mRNA_Ecto-sp13_S_contig1440.3384.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 457 bits (1176), Expect = 7.320e-148 Identity = 596/650 (91.69%), Postives = 607/650 (93.38%), Query Frame = 1
Query: 208 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 2157
PGPT N+CLNA YVALGETR+GKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAA+ PP+ PKRLSR RVPRLRARHVTWNMPTAAELRSPIFALM+LDHL+FG AFEGSLE V WPRRLESIAFHNFSPFNTPIDLVKWPASLKR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XPFXXXXX GKYXXXXXXXXXXXXXXXXX FDQYSCFXXXXXXXXXXXXXXQLALGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLRFHR SCF XXXXXXX ALGA+XXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX SFDPRSRXXXXXXXXXXXXXXXXX FGA+XXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTLIFD EARXXXXXXXXXXXXXXX+LKFG++F XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFHDLGCNVVVMYSRXXXXXXXXXXXXXXXXXXXGHRFRQSLQGLGIWMPHLQVFRLLDYGVGSDGLLRGIEWPK LRHLTVLARSNLEGVEIPSTIQVCRPDLDG
Sbjct: 29 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 678
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 198 bits (503), Expect = 3.700e-55 Identity = 100/154 (64.94%), Postives = 117/154 (75.97%), Query Frame = 1
Query: 211 GPTRNSCLNAFYVALGETRNGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAANDPPRKPKRLSRMRVPRLRARHVTWNMPTAAELRSPIFALMELDHLEFGGAFEGSLEDVIWPRRLESIAFHNFSPFNTPIDLVKWPASLK 672
G T N CL++ VAL ET +G SWYTSTKELQ ASLEFC+ACR Y +HL VD +IPR LLAAA+ PP PKRL RVPRLRAR VTWNM AAEL +PIFA+ ++D LEFGG F+GSLE V WPRRL+ I F SPFN P++L+KWP SL+
Sbjct: 8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQ 161
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 204 bits (518), Expect = 3.300e-53 Identity = 100/155 (64.52%), Postives = 118/155 (76.13%), Query Frame = 1
Query: 211 GPTRNSCLNAFYVALGETRNGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAANDPPRKPKRLSRMRVPRLRARHVTWNMPTAAELRSPIFALMELDHLEFGGAFEGSLEDVIWPRRLESIAFHNFSPFNTPIDLVKWPASLKR 675
GPTR+SCL VAL ET +GKSWYTSTKELQLASLE CMACR YQTLHL VD PR LLAAA+ P PKRL RVPRLRAR TWN+PTA+ +R+ IFA M++D+LEFG AF GSL+ ++WPRRL++I F SP N +D V WPASL++
Sbjct: 130 GPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRK 284
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 198 bits (504), Expect = 1.130e-52 Identity = 106/198 (53.54%), Postives = 131/198 (66.16%), Query Frame = 1
Query: 175 MDGDVGSGSAKPG--------------------------------PTRNSCLNAFYVALGETRNGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAANDPPRKPKRLSRMRVPRLRARHVTWNMPTAAELRSPIFALMELDHLEFGGAFEGSLEDVIWPRRLESIAFHNFSPFNTPIDLVKWPASLK 672
M+G+ GSGSA+PG PTR CL A VAL ET +GKSWYTSTKELQLASL+FC+ACR QT+HL VD +IPR LLA+A+ PP PKRL RVPRLR+R VTWNMPTAA+LR+PIFA+ ++++LEFG AF SLE V WP L ++ FH+ SPF+ I+LV+WP L+
Sbjct: 1 MEGEDGSGSARPGIRNSVSGSDARKNRRNGGVLMRPSTILRVQKGPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQ 198
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 186 bits (471), Expect = 6.750e-49 Identity = 99/164 (60.37%), Postives = 119/164 (72.56%), Query Frame = 1
Query: 211 GPTRNSCLNAFYVALGETRNGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAANDPPRKPKRLSRMRVPRLRARHVTWNMPTAAELRSPIFALMELDHLEFGGAFEGSLEDVIWPRRLESIA---------FHNFSPFNTPIDLVKWPASLKR 675
GP R+SCLNA VAL ET +GKSWYTSTKE QLASLEFC+ACR +QTL L VD R PR LLAAA+ PP PKRL RVPRLRAR VTW++PTAA LR+ I+++M+ D LEF AFE SLE V WPRRL+++ FH+ S F+ PI V WP +L++
Sbjct: 6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQ 169
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 165 bits (417), Expect = 7.480e-41 Identity = 87/134 (64.93%), Postives = 100/134 (74.63%), Query Frame = 1
Query: 268 NGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAANDPPRKPKRLSRMRVPRLRARHVTWNMPTAAELRSPIFALMELDHLEFGGAFEGSLEDVIWPRRLESIAFHNFSPFNTPIDLVKWPASL 669
+GK WYTSTKELQ ASLEFC+ACR YQTL L VDV+ PR LLAA + P KR R RVPRLRAR V WNMPTA EL+SPIFAL ++ L+FG AFEGSLE V WP+RL+ I F S FN PI+ V++P SL
Sbjct: 3 DGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSL 136
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 158 bits (399), Expect = 2.070e-39 Identity = 88/160 (55.00%), Postives = 106/160 (66.25%), Query Frame = 1
Query: 199 SAKPGPTRNSCLNAFYVALGETRNGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAAN-DPPRKPKRLSRMRVPRLRAR-HVTWNMPTAAELRSPIFALMELDHLEFGGAFEGSLEDVIWPRRLESIAFHNFSPFNTPIDLVKWPASLK 672
S PGP R+SCLNA VAL ET +GKSWYTSTKELQLASL FC ACR +QT+HL VD IPR LLAAA+ PP +S R P A V + E +FA+ ++DHLEFG FEG+LE V WPR L++I H +S F PIDL++WP SL+
Sbjct: 126 STAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQ 285
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 159 bits (402), Expect = 6.440e-39 Identity = 85/130 (65.38%), Postives = 99/130 (76.15%), Query Frame = 1
Query: 208 PGPTRNSCLNAFYVALGETRNGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAANDPPRKPKRLSRMRVPRLRARHVTWNMPTAAELRSPIFALMELDHLEFGGAFEGSLEDV-IWPRR 594
PGP+R+SCLNA +AL ET NG+SWYTSTKELQLASLEFC+ACR YQTLHL VD +IPR LLA A+ PP P+ L R RVPRLRAR VTW M AAEL PIFA+ ++D L+FG E SLE + +W R
Sbjct: 106 PGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG---ETSLEALRLWHGR 232
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 153 bits (387), Expect = 6.150e-36 Identity = 83/143 (58.04%), Postives = 98/143 (68.53%), Query Frame = 1
Query: 247 VALGETRNGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAANDPPRKPKRLSRMRVPRLRARHVTWNMPTAAELRSPIFALMELDHLEFGGAFEGSLEDVIWPRRLESIAFHNFSPFNTPIDLVKWPASLKR 675
+AL E +GK WYTSTKELQLASLEFC+ACR YQ L L VD + PR LLAA + PP KR R RVPRLRAR V WNMPTA ELR+ +FAL +++ L FGG F GSLE V+WP L+ I F + S FN ASL++
Sbjct: 23 LALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFFS-SEFNQXXXXXXXXASLQK 164
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.370e-16 Identity = 61/154 (39.61%), Postives = 87/154 (56.49%), Query Frame = 1
Query: 229 CLNAFYVALGETRNG--KSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRML--LAAANDPPRKPKRLSRMRVPRLRARHVTWNMPTAAELRSPIFALM-ELDHLEFGGAF-EGSLEDVIWPRRLESIAFHNFSPFNTPIDLVKWPASLK 672
CL+AF VAL + G K WYTST +LQLASLEFC ACR+ LH+ VD P L L AN P + RVP ++A +TW PT + L S L L+ L+ + +L+ V+WP+ L+ + + + F P++++ WP+SLK
Sbjct: 9 CLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQAN-----PTAGTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVM-DCTVFIIPLEMMSWPSSLK 156 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1440.3384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1440.3384.1 >prot_Ecto-sp13_S_contig1440.3384.1 ID=prot_Ecto-sp13_S_contig1440.3384.1|Name=mRNA_Ecto-sp13_S_contig1440.3384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=662bp MDGDVGSGSAKPGPTRNSCLNAFYVALGETRNGKSWYTSTKELQLASLEFback to top mRNA from alignment at Ecto-sp13_S_contig1440:2194..12668+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1440.3384.1 ID=mRNA_Ecto-sp13_S_contig1440.3384.1|Name=mRNA_Ecto-sp13_S_contig1440.3384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10475bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1440:2194..12668+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1440:2194..12668+ >mRNA_Ecto-sp13_S_contig1440.3384.1 ID=mRNA_Ecto-sp13_S_contig1440.3384.1|Name=mRNA_Ecto-sp13_S_contig1440.3384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1986bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1440:2194..12668+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |