prot_Ecto-sp13_S_contig14421.3401.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig14421.3401.1
Unique Name	prot_Ecto-sp13_S_contig14421.3401.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	386

Homology

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BLAST of mRNA_Ecto-sp13_S_contig14421.3401.1 vs. uniprot
Match: D8LEB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB2_ECTSI)

HSP 1 Score: 479 bits (1232), Expect = 5.940e-166
Identity = 305/387 (78.81%), Postives = 313/387 (80.88%), Query Frame = 0

Query:    1 GPSTPSPRLSADAAEWHPPSFLAKTVEDESEKDQQPAEVGELKGVSPSAASTAAEGVEQERCPGSNTPSGEDEGREDGSTPTPLPRSSPAIISDEPTAAPTAAVSPPDDGSXXXXXXXXXXXXXXXXXXPDSAQGDSTTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVESDEATPVPALDDAPFTPSTSEDEGPRNVVPDAALVLEDGAGVAPGEVMATANCTAADPSNACGERAGEPAVEGLPDTATAVATT-DCQGTPTDGCTVAEAMAADTDAVNGSKPEVA-SGATGQHDKVPGGGEGREGTRGGKQLTDAASSDSAETSRSDPDLSYGGGKNNGLGGKFSLGDDGGYGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 385
            GPS PSPRLSADAAEWHPPSFLAKTVE+ESEKDQQPAEVGELKG SPSAA+TAAEGVEQE CPGSNTP G+DEGREDGSTP PLP S+PAI SDE TAA    VSPP D  XXXXXXXXXXXXXXXXXXPDSAQGD  T S                              GVESDEATP PALDDAP  PSTSEDEGPRNVVPDAALVLED AGVAP EVMATANCTAAD S AC E+  EPAV GL +TATAVA T D QGTP+DGCTVAEA AAD DAVNGSKPEVA SGATGQ DK PGG EG +GTRGGKQLTDAASSDSAETSRSDPDLSYGGGK NGL GKF LGDDGG GGGLLDDPRWRWGSVVAVAAVVLLIGLRRR
Sbjct:   13 GPSAPSPRLSADAAEWHPPSFLAKTVENESEKDQQPAEVGELKGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSSAPAITSDEQTAA----VSPPADXXXXXXXXXXXXXXXXXXXXPDSAQGDPATVSDESTPVEVLATEDVKSDSVEVVGDDEAQPDGVESDEATPAPALDDAPSAPSTSEDEGPRNVVPDAALVLEDCAGVAPDEVMATANCTAADISTACCEKPEEPAVAGLTETATAVAATADRQGTPSDGCTVAEATAADADAVNGSKPEVALSGATGQEDKAPGGEEGGDGTRGGKQLTDAASSDSAETSRSDPDLSYGGGKGNGLVGKFLLGDDGGCGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 395

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BLAST of mRNA_Ecto-sp13_S_contig14421.3401.1 vs. uniprot
Match: A0A6H5K876_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K876_9PHAE)

HSP 1 Score: 478 bits (1231), Expect = 4.490e-165
Identity = 306/427 (71.66%), Postives = 318/427 (74.47%), Query Frame = 0

Query:    1 GPSTPSPRLSADAAEWHPPSFLAKTVEDESEKDQQPAEVGELKGVSPSAASTAAEGVEQERCPGSNTPSGEDEGREDGSTPTPLPRSSPAIISDEPTAAPTAAVSPP------------------------------------------DDGSXXXXXXXXXXXXXXXXXXPDSAQGDSTTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVESDEATPVPALDDAPFTPSTSEDEGPRNVVPDAALVLEDGAGVAPGEVMATANCTAADPSNACGERAGEPAVEGLPDTATAVATTDCQGTPTDGCTVAEAMAADTDAVNGSKPEVASGATGQHDKVPGGGEGREGTRGGKQLTDAASSDSAETSRSDPDLSYGGGKNNGLGGKFSLGDDGGYGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 385
            GPSTPSPRLSADAAEWHPPSFLAKT+E+ESE+DQQPAEVGEL+G SPSAA+TAAEGVEQE CPGSNTP G+DEGREDGSTP PLP S+PAI SDEPTAA    VSPP                                              XXXXXXXXXXXXXXXXXXPDSAQGDSTTAS                              GVE DEATPVPALDDAP  PSTSED GPRNVVPDAALVLEDGAGVAPGEVMATA CTAADP NAC E+AGEPA+ GL +T TAVAT DCQGTPTDG TV EA AADTDAVNGSKPEVASGATGQHDKVPGG EG EGTRG +QLTDA SSDSAE SRSDPDLSYGGGK N LGGKF LGD+GGY GGLLDDPRWRWGSVVAVAAVVLLIGLRRR
Sbjct:   21 GPSTPSPRLSADAAEWHPPSFLAKTIENESEEDQQPAEVGELQGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSSAPAIASDEPTAA----VSPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSAQGDSTTASDEPTPLEVLTTEDVKSGSVEVVGDDEAQPDGVERDEATPVPALDDAPSAPSTSEDAGPRNVVPDAALVLEDGAGVAPGEVMATAYCTAADPINACCEKAGEPALAGLSETPTAVATADCQGTPTDGRTVEEATAADTDAVNGSKPEVASGATGQHDKVPGGEEGGEGTRGSEQLTDAVSSDSAENSRSDPDLSYGGGKGNALGGKFLLGDEGGYKGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 443

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig14421.3401.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig14421.3401.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LEB2_ECTSI	5.940e-166	78.81	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K876_9PHAE	4.490e-165	71.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..364
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 383..385
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 365..382
None	No IPR available	TMHMM	TMhelix		coord: 365..382

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig14421	contig	Ecto-sp13_S_contig14421:964..2358 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig14421.3401.1	mRNA_Ecto-sp13_S_contig14421.3401.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig14421 964..2358 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig14421.3401.1 ID=prot_Ecto-sp13_S_contig14421.3401.1|Name=mRNA_Ecto-sp13_S_contig14421.3401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp
GPSTPSPRLSADAAEWHPPSFLAKTVEDESEKDQQPAEVGELKGVSPSAA
STAAEGVEQERCPGSNTPSGEDEGREDGSTPTPLPRSSPAIISDEPTAAP
TAAVSPPDDGSSSIPGDEQEREDGSTPAPPDSAQGDSTTASDEPTPVEVL
ATEDVKSGSVEVVGDDEAQPDGVESDEATPVPALDDAPFTPSTSEDEGPR
NVVPDAALVLEDGAGVAPGEVMATANCTAADPSNACGERAGEPAVEGLPD
TATAVATTDCQGTPTDGCTVAEAMAADTDAVNGSKPEVASGATGQHDKVP
GGGEGREGTRGGKQLTDAASSDSAETSRSDPDLSYGGGKNNGLGGKFSLG
DDGGYGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR*