mRNA_Ecto-sp13_S_contig14392.3382.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14392.3382.1
Unique NamemRNA_Ecto-sp13_S_contig14392.3382.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14392.3382.1 vs. uniprot
Match: D8LNQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 501 bits (1291), Expect = 2.950e-175
Identity = 253/273 (92.67%), Postives = 260/273 (95.24%), Query Frame = 1 
Query:    1 SGAEEHRGTLRDTNPGVGATTAQEGXXXXXXXXXXXXXXELPEKTKQSDAMHAMVSTPTWRYFLNLFELSRLLDLPADNLRAVLQPPCARKSTIEHELFISTFGISRGWHAGNPAWHLLGCGHVVALGEDACMELLSRPPQSFFWSAMKRREPNTGIPWTVGCEAETPLLLEAHRLTLDVERSLQCRNCKPNCPINVPRHSWEFMRCESEATEILGVDAELKINFECVNCHSIHRRVPLPAKGLGSKVQSWSMADEVVCGTFDSISSWLRIRA 819
            SGAEEHRGT RDTNP VGATTAQE XXXXXXXXXXXXXX LPEK K+SDAMHAMVSTPTW YFLNLFELSRLLDLPAD+LRAVLQPPCAR STIEHELF+STFGISRGWHAGNPAWHLLGCGHVVALGEDACMELLSRPPQ FFWSAMKRREPNTGIPWTVGCEAETPLLLEAHRLTLD+ERSLQCRNCKPNCPIN PRHSWEFMRCESEATEILGVDAELK+NFECVNCHSIH  VPLPAKGLG +VQSWSMADEVV GTFDSISSWLR+RA
Sbjct:  124 SGAEEHRGTPRDTNPAVGATTAQEXXXXXXXXXXXXXXXXLPEKKKRSDAMHAMVSTPTWGYFLNLFELSRLLDLPADDLRAVLQPPCARNSTIEHELFLSTFGISRGWHAGNPAWHLLGCGHVVALGEDACMELLSRPPQPFFWSAMKRREPNTGIPWTVGCEAETPLLLEAHRLTLDIERSLQCRNCKPNCPINGPRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLGYEVQSWSMADEVVRGTFDSISSWLRVRA 396
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BLAST of mRNA_Ecto-sp13_S_contig14392.3382.1 vs. uniprot
Match: A0A6H5K0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V0_9PHAE)

HSP 1 Score: 467 bits (1202), Expect = 2.090e-162
Identity = 237/302 (78.48%), Postives = 250/302 (82.78%), Query Frame = 1 
Query:    1 SGAEEHRGTLRDTNPGVGATTAQEGXXXXXXXXXXXXXXELPEKTKQ------SDAMHAMVSTPTWRYFLNLFELSRLLDLPADNLRAVLQPPCARKSTIEHELFISTFGISRGWHAGNPAWHLLGCGHVVALGEDACMELLSRPPQSFFWSAMKRREPNTGIPWTVGCEAETPLLLEAHRLTLDVERSLQCRNCKPNCPINVPRHSWEFMRCESEATEILGVDAELKINFECVNCHSIHRRVPLPAKGLGSKVQSWSMADEVVCGTFDSISSWLRIRAETPRKANSMACRSSDASPHETAA 888
            SGAEEH GT R   PG+     QE               ELPE TK+      SDAMHAMVSTPTW YFLNLFELSRLLDLPAD+LRAVLQPPCARKS IEHELF+STFGISRG H G PAWHLLGCGH VALGEDACMELLSRPPQ+ F SAMKRREPN GIPWTVGCEAETPLLL AHRL+LDVERSLQCRNCKPNCPIN PRHSWEFMR ESEATEILGVDAEL++NFECVNCHSIH  VP PAKG+GS+VQSWSMADEVV GTFDSISSWLR+RA +PRKANS+A RS DASPHE AA
Sbjct:   67 SGAEEHVGTER-YQPGLTPDEQQE--------------EELPENTKRRVAWVRSDAMHAMVSTPTWGYFLNLFELSRLLDLPADDLRAVLQPPCARKSAIEHELFLSTFGISRGCHDGKPAWHLLGCGHAVALGEDACMELLSRPPQAVFRSAMKRREPNAGIPWTVGCEAETPLLLNAHRLSLDVERSLQCRNCKPNCPINGPRHSWEFMRGESEATEILGVDAELRVNFECVNCHSIHLGVPFPAKGVGSEVQSWSMADEVVRGTFDSISSWLRVRAVSPRKANSIASRSRDASPHEAAA 353
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BLAST of mRNA_Ecto-sp13_S_contig14392.3382.1 vs. uniprot
Match: A0A6H5KB44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB44_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 3.810e-50
Identity = 89/127 (70.08%), Postives = 94/127 (74.02%), Query Frame = 1 
Query:    1 SGAEEHRGTLRDTNPGVGATTAQEGXXXXXXXXXXXXXXELPEKTKQSDAMHAMVSTPTWRYFLNLFELSRLLDLPADNLRAVLQPPCARKSTIEHELFISTFGISRGWHAGNPAWHLLGCGHVVAL 381
            SGAEEH GTLRDTNP VGATTAQEG                     +SDAMHAMVSTPTW YFLNLFELSR+LDLPAD+LRA+LQPPCARKSTIEHELF+STFGI  G H G PAWHLLGCG    L
Sbjct:   66 SGAEEHVGTLRDTNPAVGATTAQEGGGSSEMHITMVAWV-------RSDAMHAMVSTPTWGYFLNLFELSRVLDLPADDLRAMLQPPCARKSTIEHELFLSTFGIIPGCHDGKPAWHLLGCGRCQQL 185
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BLAST of mRNA_Ecto-sp13_S_contig14392.3382.1 vs. uniprot
Match: D7FPI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 9.700e-7
Identity = 33/60 (55.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    1 SGAEEHRGTLRDTNPGVGATTAQEGXXXXXXXXXXXXXXELPEKTKQSDAMHAMVSTPTW 180
            SGAEEHRGT RDTNP VGATTAQEG              ELPEKTK+S         PT+
Sbjct:  124 SGAEEHRGTPRDTNPAVGATTAQEGGGSSTVTPDEQEEQELPEKTKRSGVSCGHGRRPTY 183
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14392.3382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNQ4_ECTSI2.950e-17592.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0V0_9PHAE2.090e-16278.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB44_9PHAE3.810e-5070.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI0_ECTSI9.700e-755.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14392contigEcto-sp13_S_contig14392:2935..4426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size888
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006230.3
Cds size888
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462768.4833298-CDS-Ecto-sp13_S_contig14392:2934..33881681462768.4833298-CDS-Ecto-sp13_S_contig14392:2934..3388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14392 2935..3388 -
1681462768.4933755-CDS-Ecto-sp13_S_contig14392:3674..39651681462768.4933755-CDS-Ecto-sp13_S_contig14392:3674..3965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14392 3675..3965 -
1681462768.5050402-CDS-Ecto-sp13_S_contig14392:4283..44261681462768.5050402-CDS-Ecto-sp13_S_contig14392:4283..4426Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14392 4284..4426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14392.3382.1prot_Ecto-sp13_S_contig14392.3382.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14392 2935..4426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14392.3382.1

>prot_Ecto-sp13_S_contig14392.3382.1 ID=prot_Ecto-sp13_S_contig14392.3382.1|Name=mRNA_Ecto-sp13_S_contig14392.3382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=296bp
SGAEEHRGTLRDTNPGVGATTAQEGGGSSTVTLDEQEEEELPEKTKQSDA
MHAMVSTPTWRYFLNLFELSRLLDLPADNLRAVLQPPCARKSTIEHELFI
STFGISRGWHAGNPAWHLLGCGHVVALGEDACMELLSRPPQSFFWSAMKR
REPNTGIPWTVGCEAETPLLLEAHRLTLDVERSLQCRNCKPNCPINVPRH
SWEFMRCESEATEILGVDAELKINFECVNCHSIHRRVPLPAKGLGSKVQS
WSMADEVVCGTFDSISSWLRIRAETPRKANSMACRSSDASPHETAA
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mRNA from alignment at Ecto-sp13_S_contig14392:2935..4426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14392.3382.1 ID=mRNA_Ecto-sp13_S_contig14392.3382.1|Name=mRNA_Ecto-sp13_S_contig14392.3382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14392:2935..4426- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGTGCTGAAGAACACCGTGGGACCCTTAGAGATACCAACCCGGGCGT
TGGCGCGACGACAGCACAGGAGGGGGGGGGGAGTAGTACAGTTACGCTAG
ACGAACAAGAGGAAGAAGAGCTTCCGGAGAAAACGAAACAGAGGTATGCT
TTACGTTCAATTCTATTATGGTGCCTCTGTGGGGTTACCAGGCGGCGGTC
GTGGTGCTCTCATGACTACAAGACACTGTTGTGTAGGCGAGATGCGCACT
ACCATGTACTCGTCACGTGCCTTGATGTTCTGCTGTTGACTACTCCTTTG
CGACTACCATTGTATTGCCGAGCACTATGCTGAGGGTGTTGGCTCATGCC
ACCTGAATATCCCTCATGCGTCGTAGCGACGCTGTCTATTTCCGTTGCTC
ATGTTGCCGCGGTCATTTATTCTCTTGTTTCTGCTTCACGCAGGGTGGCG
TGGGTTCGGAGCGACGCGATGCACGCGATGGTGTCCACTCCAACATGGAG
GTACTTCTTGAACTTGTTCGAGTTGTCAAGACTCCTAGATCTGCCAGCGG
ATAATCTTCGCGCCGTGCTGCAGCCTCCATGTGCCCGAAAGTCTACGATC
GAGCATGAACTGTTCATCTCGACGTTCGGCATTTCCCGGGGGTGGCATGC
CGGGAACCCCGCCTGGCATTTGCTTGGATGTGGGCACGTCGTCGCGCTAG
GGGAAGATGCGTGCATGGAACTCCTGAGCAGGCCACCCCAGTCCTTTTTT
TGGTGAGTTGGTATTCCGTCAGTGTCGATGGATGCATTTTACAAGTCCTA
GTCAGCCCTCTATAGGGTACTAAACGCTGTGCTTCCACGTACTGCTTGTA
ATGCTGCTGTGTTGGTGATGCCAAGTCGGCTTACTATCCCACCCCATCAA
TTCAACCACCCACCCACCACACCCACTCCACACCAATTCCTGTATGCCTT
TCCTCAATCTATGTTCCGGTGCCCCGCTAGTAGTACCCGACTTGCCACTC
GGATTTGACTCTTGTTTATCTTGTGATTTTGCCTGCAGGAGTGCGATGAA
GCGGAGAGAACCAAACACCGGTATTCCCTGGACTGTCGGCTGCGAGGCAG
AGACACCTCTACTCCTAGAAGCACATCGCCTTACTTTAGATGTAGAGAGG
TCCCTGCAGTGTAGAAACTGCAAACCAAACTGCCCGATCAATGTGCCACG
TCATAGTTGGGAGTTCATGCGGTGCGAGTCCGAGGCGACGGAAATCCTCG
GGGTAGACGCCGAGCTCAAAATCAACTTTGAGTGCGTCAATTGCCACTCG
ATACACCGTCGGGTGCCTTTGCCTGCGAAGGGGTTGGGTTCTAAAGTCCA
ATCGTGGTCGATGGCGGATGAGGTTGTGTGTGGGACTTTTGATAGTATCT
CCAGTTGGCTTCGGATACGTGCAGAAACCCCCAGAAAGGCGAACAGTATG
GCGTGTCGTAGTAGCGATGCTTCGCCACACGAAACAGCTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14392:2935..4426-

>mRNA_Ecto-sp13_S_contig14392.3382.1 ID=mRNA_Ecto-sp13_S_contig14392.3382.1|Name=mRNA_Ecto-sp13_S_contig14392.3382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14392:2935..4426- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGTGCTGAAGAACACCGTGGGACCCTTAGAGATACCAACCCGGGCGT
TGGCGCGACGACAGCACAGGAGGGGGGGGGGAGTAGTACAGTTACGCTAG
ACGAACAAGAGGAAGAAGAGCTTCCGGAGAAAACGAAACAGAGCGACGCG
ATGCACGCGATGGTGTCCACTCCAACATGGAGGTACTTCTTGAACTTGTT
CGAGTTGTCAAGACTCCTAGATCTGCCAGCGGATAATCTTCGCGCCGTGC
TGCAGCCTCCATGTGCCCGAAAGTCTACGATCGAGCATGAACTGTTCATC
TCGACGTTCGGCATTTCCCGGGGGTGGCATGCCGGGAACCCCGCCTGGCA
TTTGCTTGGATGTGGGCACGTCGTCGCGCTAGGGGAAGATGCGTGCATGG
AACTCCTGAGCAGGCCACCCCAGTCCTTTTTTTGGAGTGCGATGAAGCGG
AGAGAACCAAACACCGGTATTCCCTGGACTGTCGGCTGCGAGGCAGAGAC
ACCTCTACTCCTAGAAGCACATCGCCTTACTTTAGATGTAGAGAGGTCCC
TGCAGTGTAGAAACTGCAAACCAAACTGCCCGATCAATGTGCCACGTCAT
AGTTGGGAGTTCATGCGGTGCGAGTCCGAGGCGACGGAAATCCTCGGGGT
AGACGCCGAGCTCAAAATCAACTTTGAGTGCGTCAATTGCCACTCGATAC
ACCGTCGGGTGCCTTTGCCTGCGAAGGGGTTGGGTTCTAAAGTCCAATCG
TGGTCGATGGCGGATGAGGTTGTGTGTGGGACTTTTGATAGTATCTCCAG
TTGGCTTCGGATACGTGCAGAAACCCCCAGAAAGGCGAACAGTATGGCGT
GTCGTAGTAGCGATGCTTCGCCACACGAAACAGCTGCG
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