mRNA_Ecto-sp13_S_contig14420.3400.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14420.3400.1
Unique NamemRNA_Ecto-sp13_S_contig14420.3400.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: A0A6H5JZ77_9PHAE (Glyco_hydro_114 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ77_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.180e-64
Identity = 101/107 (94.39%), Postives = 102/107 (95.33%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYNSGNSVCDEANALGL 321
            A EPDNMMVY EGSSTGVSVSEAEQIEYNSWFADIVHA GMGVGLKNAVELVPILVNKFDFALNEECHEWNEC VYEDTFLAEGKPV+NVEYN GNSVCDEANALGL
Sbjct:  251 AVEPDNMMVYTEGSSTGVSVSEAEQIEYNSWFADIVHAYGMGVGLKNAVELVPILVNKFDFALNEECHEWNECNVYEDTFLAEGKPVYNVEYNLGNSVCDEANALGL 357
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: UPI001F4E8089 (endo alpha-1,4 polygalactosaminidase n=1 Tax=Pseudomonas sp. A3.4 TaxID=2919919 RepID=UPI001F4E8089)

HSP 1 Score: 106 bits (265), Expect = 4.300e-26
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYNS-GNSVCDEANALGL 321
            A EPDN+  Y   +S G+ +++A+Q+++N W A   HA  + + LKNAVELVP LVN FDFALNE C+ +NEC  Y + F A+GK VF  EY    N +C++ANA G 
Sbjct:  141 AVEPDNVDGY--SNSNGLGLTKADQLDFNRWLASAAHARNLAIALKNAVELVPDLVNHFDFALNESCYRYNECNAY-NAFTAQGKAVFVAEYRKYNNKLCNKANASGF 245
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: A0A1H7R5T2_9GAMM (Glyco_hydro_114 domain-containing protein n=2 Tax=Atopomonas hussainii TaxID=1429083 RepID=A0A1H7R5T2_9GAMM)

HSP 1 Score: 102 bits (254), Expect = 1.710e-24
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYNS-GNSVCDEANALG 318
            A EPDN+  Y   +  G+ +SEA+Q+++N W AD  HA  +G+ LKNAVEL+P LVN FDFALNE C+ +NEC  Y   F A+GK VF  EY      +C++A + G
Sbjct:  137 AVEPDNIDGY--SNDNGLGLSEADQVDFNRWLADQAHARQLGIALKNAVELIPQLVNHFDFALNESCYRYNECGGY-SAFTAQGKAVFIAEYRKYSTKLCNKAASSG 240
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: A0A1G3E0C0_9GAMM (Glyco_hydro_114 domain-containing protein n=1 Tax=Pseudomonadales bacterium RIFCSPHIGHO2_02_FULL_60_43 TaxID=1802005 RepID=A0A1G3E0C0_9GAMM)

HSP 1 Score: 99.0 bits (245), Expect = 1.990e-23
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYNSGNS-VCDEANALG 318
            A EPDN+  Y  G+  G+ +SEA QI+YN W +   H + + + LKNAVEL+P LV+ FDFALNE C+ + EC  Y   F  +GK VF  EY S NS +C +A+A G
Sbjct:  107 AVEPDNVDGYSNGN--GLGLSEANQIDYNRWLSQQAHEHNLAIALKNAVELIPALVDDFDFALNESCYAYKECEAYR-LFRQQGKAVFIAEYRSYNSNMCSKASASG 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: A0A654BBT4_9PSED (Glyco_hydro_114 domain-containing protein n=4 Tax=Pseudomonas TaxID=286 RepID=A0A654BBT4_9PSED)

HSP 1 Score: 99.0 bits (245), Expect = 3.400e-23
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYNSGNS-VCDEANALG 318
            A EPDN+  Y  G+  G+ +SEA QI+YN W +   H + + + LKNAVEL+P LV+ FDFALNE C+ + EC  Y   F  +GK VF  EY S NS +C +A+A G
Sbjct:  133 AVEPDNVDGYSNGN--GLGLSEANQIDYNRWLSQQAHEHNLAIALKNAVELIPALVDDFDFALNESCYAYKECEAYR-LFRQQGKAVFIAEYRSYNSNMCSKASASG 236
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: N6VZR9_9GAMM (Polysaccharide hydrolase n=2 Tax=Marinobacter TaxID=2742 RepID=N6VZR9_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 8.390e-23
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEW-NECVVYEDTFLAEGKPVFNVEY 276
            A EPDN+  Y+    T   +S A+Q+ YN+W A   H  G+ VGLKN ++ +  L   FDFA+NE+C+ + NECV+YEDTFLA GK VFN EY
Sbjct:  188 AVEPDNVDAYLNDDETRGLISAADQLAYNTWLAGAAHDRGLSVGLKNDLDQLDALAEHFDFAVNEQCYAYGNECVLYEDTFLAAGKAVFNQEY 280
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: A0A7S1VG85_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VG85_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.810e-22
Identity = 47/108 (43.52%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYN-SGNSVCDEANALGL 321
            A EPDNM  Y+    TG+S++ ++Q+EYN + A+  H  G+ VG+KN +E + +LV+ FD+ALNE+C ++NEC  Y + F    K VF VEYN + +  C  ANA+  
Sbjct:  212 AVEPDNMDAYLNNEETGLSLTYSDQLEYNIFIAEAAHEVGLSVGIKNDIEQLDVLVDHFDWALNEQCFQYNECANYTE-FTNVDKAVFGVEYNVAADDFCSTANAMNF 318
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: A0A4P9WWK1_9FUNG (Alpha-galactosidase (Fragment) n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9WWK1_9FUNG)

HSP 1 Score: 95.9 bits (237), Expect = 5.110e-22
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYNSGNS-----VCDEANALGL 321
            A +PDN+  Y   + +G  ++ A+Q+EYN + +D  H  G+GVGLKN+V  +  LV+ FDFA+NE+C E+NEC  Y   F++  KPVFN+EY   +S     VC +A  LG+
Sbjct:  126 AVDPDNVDGY--SNKSGFDLTAADQLEYNKFLSDTAHGLGLGVGLKNSVAQIADLVDSFDFAINEQCFEYNECGDY-SKFISAKKPVFNIEYKQSDSEFSSQVCPKAMELGI 234
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: A0A1I3G4E6_9PSED (Glyco_hydro_114 domain-containing protein n=2 Tax=Pseudomonas guineae TaxID=425504 RepID=A0A1I3G4E6_9PSED)

HSP 1 Score: 94.0 bits (232), Expect = 2.860e-21
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYNS-GNSVCDEA 306
            A EPDN+  Y   +S G+ +S+A+QI+YN W +   H++ + + LKNAVEL+P LV+ FDFALNE C+ + EC  Y   F  +GK VF  EY S  N++C +A
Sbjct:  133 AVEPDNVDGY--SNSNGLQLSKADQIDYNRWLSQQAHSHDLAIALKNAVELIPALVDDFDFALNESCYAYKECDDYR-LFRQQGKAVFIAEYRSYNNNMCSKA 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Match: A0A2T5P5D2_9PSED (Glyco_hydro_114 domain-containing protein n=1 Tax=Pseudomonas mangrovi TaxID=2161748 RepID=A0A2T5P5D2_9PSED)

HSP 1 Score: 94.0 bits (232), Expect = 2.860e-21
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:    1 AQEPDNMMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILVNKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYNSGNS-VCDEANALG 318
            A EPDN+  Y   +S G+ ++EA+Q++YN W +   H   + + LKNAVELVP LV+ FDFALNE C+ + EC  Y   F  +GK VF  EY S NS +C +A   G
Sbjct:  133 AVEPDNVDGY--SNSNGLRLTEADQVDYNRWLSRQAHYRDLAIALKNAVELVPQLVDDFDFALNESCYAYKECAAYR-AFRQQGKAVFIAEYRSYNSNMCAKAATAG 236
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14420.3400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ77_9PHAE1.180e-6494.39Glyco_hydro_114 domain-containing protein n=2 Tax=... [more]
UPI001F4E80894.300e-2649.07endo alpha-1,4 polygalactosaminidase n=1 Tax=Pseud... [more]
A0A1H7R5T2_9GAMM1.710e-2448.60Glyco_hydro_114 domain-containing protein n=2 Tax=... [more]
A0A1G3E0C0_9GAMM1.990e-2348.60Glyco_hydro_114 domain-containing protein n=1 Tax=... [more]
A0A654BBT4_9PSED3.400e-2348.60Glyco_hydro_114 domain-containing protein n=4 Tax=... [more]
N6VZR9_9GAMM8.390e-2350.54Polysaccharide hydrolase n=2 Tax=Marinobacter TaxI... [more]
A0A7S1VG85_9STRA3.810e-2243.52Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A4P9WWK1_9FUNG5.110e-2243.75Alpha-galactosidase (Fragment) n=2 Tax=Caulochytri... [more]
A0A1I3G4E6_9PSED2.860e-2146.60Glyco_hydro_114 domain-containing protein n=2 Tax=... [more]
A0A2T5P5D2_9PSED2.860e-2146.73Glyco_hydro_114 domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14420contigEcto-sp13_S_contig14420:440..1035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score201.1
Seed ortholog evalue2.5e-49
Seed eggNOG ortholog2880.D7FPZ5
Model size321
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Endo alpha-1,4 polygalactosaminidase
EggNOG OGs2RCTR@2759,COG3868@1
Cds size303
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462769.744893-UTR-Ecto-sp13_S_contig14420:439..4571681462769.744893-UTR-Ecto-sp13_S_contig14420:439..457Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14420 440..457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462769.758774-CDS-Ecto-sp13_S_contig14420:457..5691681462769.758774-CDS-Ecto-sp13_S_contig14420:457..569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14420 458..569 +
1681462769.7687676-CDS-Ecto-sp13_S_contig14420:844..10351681462769.7687676-CDS-Ecto-sp13_S_contig14420:844..1035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14420 845..1035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14420.3400.1prot_Ecto-sp13_S_contig14420.3400.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14420 458..1035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14420.3400.1

>prot_Ecto-sp13_S_contig14420.3400.1 ID=prot_Ecto-sp13_S_contig14420.3400.1|Name=mRNA_Ecto-sp13_S_contig14420.3400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MMVYIEGSSTGVSVSEAEQIEYNSWFADIVHANGMGVGLKNAVELVPILV
NKFDFALNEECHEWNECVVYEDTFLAEGKPVFNVEYNSGNSVCDEANALG
L
back to top

mRNA from alignment at Ecto-sp13_S_contig14420:440..1035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14420.3400.1 ID=mRNA_Ecto-sp13_S_contig14420.3400.1|Name=mRNA_Ecto-sp13_S_contig14420.3400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14420:440..1035+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCAGGAACCTGACAACATGATGGTTTACATCGAGGGTTCCTCGACTGG
CGTCAGCGTGTCCGAAGCGGAACAGATCGAGTACAACTCCTGGTTCGCTG
ACATCGTTCACGCTAACGGCATGGGGGTCGGTAAGTCTTTTCTTGTAAGC
TGTTGAATGTGCCAATGCTGGACGGGTGTCTTTCTTGGTTTCTTGTTTTT
TAGTGCGCCGTCCTGGACTTCAGGGCCCAGGGCCTGCGCTTGCGTTCTGT
ACATGTCATATTCGCCCACATTCGTTTACACTACGCGTCCATGCCCGTCG
GGCCGAGTAGTGCACGTGTTAAACCGTTCGGACCTGAAACTGGGCGTTGC
TTGTCATGTGTCTCATTAACACTGCCCTTGTCCCCTCTCTCTTGACCGTC
ACCAGGTCTTAAGAACGCGGTGGAGTTGGTCCCGATTCTCGTCAACAAGT
TCGACTTCGCTCTGAACGAGGAGTGCCACGAGTGGAACGAGTGTGTTGTT
TACGAGGATACCTTCCTTGCGGAGGGCAAGCCCGTGTTCAACGTCGAGTA
TAACTCGGGCAATTCCGTGTGCGACGAGGCGAACGCCCTCGGCCTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14420:440..1035+

>mRNA_Ecto-sp13_S_contig14420.3400.1 ID=mRNA_Ecto-sp13_S_contig14420.3400.1|Name=mRNA_Ecto-sp13_S_contig14420.3400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14420:440..1035+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGTTTACATCGAGGGTTCCTCGACTGGCGTCAGCGTGTCCGAAGC
GGAACAGATCGAGTACAACTCCTGGTTCGCTGACATCGTTCACGCTAACG
GCATGGGGGTCGGTCTTAAGAACGCGGTGGAGTTGGTCCCGATTCTCGTC
AACAAGTTCGACTTCGCTCTGAACGAGGAGTGCCACGAGTGGAACGAGTG
TGTTGTTTACGAGGATACCTTCCTTGCGGAGGGCAAGCCCGTGTTCAACG
TCGAGTATAACTCGGGCAATTCCGTGTGCGACGAGGCGAACGCCCTCGGC
CTT
back to top