mRNA_Ecto-sp13_S_contig14421.3401.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14421.3401.1
Unique NamemRNA_Ecto-sp13_S_contig14421.3401.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14421.3401.1 vs. uniprot
Match: D8LEB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB2_ECTSI)

HSP 1 Score: 479 bits (1232), Expect = 5.940e-166
Identity = 305/387 (78.81%), Postives = 313/387 (80.88%), Query Frame = 1 
Query:    1 GPSTPSPRLSADAAEWHPPSFLAKTVEDESEKDQQPAEVGELKGVSPSAASTAAEGVEQERCPGSNTPSGEDEGREDGSTPTPLPRSSPAIISDEPTAAPTAAVSPPDDGSXXXXXXXXXXXXXXXXXXPDSAQGDSTTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVESDEATPVPALDDAPFTPSTSEDEGPRNVVPDAALVLEDGAGVAPGEVMATANCTAADPSNACGERAGEPAVEGLPDTATAVATT-DCQGTPTDGCTVAEAMAADTDAVNGSKPEVA-SGATGQHDKVPGGGEGREGTRGGKQLTDAASSDSAETSRSDPDLSYGGGKNNGLGGKFSLGDDGGYGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 1155
            GPS PSPRLSADAAEWHPPSFLAKTVE+ESEKDQQPAEVGELKG SPSAA+TAAEGVEQE CPGSNTP G+DEGREDGSTP PLP S+PAI SDE TAA    VSPP D  XXXXXXXXXXXXXXXXXXPDSAQGD  T S                              GVESDEATP PALDDAP  PSTSEDEGPRNVVPDAALVLED AGVAP EVMATANCTAAD S AC E+  EPAV GL +TATAVA T D QGTP+DGCTVAEA AAD DAVNGSKPEVA SGATGQ DK PGG EG +GTRGGKQLTDAASSDSAETSRSDPDLSYGGGK NGL GKF LGDDGG GGGLLDDPRWRWGSVVAVAAVVLLIGLRRR
Sbjct:   13 GPSAPSPRLSADAAEWHPPSFLAKTVENESEKDQQPAEVGELKGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSSAPAITSDEQTAA----VSPPADXXXXXXXXXXXXXXXXXXXXPDSAQGDPATVSDESTPVEVLATEDVKSDSVEVVGDDEAQPDGVESDEATPAPALDDAPSAPSTSEDEGPRNVVPDAALVLEDCAGVAPDEVMATANCTAADISTACCEKPEEPAVAGLTETATAVAATADRQGTPSDGCTVAEATAADADAVNGSKPEVALSGATGQEDKAPGGEEGGDGTRGGKQLTDAASSDSAETSRSDPDLSYGGGKGNGLVGKFLLGDDGGCGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 395
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BLAST of mRNA_Ecto-sp13_S_contig14421.3401.1 vs. uniprot
Match: A0A6H5K876_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K876_9PHAE)

HSP 1 Score: 478 bits (1231), Expect = 4.490e-165
Identity = 306/427 (71.66%), Postives = 318/427 (74.47%), Query Frame = 1 
Query:    1 GPSTPSPRLSADAAEWHPPSFLAKTVEDESEKDQQPAEVGELKGVSPSAASTAAEGVEQERCPGSNTPSGEDEGREDGSTPTPLPRSSPAIISDEPTAAPTAAVSPP------------------------------------------DDGSXXXXXXXXXXXXXXXXXXPDSAQGDSTTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVESDEATPVPALDDAPFTPSTSEDEGPRNVVPDAALVLEDGAGVAPGEVMATANCTAADPSNACGERAGEPAVEGLPDTATAVATTDCQGTPTDGCTVAEAMAADTDAVNGSKPEVASGATGQHDKVPGGGEGREGTRGGKQLTDAASSDSAETSRSDPDLSYGGGKNNGLGGKFSLGDDGGYGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 1155
            GPSTPSPRLSADAAEWHPPSFLAKT+E+ESE+DQQPAEVGEL+G SPSAA+TAAEGVEQE CPGSNTP G+DEGREDGSTP PLP S+PAI SDEPTAA    VSPP                                              XXXXXXXXXXXXXXXXXXPDSAQGDSTTAS                              GVE DEATPVPALDDAP  PSTSED GPRNVVPDAALVLEDGAGVAPGEVMATA CTAADP NAC E+AGEPA+ GL +T TAVAT DCQGTPTDG TV EA AADTDAVNGSKPEVASGATGQHDKVPGG EG EGTRG +QLTDA SSDSAE SRSDPDLSYGGGK N LGGKF LGD+GGY GGLLDDPRWRWGSVVAVAAVVLLIGLRRR
Sbjct:   21 GPSTPSPRLSADAAEWHPPSFLAKTIENESEEDQQPAEVGELQGESPSAAATAAEGVEQEHCPGSNTPPGDDEGREDGSTPAPLPSSAPAIASDEPTAA----VSPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSAQGDSTTASDEPTPLEVLTTEDVKSGSVEVVGDDEAQPDGVERDEATPVPALDDAPSAPSTSEDAGPRNVVPDAALVLEDGAGVAPGEVMATAYCTAADPINACCEKAGEPALAGLSETPTAVATADCQGTPTDGRTVEEATAADTDAVNGSKPEVASGATGQHDKVPGGEEGGEGTRGSEQLTDAVSSDSAENSRSDPDLSYGGGKGNALGGKFLLGDEGGYKGGLLDDPRWRWGSVVAVAAVVLLIGLRRR 443
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14421.3401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEB2_ECTSI5.940e-16678.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K876_9PHAE4.490e-16571.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14421contigEcto-sp13_S_contig14421:964..2358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1158
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001590.1
Cds size1158
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462769.7988198-CDS-Ecto-sp13_S_contig14421:963..18241681462769.7988198-CDS-Ecto-sp13_S_contig14421:963..1824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14421 964..1824 -
1681462769.8163285-CDS-Ecto-sp13_S_contig14421:2061..23581681462769.8163285-CDS-Ecto-sp13_S_contig14421:2061..2358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14421 2062..2358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14421.3401.1prot_Ecto-sp13_S_contig14421.3401.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14421 964..2358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14421.3401.1

>prot_Ecto-sp13_S_contig14421.3401.1 ID=prot_Ecto-sp13_S_contig14421.3401.1|Name=mRNA_Ecto-sp13_S_contig14421.3401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp
GPSTPSPRLSADAAEWHPPSFLAKTVEDESEKDQQPAEVGELKGVSPSAA
STAAEGVEQERCPGSNTPSGEDEGREDGSTPTPLPRSSPAIISDEPTAAP
TAAVSPPDDGSSSIPGDEQEREDGSTPAPPDSAQGDSTTASDEPTPVEVL
ATEDVKSGSVEVVGDDEAQPDGVESDEATPVPALDDAPFTPSTSEDEGPR
NVVPDAALVLEDGAGVAPGEVMATANCTAADPSNACGERAGEPAVEGLPD
TATAVATTDCQGTPTDGCTVAEAMAADTDAVNGSKPEVASGATGQHDKVP
GGGEGREGTRGGKQLTDAASSDSAETSRSDPDLSYGGGKNNGLGGKFSLG
DDGGYGGGLLDDPRWRWGSVVAVAAVVLLIGLRRR*
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mRNA from alignment at Ecto-sp13_S_contig14421:964..2358-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14421.3401.1 ID=mRNA_Ecto-sp13_S_contig14421.3401.1|Name=mRNA_Ecto-sp13_S_contig14421.3401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14421:964..2358- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCAAGCACACCGTCACCCCGCCTTTCGGCTGACGCTGCGGAGTGGCA
CCCGCCGTCGTTTTTGGCGAAAACTGTCGAGGACGAGAGCGAGAAGGACC
AACAACCGGCGGAAGTCGGCGAATTGAAGGGCGTGTCACCCTCCGCGGCA
TCGACGGCGGCAGAGGGTGTAGAGCAAGAGCGTTGCCCCGGGTCGAACAC
GCCTTCTGGAGAGGACGAGGGGCGGGAGGATGGATCGACGCCTACACCGC
TTCCTAGATCTTCGCCTGCGATCATATCCGATGAGCCAACAGCAGCCGTT
CCGCCGGCTGGTGGTAGTTCTTCGGTTCCTGGAGATGAACAAGAGCATGG
GGATGGATCTACGCCTGCACCGCTTCCTAGTTCTGCGCCTGCGATCGCAT
CCGATGAGCCAACAGCAGCCGTTTCTCCGCCGGCTGATGGTAGTTCTTCG
GTCCCTGGCGATGAACAAGAGCGTGGGGATGGATCGACGCCTGCACCGCT
TCCTAGTTCTGCGCCTGCGATCGCATCCGATGAGCCAACAGCAGCCGTTT
CTCCGCCGGATGATGGTAGTTCTTCGATTCCTGGAGATGAACAAGAGCGG
GAGGATGGATCAACGCCTGCACCACCCGACTCCGCCCAGGGTGACTCCAC
AACCGCCTCCGATGAGCCAACACCAGTTGAAGTGTTGGCGACCGAGGATG
TCAAGAGCGGTAGCGTCGAAGTTGTAGGAGATGACGAGGCGCAGCCAGAC
GGGGTGGAGAGCGATGAGGCTACGCCGGTACCTGCTTTGGATGATGCACC
CTTCACGCCGAGCACCTCAGAAGACGAGGGCCCCCGTAATGTCGTGCCGG
ATGCAGCACTTGTGCTAGAGGATGGCGCCGGCGTAGCGCCCGGCGAGGTG
ATGGCCACGGCCAACTGCACCGCCGCCGACCCTAGCAACGCCTGCGGCGA
GAGAGCCGGGGAGCCGGCCGTGGAGGGATTACCGGATACAGCTACTGCCG
TCGCCACCACTGATTGCCAAGGTACGCCCACCGATGGGTGCACGGTAGCA
GAGGCAATGGCCGCGGATACTGACGCCGTGAATGGTTCGAAGCCTGAGGT
TGCGTCGGGAGCAACTGGACAGCACGACAAGGTGCCAGGAGGTGGGGAGG
GTCGAGAAGGCACCCGGGGGGGTAAGCAGCTAACGGACGCGGCGTCCTCC
GATTCCGCGGAGACCAGTAGGTCCGACCCCGACCTCTCGTACGGTGGTGG
CAAGAACAATGGCCTTGGCGGCAAGTTCTCGTTGGGAGATGACGGCGGGT
ATGGGGGGGGGCTCCTGGACGACCCGAGGTGGAGATGGGGCAGCGTCGTG
GCGGTGGCCGCGGTGGTGCTGCTGATTGGCCTGCGTCGTCGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14421:964..2358-

>mRNA_Ecto-sp13_S_contig14421.3401.1 ID=mRNA_Ecto-sp13_S_contig14421.3401.1|Name=mRNA_Ecto-sp13_S_contig14421.3401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14421:964..2358- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCAAGCACACCGTCACCCCGCCTTTCGGCTGACGCTGCGGAGTGGCA
CCCGCCGTCGTTTTTGGCGAAAACTGTCGAGGACGAGAGCGAGAAGGACC
AACAACCGGCGGAAGTCGGCGAATTGAAGGGCGTGTCACCCTCCGCGGCA
TCGACGGCGGCAGAGGGTGTAGAGCAAGAGCGTTGCCCCGGGTCGAACAC
GCCTTCTGGAGAGGACGAGGGGCGGGAGGATGGATCGACGCCTACACCGC
TTCCTAGATCTTCGCCTGCGATCATATCCGATGAGCCAACAGCAGCCCCA
ACAGCAGCCGTTTCTCCGCCGGATGATGGTAGTTCTTCGATTCCTGGAGA
TGAACAAGAGCGGGAGGATGGATCAACGCCTGCACCACCCGACTCCGCCC
AGGGTGACTCCACAACCGCCTCCGATGAGCCAACACCAGTTGAAGTGTTG
GCGACCGAGGATGTCAAGAGCGGTAGCGTCGAAGTTGTAGGAGATGACGA
GGCGCAGCCAGACGGGGTGGAGAGCGATGAGGCTACGCCGGTACCTGCTT
TGGATGATGCACCCTTCACGCCGAGCACCTCAGAAGACGAGGGCCCCCGT
AATGTCGTGCCGGATGCAGCACTTGTGCTAGAGGATGGCGCCGGCGTAGC
GCCCGGCGAGGTGATGGCCACGGCCAACTGCACCGCCGCCGACCCTAGCA
ACGCCTGCGGCGAGAGAGCCGGGGAGCCGGCCGTGGAGGGATTACCGGAT
ACAGCTACTGCCGTCGCCACCACTGATTGCCAAGGTACGCCCACCGATGG
GTGCACGGTAGCAGAGGCAATGGCCGCGGATACTGACGCCGTGAATGGTT
CGAAGCCTGAGGTTGCGTCGGGAGCAACTGGACAGCACGACAAGGTGCCA
GGAGGTGGGGAGGGTCGAGAAGGCACCCGGGGGGGTAAGCAGCTAACGGA
CGCGGCGTCCTCCGATTCCGCGGAGACCAGTAGGTCCGACCCCGACCTCT
CGTACGGTGGTGGCAAGAACAATGGCCTTGGCGGCAAGTTCTCGTTGGGA
GATGACGGCGGGTATGGGGGGGGGCTCCTGGACGACCCGAGGTGGAGATG
GGGCAGCGTCGTGGCGGTGGCCGCGGTGGTGCTGCTGATTGGCCTGCGTC
GTCGATGA
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