mRNA_Ecto-sp13_S_contig14406.3388.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14406.3388.1
Unique NamemRNA_Ecto-sp13_S_contig14406.3388.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: D7G2Q4_ECTSI (Fatty acid hydroxylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q4_ECTSI)

HSP 1 Score: 563 bits (1451), Expect = 5.940e-202
Identity = 296/308 (96.10%), Postives = 300/308 (97.40%), Query Frame = 1
Query:    1 MSWFPKPPLLDGLLADVLVRGAGGGAAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPADEDRGERKKNLGGDVTPPANGASSDSTAAENKEKAG 924
            MSWFP  PLLDGLLADVLV+GAGGG AFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWG SELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQY MLWDW+MGSLK YPA+EDRGERK+NLGG VTPPANGA SDSTAAENKEKAG
Sbjct:    1 MSWFPTLPLLDGLLADVLVKGAGGGVAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGVSELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWVMGSLKAYPAEEDRGERKRNLGGGVTPPANGARSDSTAAENKEKAG 308          
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A4D9CVT2_9STRA (Fatty acid hydroxylase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVT2_9STRA)

HSP 1 Score: 257 bits (656), Expect = 2.330e-81
Identity = 134/276 (48.55%), Postives = 176/276 (63.77%), Query Frame = 1
Query:   46 DVLVRGAGGGAAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIP----FLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYP------ADEDRGERKK 843
            D+ +RGAGGGA F L NA  TW   H+ AW  ++L GLE +A +V  FGR  +  +I  RGKHLD     D  F+AFN+ +T +F+YH +++LW +    +VAW   E+   +   AL   +VVYD                        RQKAP+RGN DAVNVHP+EF+ GEYNHL A++LVSR+++PVH ++A AFIV GGF ASLNHTRFDI+ P     +Y+VR+HD+HHW+PE NYGQY+MLWD++ GS KPYP      +   RG RKK
Sbjct:   19 DLFLRGAGGGA-FLLWNA-HTWLSHHFIAWGLLVLAGLEILACLVFAFGRLRRVPSIPMRGKHLDTLDTRDLGFIAFNKLATTLFSYHLLRFLWLSKGPAQVAWRVEEMTWQNTCLALPLLFVVYDFAYTLFHRALHHRALYKHIHKHHHRQKAPSRGNTDAVNVHPVEFVAGEYNHLAAIYLVSRFLLPVHALTALAFIVLGGFLASLNHTRFDIQTPGVLSSVYQVRFHDVHHWFPESNYGQYLMLWDYVFGSFKPYPEVKGAASGGGRGGRKK 292          
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S2TQE1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQE1_9EUKA)

HSP 1 Score: 217 bits (553), Expect = 4.390e-66
Identity = 122/261 (46.74%), Postives = 162/261 (62.07%), Query Frame = 1
Query:   52 LVRGAGGGAAFSLVNA----ADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPADE 822
            +V G+   +   L++A    A TW+WWH+  +  VI LGLE +  +V      S A  I  RGKHLDEF  +D  F+ FN+ +  VFTYH +++ + A     + W   +LG+ +G  +LVA ++VYD F        X  XXXXXXX    RQ+APTRGN DA+NVHP EF+ GEY HL+A  LVSR V+ +HV +   F+  GG  ASLNHTR+D+    +Y V+ HD+HH  PE NYGQYIMLWD LMGS KPY  ++
Sbjct:   13 IVCGSRRSSTMMLMSAELHDASTWEWWHFAGFALVIYLGLELLNVLV--INAFSSANQIPIRGKHLDEFEFIDNAFIQFNKLAIIVFTYHMIRFTFTAK---NICWDIRDLGILNGPSSLVAMHIVYDFFYTLFHRFLXNRXXXXXXXKHHHRQRAPTRGNLDAINVHPFEFVVGEYIHLVAAFLVSR-VMTIHVGAIAWFVAVGGLLASLNHTRYDLSFLGVYSVKVHDVHHRLPESNYGQYIMLWDKLMGSYKPYTTEK 267          
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S4IH56_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IH56_9EUKA)

HSP 1 Score: 213 bits (543), Expect = 8.310e-65
Identity = 106/248 (42.74%), Postives = 150/248 (60.48%), Query Frame = 1
Query:   73 GAAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRP-RGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYP 813
            GA   ++  +  W+W+   AW+  I+  LE ++ +V +   A    ++ P +GK LDE   +D  ++ FNR  T VFT+  +Q+ WY+    +V W    LG+ + LGA+VA ++VYD F                      RQ  PTRGN DA+NVHP+EF+ GEYNHLL ++LVSR V+ +HV+S   F++ G   ASLNHTRFDI++  L++V+YHDIHHWYP  N+GQY MLWD + G  K YP
Sbjct:   11 GAVAFIMFESQYWEWYQICAWVVGIIAALEILSRVVMI---AQPFFSVIPAKGKPLDELATIDLCYIWFNRLCTPVFTFQVIQFCWYSS---QVVWALDSLGILNTLGAMVAMFIVYDFFYAIYHRSLHIRGIYKYIHKHHHRQTVPTRGNVDAINVHPVEFVMGEYNHLLVMYLVSR-VIEIHVLSVLLFLLIGATLASLNHTRFDIQVSKLFQVKYHDIHHWYPYANFGQYTMLWDHVFGWFKDYP 251          
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S1U5D6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5D6_9STRA)

HSP 1 Score: 209 bits (531), Expect = 4.030e-63
Identity = 111/247 (44.94%), Postives = 147/247 (59.51%), Query Frame = 1
Query:   70 GGAAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPY 810
            G AA  L+ A +TW W     +  V+L GLE V+  V      S A  I  +GKH D+ T  D+ F+AFN+ +  VFT+H + Y+W  P   +V W   +    +   A    YVVYD F                       QKAP+RGN DAVNVHP EF+ GEYNH+LAL +++ ++  VHV++AG FI+AGG  ASLNHTR+D+ IP +Y+V+YHD+HH  P+ NYGQYIMLWD LMGS + Y
Sbjct:    8 GAAAVELMEA-ETWSWPVRIGYTVVVLGGLELVSRFV--LTAFSGAEKIPIKGKHHDKLTTKDKCFIAFNKATVVVFTWHMLSYIWQNP---KVVWALEDATALNTAAAAALLYVVYDFFYTLFHRFLHVKAIYGYVHKHHHIQKAPSRGNVDAVNVHPFEFVCGEYNHILALFILTTFM-EVHVLAAGLFILAGGALASLNHTRYDVSIPGIYDVKYHDVHHRIPQSNYGQYIMLWDHLMGSFREY 247          
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A061SG51_9CHLO (C-5 sterol desaturase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SG51_9CHLO)

HSP 1 Score: 210 bits (534), Expect = 4.980e-63
Identity = 117/272 (43.01%), Postives = 153/272 (56.25%), Query Frame = 1
Query:   70 GGAAFSLVNAADTW---------QWWHYPAWLSVILLGLEFVAAMVHVFGRA-------SKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIR---IPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPADEDR 828
            GG  F  V++A  +         +WW Y  +   ++L +E ++A V   G              I  RG+HLD     D +F+AFNR +T VFT+HA+Q+LW +P   RV WGA +   AS L AL A +VVYD                        RQ AP+RGN DAVNVHP EFL GEYNHL A+  VSR  VPVH  +A  FIV+GG  ASLNHTR DI    +P+L++V+YHD+HHW P  N+GQY M+WD++  S + YP +  R
Sbjct:    9 GGFLFKAVSSAIFFADKLFSLGGEWWMYALFGLAVVLAMELLSASVPRIGSVILTLQGRRNTGLIPARGRHLDALEATDYVFIAFNRLTTPVFTFHAMQFLWQSP---RVVWGARDATAASVLLALAAMFVVYDSTYCLFHRALHHRSVYKHVHKHHHRQMAPSRGNVDAVNVHPFEFLPGEYNHLFAIWAVSR-AVPVHAGAALLFIVSGGVLASLNHTRLDIASPVLPWLFKVKYHDVHHWDPSVNFGQYTMIWDYVFRSFRAYPGEGGR 276          
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S0GVS8_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GVS8_9EUKA)

HSP 1 Score: 208 bits (530), Expect = 1.050e-62
Identity = 106/241 (43.98%), Postives = 146/241 (60.58%), Query Frame = 1
Query:   88 LVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPY 810
            +++   TWQ WH+  +  VI LG+E ++ +V +  + +K   I  RGKHLD F  +D +++  N+ +TAVF YH ++Y+  A     V W    L + +   ++V  ++VYD F                      RQ+APTRGN DA+NVHP EF+ GEY HLLA HLV++Y+V VH+V+   F+V GG  ASLNHTRFD     +Y V+ HD+HH  PE NYGQYIMLWD +MGS KPY
Sbjct:   26 VIHQPGTWQVWHFGVFSVVIYLGMEILSHIVPLVFQ-NKTNLIPMRGKHLDVFETVDHVYININKIATAVFVYHMLKYVNAA----NVEWDIGGLSVVNFPVSVVLMHIVYDFFYTIFHRVLHNRQLYRFVHKHHHRQRAPTRGNLDAINVHPFEFVVGEYLHLLAAHLVTKYLVKVHIVAIAWFVVVGGILASLNHTRFDFSFLGIYSVKVHDVHHRLPESNYGQYIMLWDKIMGSYKPY 261          
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S1SIK8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SIK8_9CHLO)

HSP 1 Score: 202 bits (514), Expect = 5.470e-60
Identity = 133/244 (54.51%), Postives = 169/244 (69.26%), Query Frame = 1
Query:  118 WHYPAWLSVILLGLEFVAAMVHVFGRASKAAT-------IRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFL---YEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPAD 819
            W Y  + ++++  +E +AA+V + G  + A         I  RGKHLD F   D  F+AFNR +T +FT+HA+QYLW +P   R A  A+ L  A+   AL+A +VVYDL XXXXXXXXXXXXXXXXXXXXXXRQ AP+RGN DAVNVHP E+L GEYNHL A+ +VSR ++P+H  +A  FIV+GG  ASLNHTR DI+ P L   Y+V+YHDIHHW P  N+GQY MLWD +  S + YP +
Sbjct:   31 WMYTVFAALVMAAMELLAALVPLIGTLTLAIQGRKGSPGIAVRGKHLDAFGATDYAFMAFNRLTTPLFTFHALQYLWLSPHILRSARDATALSTAA---ALLALFVVYDLTXXXXXXXXXXXXXXXXXXXXXXRQMAPSRGNTDAVNVHPFEYLPGEYNHLFAIWVVSR-LMPLHAATALFFIVSGGVLASLNHTRLDIKSPLLTTVYQVKYHDIHHWDPSVNFGQYTMLWDHVFRSFRAYPGE 270          
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S0W795_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W795_9CRYP)

HSP 1 Score: 200 bits (508), Expect = 2.260e-59
Identity = 113/253 (44.66%), Postives = 155/253 (61.26%), Query Frame = 1
Query:   76 AAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPADEDRGE 834
            AAF   +A+ TW    Y +W +VI+LGLE VA +V    +      +  RG HLD  T  D  F+ +N+  TAVFTYHA+++ WY+     V WG  EL L + + AL   +VVYD F                XXXXXX Q AP+RG ADAVNVHP EF+ GEY HLLA+     ++VP H+++A  F+V GG  ASLNHTRF++ +  +++V++HD HH  P  NYGQYIMLWD++ G+   YP ++ +G+
Sbjct:   27 AAFKFWDAS-TWTPLQYLSWCTVIVLGLEIVAWLVSNIPKLFNTVILPKRGSHLDVLTSKDIAFICWNKFCTAVFTYHALRFCWYSK---TVKWGLDELTLLNTVVALGGLFVVYDFFYHIFHRALHLRSVYKYXXXXXXNQHAPSRGTADAVNVHPFEFVCGEYCHLLAI-----FLVPCHIMTAALFVVGGGVVASLNHTRFNVSLLNVFDVKFHDQHHVVPTVNYGQYIMLWDYVFGTYHEYPHEKLKGQ 270          
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A482SFA9_9ARCH (Fatty acid hydroxylase family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFA9_9ARCH)

HSP 1 Score: 195 bits (495), Expect = 1.960e-57
Identity = 99/228 (43.42%), Postives = 136/228 (59.65%), Query Frame = 1
Query:  127 PAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPY 810
            P +  VI++G+E ++ +V +   ++ +  I  + KHLDEF+  D LF+  N+  T+ F YH +   +Y+P    + W  SE  +++ LG+LV  Y+ YD F                      RQKAP+RGN DA+NVHP EF  GEY     LHLV+ Y +P H+ +   FI+ GG  ASLNHTR+DI IP LY V+ HD+HH  PE NYGQYIMLWD+L GS +PY
Sbjct:   41 PGFCIVIVVGMEILSHIVPIVFGSTTSGRIPIKAKHLDEFSSTDTLFIWINKLLTSFFVYHLLYVCYYSP---TIKWQWSEATMSNTLGSLVLFYIFYDFFYMNFHRILHIKELYSIIHKHHHRQKAPSRGNLDAINVHPFEFFVGEY-----LHLVTVYFIPCHMYAVAFFIIVGGVLASLNHTRYDIVIPGLYSVKVHDVHHRLPESNYGQYIMLWDYLFGSYRPY 260          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q4_ECTSI5.940e-20296.10Fatty acid hydroxylase domain-containing protein n... [more]
A0A4D9CVT2_9STRA2.330e-8148.55Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S2TQE1_9EUKA4.390e-6646.74Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S4IH56_9EUKA8.310e-6542.74Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S1U5D6_9STRA4.030e-6344.94Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A061SG51_9CHLO4.980e-6343.01C-5 sterol desaturase n=2 Tax=Tetraselmis sp. GSL0... [more]
A0A7S0GVS8_9EUKA1.050e-6243.98Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]
A0A7S1SIK8_9CHLO5.470e-6054.51Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S0W795_9CRYP2.260e-5944.66Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A482SFA9_9ARCH1.960e-5743.42Fatty acid hydroxylase family protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14406contigEcto-sp13_S_contig14406:1690..3779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score570.1
Seed ortholog evalue6.4e-160
Seed eggNOG ortholog2880.D7G2Q4
Model size927
KEGG rclassRC00904
KEGG koko:K00227
KEGG ReactionR07215,R07486,R07491,R07505
KEGG Pathwayko00100,ko01100,ko01110,ko01130,map00100,map01100,map01110,map01130
KEGG ModuleM00101,M00102
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.C-5 sterol desaturase activity
EggNOG OGsCOG3000@1,KOG0872@2759
Ec32 ortholog descriptionFatty acid hydroxylase
Ec32 orthologEc-11_003100.1
EC1.14.19.20
Cds size927
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462768.9125602-CDS-Ecto-sp13_S_contig14406:1689..24031681462768.9125602-CDS-Ecto-sp13_S_contig14406:1689..2403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14406 1690..2403 +
1681462768.9271433-CDS-Ecto-sp13_S_contig14406:3566..37791681462768.9271433-CDS-Ecto-sp13_S_contig14406:3566..3779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14406 3567..3779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14406.3388.1prot_Ecto-sp13_S_contig14406.3388.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14406 1690..3779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14406.3388.1

>prot_Ecto-sp13_S_contig14406.3388.1 ID=prot_Ecto-sp13_S_contig14406.3388.1|Name=mRNA_Ecto-sp13_S_contig14406.3388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
MSWFPKPPLLDGLLADVLVRGAGGGAAFSLVNAADTWQWWHYPAWLSVIL
LGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVF
TYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFYTVFHRV
LHLRGVYKHIHKHHHRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVS
RYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPE
CNYGQYIMLWDWLMGSLKPYPADEDRGERKKNLGGDVTPPANGASSDSTA
AENKEKAG*
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mRNA from alignment at Ecto-sp13_S_contig14406:1690..3779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14406.3388.1 ID=mRNA_Ecto-sp13_S_contig14406.3388.1|Name=mRNA_Ecto-sp13_S_contig14406.3388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14406:1690..3779+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATGGTTCCCGAAACCGCCGCTGCTGGACGGGTTGCTGGCAGATGT TCTGGTGAGAGGCGCGGGCGGCGGGGCGGCGTTCTCCCTCGTCAACGCCG CCGACACCTGGCAGTGGTGGCACTACCCGGCGTGGCTGTCTGTCATACTA CTGGGTCTAGAGTTCGTTGCAGCAATGGTGCACGTCTTCGGCCGGGCGTC TAAGGCGGCGACCATCAGGCCTCGCGGGAAGCACCTCGACGAGTTTACCC CGCTGGACAGGCTATTCGTCGCGTTCAACCGGTGCAGCACCGCCGTGTTC ACCTACCACGCCGTCCAGTACCTCTGGTACGCTCCCTGGGGCGGGCGGGT CGCCTGGGGCGCCTCGGAGCTGGGGCTTGCCAGCGGGCTTGGGGCGCTCG TCGCGCAGTACGTCGTGTACGACCTCTTCTACACGGTGTTCCACAGGGTG CTTCACCTCCGAGGCGTGTACAAGCACATCCACAAGCACCACCACCGGCA GAAGGCGCCCACGCGGGGCAACGCCGACGCCGTCAACGTGCACCCGCTGG AGTTCCTCGGCGGGGAGTACAACCACCTCCTGGCGCTGCACCTAGTCTCG AGGTACGTCGTGCCGGTGCACGTCGTGTCCGCGGGCGCTTTCATCGTCGC CGGTGGATTCTTCGCGTCGCTGAATCACACGCGGTTTGATATCCGCATCC CGTTCTTGTACGAGGTAAGCTCGCATTATACACCGGCGGCATGGGGTATA CCGCACCGCTTGTGTGTTGCAATTTGTGGGTGTGTTTTTGCAATCAGACC CGTCCGTCTAGGTTGCCTTGTACATCATCCTGCTCTTCCAGCACACCTTG AGTTGATCTCCTTGGTTTGAAAGGAAACGCTGTTTGTTTTCAGGCACTGC TGTAGCAGTCCCACCTCCCGCCCTTCCACCTTCCGAGCTATCGATCATCG TGGGTAAACTTACTGCTGTTGTGTGCGCTTTCGGGCTGCCGCGGCGGTGG ACGCCGTTGAAATTATAGAAGTGCATCAGCAGAGCGGCGAGCCCAGCGCA CACAACGCCCACATAGCGGCGTGCGTCCGGGGACAGGCGTGCGTGCGACG GGCGCGACGAGGAGGTGCTCGTGTGTGCGGCCGCCCGTTCACCTCATGTC CTTCAGATCGCCATGCAGCTTAAACATAACCCATCACTCGTGTCTTTCAG ATCACGATGGAGCAAACATAATCGATCGTCTATATCGTCTCCTAAAACCG AAAATTGCTTAATTACTTGAGATTGTTTAGATAAATTAAATTTGCCAGAG CAGTGGCAAGTGCATAAACGATCGATCACGTGTATCCTTCAGTTCACCTC GGGGGAAACATTAACACTACCGATCGATAATCTACGTCTTTCAGGTCCCC TCGGGGAAACATAACCGATCATCGATGTCCTTCCGATCAACTCGGGCAAA CACACACAGATTCACAGATGTCCTGACCGATCACAAGGGACCTACCTTAC TCCGAAAGAGCTACATTTCTGCGACAATCCTTCGGCCGTGTGCGGACGCA AACACACACATCGGGAAGAGGCACGCGTGCTGCATTTGTATACCTGGCAA CGAGCACATCACACGCCGAAGAGCACCAGCAGACGGGCAGGCATAGAGTA GCGACAGATAGGGACGGCACACTCTATTGTCGTCTACAACCGGATTTCCC GCCGACGGAAAGCAAGCAGTCTACAGTACGGACTAAACATTATTGCCCAC ACGCACCAGAAAAAGCGCGTTTTTCCGTGCCACTTTGGACCTTGGCAATC CCCCCCCCCCACCCCCCTCGTCAACCATCGACATGATTTGCACCTTCCCG TGCCGCGTGTGGCCTATCAATATGCAGGTGCGATATCACGACATCCACCA CTGGTACCCGGAATGCAACTACGGGCAGTACATCATGTTGTGGGACTGGT TGATGGGCAGTCTAAAGCCCTATCCCGCGGACGAAGATCGCGGCGAGAGG AAGAAGAACCTTGGCGGCGACGTAACGCCTCCGGCGAATGGCGCGAGCTC CGACAGTACAGCTGCGGAAAACAAGGAAAAGGCGGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14406:1690..3779+

>mRNA_Ecto-sp13_S_contig14406.3388.1 ID=mRNA_Ecto-sp13_S_contig14406.3388.1|Name=mRNA_Ecto-sp13_S_contig14406.3388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14406:1690..3779+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATGGTTCCCGAAACCGCCGCTGCTGGACGGGTTGCTGGCAGATGT
TCTGGTGAGAGGCGCGGGCGGCGGGGCGGCGTTCTCCCTCGTCAACGCCG
CCGACACCTGGCAGTGGTGGCACTACCCGGCGTGGCTGTCTGTCATACTA
CTGGGTCTAGAGTTCGTTGCAGCAATGGTGCACGTCTTCGGCCGGGCGTC
TAAGGCGGCGACCATCAGGCCTCGCGGGAAGCACCTCGACGAGTTTACCC
CGCTGGACAGGCTATTCGTCGCGTTCAACCGGTGCAGCACCGCCGTGTTC
ACCTACCACGCCGTCCAGTACCTCTGGTACGCTCCCTGGGGCGGGCGGGT
CGCCTGGGGCGCCTCGGAGCTGGGGCTTGCCAGCGGGCTTGGGGCGCTCG
TCGCGCAGTACGTCGTGTACGACCTCTTCTACACGGTGTTCCACAGGGTG
CTTCACCTCCGAGGCGTGTACAAGCACATCCACAAGCACCACCACCGGCA
GAAGGCGCCCACGCGGGGCAACGCCGACGCCGTCAACGTGCACCCGCTGG
AGTTCCTCGGCGGGGAGTACAACCACCTCCTGGCGCTGCACCTAGTCTCG
AGGTACGTCGTGCCGGTGCACGTCGTGTCCGCGGGCGCTTTCATCGTCGC
CGGTGGATTCTTCGCGTCGCTGAATCACACGCGGTTTGATATCCGCATCC
CGTTCTTGTACGAGGTGCGATATCACGACATCCACCACTGGTACCCGGAA
TGCAACTACGGGCAGTACATCATGTTGTGGGACTGGTTGATGGGCAGTCT
AAAGCCCTATCCCGCGGACGAAGATCGCGGCGAGAGGAAGAAGAACCTTG
GCGGCGACGTAACGCCTCCGGCGAATGGCGCGAGCTCCGACAGTACAGCT
GCGGAAAACAAGGAAAAGGCGGGGTAG
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