mRNA_Ecto-sp13_S_contig10343.340.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10343.340.1
Unique NamemRNA_Ecto-sp13_S_contig10343.340.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: D7FRH9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH9_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 5.560e-67
Identity = 107/118 (90.68%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    1 SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 348
            +L G  + DEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR  + +MEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG
Sbjct:   42 NLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 159          
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: F0Y9Y6_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Y6_AURAN)

HSP 1 Score: 145 bits (367), Expect = 8.250e-42
Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = 1
Query:   25 DEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 348
            +E  LMF RNI D TGLEP++L+N+VQFM++D D N  VSVDETMNMLYAR  + +MEAKLKELFG+ MRETGTQGGEI FL YL AVE+TQL TF+ S+ G+AQ+AK G
Sbjct:   70 EEMLLMFQRNIRDRTGLEPSQLFNVVQFMIFDQDENGLVSVDETMNMLYARYGRVRMEAKLKELFGDDMRETGTQGGEIDFLTYLRAVEKTQLMTFLNSAHGKAQVAKAG 179          
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A7S2UTN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTN0_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.500e-41
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKT 345
            +L G  + +E++LMF RNI D TGLEP+KLYNMVQFM+YD DN   VSVD+TMNMLYAR  +++ME KL+ELFG  MRE G QGGEI FL YL+AVERTQ+NTF+ +S+G+   AKT
Sbjct:  162 NLDGCVDWEEYRLMFQRNIFDRTGLEPSKLYNMVQFMIYDHDNKGLVSVDQTMNMLYARYGRSRMEQKLRELFGTDMRENGKQGGEIDFLTYLQAVERTQMNTFLNTSLGKTTAAKT 278          
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A836CM15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM15_9STRA)

HSP 1 Score: 143 bits (361), Expect = 6.430e-40
Identity = 81/145 (55.86%), Postives = 98/145 (67.59%), Query Frame = 1
Query:    1 SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNM---------------------------VQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 348
            +L G  + +EF+LMF RN+ND TGLEP+KLYNM                           VQFM+YDV+ N  VSVDETMNMLYAR  +A+ME KLKELFGE MRETGTQGGEI F +YL +VERTQL TF+ +++G+A LAK G
Sbjct:  111 NLDGCVDWEEFRLMFNRNVNDRTGLEPSKLYNMSFHAAKPRKKHAGLDDKPSHLLCLQAQVQFMVYDVNGNGLVSVDETMNMLYARYGRARMEVKLKELFGEEMRETGTQGGEITFTQYLASVERTQLATFLGTNMGKAHLAKVG 255          
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A6S9HP31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HP31_HETAK)

HSP 1 Score: 130 bits (328), Expect = 5.750e-35
Identity = 66/118 (55.93%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 348
            +L G  + +EF+LMF RN+ D TGLEPA+LY+M QFM+YD  N   V+VD+TM+MLYAR  +A+MEAKLK LFG  M+E+GT+GG I F +YL AV++TQL TF+ +S+G+    K G
Sbjct:  158 NLDGAVDWEEFRLMFERNVGDRTGLEPAQLYHMAQFMMYDARNTGRVTVDQTMSMLYARYGKAKMEAKLKILFGRDMKESGTEGGAITFQQYLMAVQKTQLETFLATSLGKKIAKKLG 275          
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A812T3T1_SYMMI (Cam1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T3T1_SYMMI)

HSP 1 Score: 121 bits (304), Expect = 3.130e-32
Identity = 61/109 (55.96%), Postives = 81/109 (74.31%), Query Frame = 1
Query:    4 LAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVG 324
            L G  +  EF+LMF RNI D+ GLEP+K++N+ QF++YD + N  VSVDETMNMLYAR  + +ME KLKELFGE M ETG +GGEI + E++ AVE+ Q+ TF  ++ G
Sbjct:   73 LDGCIDWGEFRLMFTRNIMDNCGLEPSKMFNLTQFLIYDHNCNGRVSVDETMNMLYARYGRTKMETKLKELFGENMHETGREGGEISYQEFIRAVEKVQVQTFWGTTQG 181          
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A8J2X371_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X371_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.300e-32
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    4 LAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARQAQ--MEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTGTKGNQAKV 372
            L G    DE +LMF RNI D TGLEP++L+N+V F+++D+D +  VSVDETM +LYAR  +  ME +LK LFG+ M+E G  GGEI F+ YL AVE+TQL TF+QS+ G+A + K   +GN  +V
Sbjct:  124 LDGCVSWDEMRLMFQRNIRDTTGLEPSQLFNVVMFLIFDLDEDGMVSVDETMELLYARYGRHKMEDRLKMLFGDDMKEEGKGGGEIDFVTYLRAVEKTQLATFLQSNYGKALVNKK--QGNPERV 246          
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A7S4HP37_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HP37_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.090e-26
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    4 LAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFG--EG--MRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGR 327
            L G  + +EF LMF RNI D +GLEPA  Y+MVQFM+YD D+N  VS+DETMNMLYAR  + +ME  + +LFG  +G  ++E G QGGEI F+ Y + VE+ Q   F +S +GR
Sbjct:  183 LDGVVDWEEFLLMFERNIRDTSGLEPASFYHMVQFMIYDRDDNGMVSIDETMNMLYARLGREKMETTITKLFGGDDGAPIKEVGQQGGEINFVRYWDVVEKEQTKMFSESELGR 296          
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: K0TBM4_THAOC (EF-hand domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBM4_THAOC)

HSP 1 Score: 102 bits (253), Expect = 4.560e-24
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    4 LAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFGE---GMRETGTQGGEIGFLEYLEAVERTQ 294
            L G  + DEF+L F RNI D +GLEPA  Y+MVQFM+YD DNN  VS+DETMNMLYAR  + +ME+ + +LFG     ++E G QGGEI F +Y   V R Q
Sbjct:  146 LDGVIDWDEFQLNFERNIRDSSGLEPASFYHMVQFMIYDRDNNGLVSIDETMNMLYARVGRTEMESVITKLFGGDDGAIKEDGRQGGEIDFQKYSSVVVREQ 247          
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Match: A0A7R9Z3Q5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z3Q5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.180e-20
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 1
Query:   70 GLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYAR--QAQMEAKLKELFG--EG--MRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGR 327
            GLEPA  Y+MVQFM+YD D+N  VS+DETMNMLYAR  + +ME  + +LFG  +G  ++E G QGGEI F+ Y + V + Q+  F +S +GR
Sbjct:    1 GLEPASFYHMVQFMIYDRDDNGMVSIDETMNMLYARLGREKMETTITKLFGGDDGAPIKEVGQQGGEIDFVRYWDVVAKEQMKMFNESELGR 92          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10343.340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRH9_ECTSI5.560e-6790.68EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
F0Y9Y6_AURAN8.250e-4268.18EF-hand domain-containing protein n=1 Tax=Aureococ... [more]
A0A7S2UTN0_9STRA3.500e-4164.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CM15_9STRA6.430e-4055.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9HP31_HETAK5.750e-3555.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812T3T1_SYMMI3.130e-3255.96Cam1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A8J2X371_9STRA7.300e-3252.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4HP37_9STRA1.090e-2652.63Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0TBM4_THAOC4.560e-2454.90EF-hand domain-containing protein n=1 Tax=Thalassi... [more]
A0A7R9Z3Q5_9STRA1.180e-2052.17Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10343contigEcto-sp13_S_contig10343:3664..5792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score209.5
Seed ortholog evalue8.9e-52
Seed eggNOG ortholog2880.D7FRH9
Model size378
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.EF-hand domain pair
EggNOG OGs2CS8I@1,2RAUZ@2759
Cds size378
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462524.8024006-CDS-Ecto-sp13_S_contig10343:3663..37981681462524.8024006-CDS-Ecto-sp13_S_contig10343:3663..3798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10343 3664..3798 -
1681462524.8160865-CDS-Ecto-sp13_S_contig10343:4809..48661681462524.8160865-CDS-Ecto-sp13_S_contig10343:4809..4866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10343 4810..4866 -
1681462524.8312085-CDS-Ecto-sp13_S_contig10343:5606..57921681462524.8312085-CDS-Ecto-sp13_S_contig10343:5606..5792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10343 5607..5792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10343.340.1prot_Ecto-sp13_S_contig10343.340.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10343 3664..5792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10343.340.1

>prot_Ecto-sp13_S_contig10343.340.1 ID=prot_Ecto-sp13_S_contig10343.340.1|Name=mRNA_Ecto-sp13_S_contig10343.340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
SLAGTRERDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVD
ETMNMLYARQAQMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLN
TFVQSSVGRAQLAKTGTKGNQAKVT*
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mRNA from alignment at Ecto-sp13_S_contig10343:3664..5792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10343.340.1 ID=mRNA_Ecto-sp13_S_contig10343.340.1|Name=mRNA_Ecto-sp13_S_contig10343.340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10343:3664..5792- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCTTGCTGGAACGCGTGAAAGGGACGAGTTTAAGCTCATGTTCTTCCG AAACATTAACGACCACACGGGCCTCGAACCGGCAAAGCTGTACAACATGG TGCAGTTCATGCTGTACGACGTGGACAACAACGTCAATGTGTCCGTGGAC GAGACCATGAATATGCTCTACGCCAGGCAAGCACAAGTACAGGAAAATCT TTACGACTGGATGCTGAACAATCGCAGGCTATATGAGCTTCAGGAAATAG CTGAGGCTTTCTGTGTTGGACCGCATACCGGTATGGAATGCAGGATGAAC GAGATATCATGCACCACGGCAGCCCAGCGGGGCGTTGGTACGCGTTAACG AGGCAAGCGGTTACATAGCGACGTATTGTTGATCGACGAGACGGATTTTC AACCCATTGCTGGGGAAACTGGGTGTGCAACGAGGGAGGTGTGAGATGCG CCTACATGTTGCTGCATACATCAGCCCCGGCTTGTAGCACGTGTGCGGTT GGGTCACACCATCAGCTCTCAAGCGTGAAAGCACACGGCTTAACATGTAC CCTTATTGTCGTATCCCGCAGCACACCACGTCCAAAGTCGGACTCGGTCA GAACAACTTTCCGCAAGCTTGATGCGCTCTACATAATATTCTGAATGACC AACGGTCGCGTTGGTTCGAGTTGGGATAGCTCGTGCATGCGTTTCTACGT TTGTAACTCACCAAGACGTTTCTTGCCCCACACACTGGCGGTCCCTTGAC ACCGTGCTTGTCCGTACGGGTGAAACTGTGCGTTTGACGACTGGAAAACA ACTGGATAATGAAATAAAGATAGCGACCTACCTGTACATGGCGTACGAAT AGGGCTATGACGGCCGGCCGTTTTCCGTCAACGTCGTCACTATCGCTGAC GATCCGATAGGTATGGGCGAACCAAGATGGAAGCGAAGCTGAAGGAGCTG TTCGGGGAAGGCATGCGAGAGACGGGGACGCAGGTGAGGCTTGTGCGTGG TCCTCTCTCTTTTCTTTGCGCAGTAACAACGTTTCAAGTGATTATGTGGA ACTCACAACCAGATGACGCGACGTCCTGCAGTTGTAGCCCCAAATTGTTT CTGCTCAAACGCATTTCTTTCGCTTACGTGTTTGAACAAGGGGTCATGCT CTGCTCATTGCGAACTCCAGAGAAAGCGGGAAGGTCCGAGCGTGACGGAC ACCACGTAGAAGTTTGCAATGACGTTGTCCTGTTCGTGTTTTACGATAGA GTGTTGCACGAGAATAGGTTGACGGAGGGCGGGACTACTTCAGGCTAAGA AAAGAAGATACCAGGATGCTATTGTAGACATGGGATGGCCGTCTGTCGAA GATTGTACGACAAGCCACACGAACAACGGGCCATTTTCGTGTATTCCAAC GGGTAAATATCCAGCTCAGCGGGAGTCGGTGTATGCTTGTGTAAGGCGTC CCATTCATCCTGGACGTCAGTTTCTACACTGTTACGGTTTCCATGCGTGA TCCCGGTGTACTTTCAGGGTTGTTTCAGTTACTATACGTATTGTGGAAAC ATACCAGAGACAAGACAGAGCCTAGGCAAACATTTTGATACTTGTACCAC CGAATAGACACGGCGGCGCCCATTCCAAAGAAGGATCCCAAAGGAAACAC TTTTCGCGCAGCGTCGGCGATATTGGTCAGTTCAAACAAGGGCTTGACTG CTTCAATAGATTGGCGCCTCGGAGAATTTTCCGATATGTTGCTTTCTTCC AGAGCTCGCTGCCTCGGCGGTTGTTTTGGTGTTCAGATAAAGGTCCGTGC CCATGGGGAAAAAAAATCTGTTGCCTGACCCCGGCACGAGATGGAGAGTA TCACCCGACCGAATCGATCTCAGCGGCAGGAACGTTTCGGCTTGCGCGCC CCTACAGTAATTCCACCAAGCAACGCCGGGGTGACAGGATGTTCGGTCAT GTAGATAAGTAACACATTTTCGTCCCAATGCGTTGACAATGTAGGGCGGT GAAATAGGTTTCTTGGAGTACTTGGAAGCCGTGGAGAGGACGCAGCTCAA CACCTTCGTGCAGTCTTCCGTTGGGCGCGCGCAGCTAGCGAAGACAGGTA CGAAGGGAAACCAAGCGAAAGTTACTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10343:3664..5792-

>mRNA_Ecto-sp13_S_contig10343.340.1 ID=mRNA_Ecto-sp13_S_contig10343.340.1|Name=mRNA_Ecto-sp13_S_contig10343.340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10343:3664..5792- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCTTGCTGGAACGCGTGAAAGGGACGAGTTTAAGCTCATGTTCTTCCG
AAACATTAACGACCACACGGGCCTCGAACCGGCAAAGCTGTACAACATGG
TGCAGTTCATGCTGTACGACGTGGACAACAACGTCAATGTGTCCGTGGAC
GAGACCATGAATATGCTCTACGCCAGGCAAGCACAAATGGAAGCGAAGCT
GAAGGAGCTGTTCGGGGAAGGCATGCGAGAGACGGGGACGCAGGGCGGTG
AAATAGGTTTCTTGGAGTACTTGGAAGCCGTGGAGAGGACGCAGCTCAAC
ACCTTCGTGCAGTCTTCCGTTGGGCGCGCGCAGCTAGCGAAGACAGGTAC
GAAGGGAAACCAAGCGAAAGTTACTTGA
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