSIEIHVKQCKLLWIAQEEKKPPRERRPVPEPPHEVALEANVLYQLSPDELEALNRAAAKAFEDKVMEKCAFCGRTFNPERLAIHNRSCTAEKPARAVGTARLAPTEPSP 177          
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: G4YUM2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YUM2_PHYSP)

HSP 1 Score: 116 bits (291), Expect = 1.230e-27
Identity = 61/116 (52.59%), Postives = 79/116 (68.10%), Query Frame = 1
Query:   43 GPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAPDA-GEPSGG--EGSLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRV--GAA 375
            GP  R+C+VCGR YGLSS+EIHLKQCK  W  T+E  PK+ER+P+P+ P   GE  GG     ++A N+AA + +N   +E C  CGRTF + RL +H KSCT+ S AK+V  GAA
Sbjct:  506 GPVTRLCHVCGRQYGLSSFEIHLKQCKKLWVQTEELKPKNERRPIPKTPPGIGEGGGGMTRQEIEALNQAAQEAYNVHGMETCEFCGRTFAEGRLAIHNKSCTADSVAKKVADGAA 621          
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: A0A482SAZ1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAZ1_9ARCH)

HSP 1 Score: 111 bits (278), Expect = 2.100e-27
Identity = 65/138 (47.10%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   43 GPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAP---------------------DAGEP--------SGGEG-SLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRV 366
            GPK RICY+CGR Y L SYEIHLKQCK  W A + + P+ ERKPLP+ P                     D G           G EG SL   N  A + +NTESL  CA+CGRTFL E+L +H KSCT+  PA+RV
Sbjct:   16 GPKARICYICGRQYMLHSYEIHLKQCKELWIAREAQKPERERKPLPEDPALRLMGGXXXXXXXXXXXXXXDDGXXXXXXXXXTGGAEGLSLDEINRLANEAYNTESLSTCAHCGRTFLPEKLAIHNKSCTAEHPARRV 153          
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Match: A0A024G843_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G843_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.550e-27
Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   43 GPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQERLPKSERKPLPQAPD-AG-------EPSGGE----GSLQAQNEAATQVFNTESLEACANCGRTFLKERLIVHQKSCTSSSPAKRV 366
            GP  R+C+VCGR YGLSS++IHLKQCK  W A +E  P+ ERKPLP+ P  AG       +PSG +      ++A N+AA++ +N   +E C NCGRTF + RL +H KSC   + AK++
Sbjct:    9 GPLTRVCHVCGRQYGLSSFDIHLKQCKKLWIAQEELKPRGERKPLPKTPPKAGGARELESDPSGSKPMTRDEVEAMNKAASEAYNVHGMEKCENCGRTFAEGRLAIHSKSCRPGNVAKKI 128          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14427.3403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBF1_ECTSI4.120e-8995.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0WSX5_9STRA1.000e-3153.13Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TQV1_9STRA1.490e-3154.92Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
T0R1F0_SAPDV4.910e-3151.59Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1W0A3F6_9STRA5.020e-3053.49Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4G6I6_9STRA7.060e-3050.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9Z3G1_9STRA2.150e-2947.24Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
G4YUM2_PHYSP1.230e-2752.59Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A482SAZ1_9ARCH2.100e-2747.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A024G843_9STRA4.550e-2747.50Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14427contigEcto-sp13_S_contig14427:2965..4419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score274.2
Seed ortholog evalue3.3e-71
Seed eggNOG ortholog2880.D8LBF1
Model size420
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.zinc-finger of a C2HC-type
EggNOG OGs28PRY@1,2QWEF@2759
Ec32 ortholog descriptionZinc finger C2HC domain-containing protein
Ec32 orthologEc-27_004190.1
Cds size420
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462769.954279-CDS-Ecto-sp13_S_contig14427:2964..30411681462769.954279-CDS-Ecto-sp13_S_contig14427:2964..3041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14427 2965..3041 +
1681462769.9704373-CDS-Ecto-sp13_S_contig14427:3451..35341681462769.9704373-CDS-Ecto-sp13_S_contig14427:3451..3534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14427 3452..3534 +
1681462769.9794757-CDS-Ecto-sp13_S_contig14427:3800..39541681462769.9794757-CDS-Ecto-sp13_S_contig14427:3800..3954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14427 3801..3954 +
1681462769.9874616-CDS-Ecto-sp13_S_contig14427:4313..44191681462769.9874616-CDS-Ecto-sp13_S_contig14427:4313..4419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14427 4314..4419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14427.3403.1prot_Ecto-sp13_S_contig14427.3403.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14427 2965..4419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14427.3403.1

>prot_Ecto-sp13_S_contig14427.3403.1 ID=prot_Ecto-sp13_S_contig14427.3403.1|Name=mRNA_Ecto-sp13_S_contig14427.3403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MESGSAAWGGGEGRGPKVRICYVCGRGYGLSSYEIHLKQCKAKWEATQER
LPKSERKPLPQAPDAGEPSGGEGSLQAQNEAATQVFNTESLEACANCGRT
FLKERLIVHQKSCTSSSPAKRVGAARLSSSDELPTTTAHR
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mRNA from alignment at Ecto-sp13_S_contig14427:2965..4419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14427.3403.1 ID=mRNA_Ecto-sp13_S_contig14427.3403.1|Name=mRNA_Ecto-sp13_S_contig14427.3403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14427:2965..4419+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAATCCGGCAGCGCAGCATGGGGTGGGGGTGAAGGGAGGGGGCCAAA AGTAAGGATATGCTACGTGTGCGGCAGGTGGGCATTCTGCGCTTGCTTGT ATAATTATAATAAATGGTAGAATAGAACACTACGTGTAGTACGCGCTGTA CGCGTATGTACGTGTCGTGTATGCATGTACAGTAGACTTGCATCATCAGA GAAAAAAACAATTTACTGCTTACAGTGGTATGTCTCGCGAAGAAGGTAAT AAATAAATGTGCTGCCTGCTTTTTTTTTGGCCTCCCATGCTCCTCTCTCT GAACATGTTGGTCGCATGGAAAGAAGAAAAAATGTTGTTGAGAGAGAGCG AGTTGTTGCAGAGTTTTTTTATCACGTTAAGAAGACAAGATTCGCAAGAA GAGTGGATGTTTCATGCTTGTCGCATAGTCTATCTATGCACATCTTCAAT ATGTGTGGCAATCACTCTCGCTCTCGGTTTCTGTTAGGGGATACGGACTT TCATCCTATGAGATCCACCTGAAGCAATGCAAAGCTAAGTGGGAAGCGAC GCAAGAGCGACTACCTAAATGTGAGCTTGCAAGCAAACAACTACATGTAG CTGTTGTCTGTTGCATTTATTCGGCTTAATATATTTCAACATGCACACAG GATAGAGAGCAGGCTGGCTGATCATTTTGCACCCGGCGCCCTCTGGCCGA TGTATAGTCTATGTATTTATTATCGTACGAATTTTAAAGTAGTCTCTCCG TTTCGAATGCGCGGCGGCTTAAACTTACCGGTCTGTGCATATTATGTAAA CTTGCGTCCGTTCGTTAAAACTTGGACTTTTTTCAGCTGAGCGCAAGCCG CTGCCGCAAGCACCAGATGCAGGCGAACCGTCAGGTGGCGAAGGGTCGCT TCAAGCACAGAACGAAGCTGCTACGCAGGTTTTCAACACAGAGTCGTTGG AGGCATGTGCGAATTGCGGGAGAACGTTTCTGAAGGAAAGGTAAGAAGGG CTGGTGGACTACTTTTCATATCTTCATGTCATCATGTACGTATTTATCTA CACAGCCGTCTATCTATGCATTGTTGTTGTAGACAACCAGGTAGGTTAAA CAGTACATGTCTACACGAAGGTTTTACATTCTCCGTGAACACCGCGAATG GATCAAAGTTCCCTACCAGCGACCGATGAGCAATCAGACACACGTATATA CGTGATGCCCCCCCCCCCCCCGGCTTTGTAGGGATGCGAGGTCAATGGTC TAAAGGGTACGGCATGCACGACTATGAGTACCCCCCCCCCCTCACATCCT CTTTGCGTGAACCTGACGATGTTGCTATACGTACGTTTATTTGCTGTAGG CTGATCGTCCACCAAAAAAGTTGCACATCATCATCACCAGCAAAACGTGT CGGCGCCGCAAGGCTATCCTCCTCTGACGAACTACCGACAACGACAGCGC ACAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14427:2965..4419+

>mRNA_Ecto-sp13_S_contig14427.3403.1 ID=mRNA_Ecto-sp13_S_contig14427.3403.1|Name=mRNA_Ecto-sp13_S_contig14427.3403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14427:2965..4419+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAATCCGGCAGCGCAGCATGGGGTGGGGGTGAAGGGAGGGGGCCAAA
AGTAAGGATATGCTACGTGTGCGGCAGGGGATACGGACTTTCATCCTATG
AGATCCACCTGAAGCAATGCAAAGCTAAGTGGGAAGCGACGCAAGAGCGA
CTACCTAAATCTGAGCGCAAGCCGCTGCCGCAAGCACCAGATGCAGGCGA
ACCGTCAGGTGGCGAAGGGTCGCTTCAAGCACAGAACGAAGCTGCTACGC
AGGTTTTCAACACAGAGTCGTTGGAGGCATGTGCGAATTGCGGGAGAACG
TTTCTGAAGGAAAGGCTGATCGTCCACCAAAAAAGTTGCACATCATCATC
ACCAGCAAAACGTGTCGGCGCCGCAAGGCTATCCTCCTCTGACGAACTAC
CGACAACGACAGCGCACAGA
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