mRNA_Ecto-sp13_S_contig14410.3391.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14410.3391.1
Unique NamemRNA_Ecto-sp13_S_contig14410.3391.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14410.3391.1 vs. uniprot
Match: A0A6H5KE69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE69_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.500e-15
Identity = 35/41 (85.37%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  154 NNRDGRHG--TRSRPTLFGMRRSCSECGRTKKRCDGQQPCG 270
            NN DGR G  T SRPTLFGMRRSCSECGR KKRCDGQQPCG
Sbjct:   14 NNSDGRQGQGTCSRPTLFGMRRSCSECGRKKKRCDGQQPCG 54
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BLAST of mRNA_Ecto-sp13_S_contig14410.3391.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.010e-10
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  154 NNRDGRHGTRSRPTLFGMRRSCSECGRTKKRCDGQQPC 267
            N+ DG  GT  RPTL GMRRSC+ECGR KKRCDGQQPC
Sbjct:   12 NDNDGEKGTCLRPTLPGMRRSCTECGRKKKRCDGQQPC 49
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BLAST of mRNA_Ecto-sp13_S_contig14410.3391.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.930e-8
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:  124 MDSIGVYSDRNNRDGRHGTRSRPTLFGMRRSCSECGRTKKRCDGQQPC 267
            MD+ G    + N D    T  RP L G+RRSCSECGR KKRCDGQ+PC
Sbjct:    1 MDTSGTEPSKGNNDDGTATCLRPILPGIRRSCSECGRKKKRCDGQRPC 48
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BLAST of mRNA_Ecto-sp13_S_contig14410.3391.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-7
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  157 NRDGRHGTRSRPTLFGMRRSCSECGRTKKRCDGQQPCG 270
            N DGR  T   PTL GMRRSCSECGR KK CDG++PCG
Sbjct:    7 NSDGRKETCLPPTLPGMRRSCSECGRKKKSCDGRRPCG 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14410.3391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KE69_9PHAE6.500e-1585.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYW4_9PHAE7.010e-1076.32Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU16_ECTSI2.930e-858.33Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU13_ECTSI1.370e-771.05Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14410contigEcto-sp13_S_contig14410:1425..1697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size274
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462769.2224429-CDS-Ecto-sp13_S_contig14410:1424..16971681462769.2224429-CDS-Ecto-sp13_S_contig14410:1424..1697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14410 1425..1697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14410.3391.1prot_Ecto-sp13_S_contig14410.3391.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14410 1425..1697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14410.3391.1

>prot_Ecto-sp13_S_contig14410.3391.1 ID=prot_Ecto-sp13_S_contig14410.3391.1|Name=mRNA_Ecto-sp13_S_contig14410.3391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
PAPLQTQRGRALCVARDTKRLTSNKKNTDSLVVTRATAKPSMDSIGVYSD
RNNRDGRHGTRSRPTLFGMRRSCSECGRTKKRCDGQQPCG*
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mRNA from alignment at Ecto-sp13_S_contig14410:1425..1697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14410.3391.1 ID=mRNA_Ecto-sp13_S_contig14410.3391.1|Name=mRNA_Ecto-sp13_S_contig14410.3391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14410:1425..1697+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCCCCTTGCAAACTCAGAGGGGACGAGCTCTATGCGTGGCCAGAGA
CACGAAACGCCTGACGTCCAACAAAAAAAACACGGACTCACTCGTCGTTA
CGAGAGCAACAGCGAAACCATCCATGGATTCGATAGGAGTGTACTCCGAC
AGGAACAACCGCGATGGTCGGCACGGAACACGCTCGCGGCCAACCCTGTT
TGGAATGCGGCGGAGCTGCTCAGAATGTGGACGTACAAAGAAGCGTTGTG
ATGGTCAACAGCCTTGTGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14410:1425..1697+

>mRNA_Ecto-sp13_S_contig14410.3391.1 ID=mRNA_Ecto-sp13_S_contig14410.3391.1|Name=mRNA_Ecto-sp13_S_contig14410.3391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14410:1425..1697+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCCCCTTGCAAACTCAGAGGGGACGAGCTCTATGCGTGGCCAGAGA
CACGAAACGCCTGACGTCCAACAAAAAAAACACGGACTCACTCGTCGTTA
CGAGAGCAACAGCGAAACCATCCATGGATTCGATAGGAGTGTACTCCGAC
AGGAACAACCGCGATGGTCGGCACGGAACACGCTCGCGGCCAACCCTGTT
TGGAATGCGGCGGAGCTGCTCAGAATGTGGACGTACAAAGAAGCGTTGTG
ATGGTCAACAGCCTTGTGGGTAA
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