mRNA_Ecto-sp13_S_contig10340.338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10340.338.1
Unique NamemRNA_Ecto-sp13_S_contig10340.338.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE)

HSP 1 Score: 489 bits (1260), Expect = 4.470e-169
Identity = 327/376 (86.97%), Postives = 332/376 (88.30%), Query Frame = 1
Query:    1 MAGSSSECPVQHAPKESSSTPAASVAAGNELTASTEPEQASGRRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GCPVQHGSTTTSTAAPAEGLGRVWGYVTGSIGGVGGXXXXXXXXXXXPASSELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPA-PKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1122
            MAG SS CPVQHAPKESS TPAA+ AAGNE TASTE EQASGRRWSSRVAAWLPFRQG XXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXXXXXXX GCPV+HGS  TSTAAPAEGLGRVWGY+TGSIGG GG           PA+ ELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERA     XXXXXXXXXXXXXXX +PA PKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD
Sbjct:    1 MAGRSSGCPVQHAPKESSPTPAATAAAGNESTASTESEQASGRRWSSRVAAWLPFRQGGXXXXXXXXXXXXXXXXXXXXXXVQGSAAWRGTKEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCPVEHGSAATSTAAPAEGLGRVWGYLTGSIGGAGGSGEVSSATAPAPAAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 376          
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 1.110e-142
Identity = 324/379 (85.49%), Postives = 327/379 (86.28%), Query Frame = 1
Query:  103 TEPEQASGRRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GCPVQHGSTTTSTAAPAEGLGRVWGYVTGSIGGVGGXXXXXXXXXXXPASSELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXX--------------------------------------IPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1122
            TEPEQ SG RWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GCPVQHGS  TSTAAPA GLGRVWGY+TGSIGG   XXXXXXXXXXX  + ELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXX                                      +PAPKL RFTGRPQDTSPKAWVKSTL GYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD
Sbjct:   21 TEPEQGSGGRWSSRVAAWLPFRQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCPVQHGSAATSTAAPAGGLGRVWGYLTGSIGGAXXXXXXXXXXXXXXEAPELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 399          
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.130e-59
Identity = 109/200 (54.50%), Postives = 128/200 (64.00%), Query Frame = 1
Query:  523 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYD 1122
            + +  ++E V G      Q VPLST+RQ S+IPK E  P HQP+  A  WVYPSEQQY+NA+KRKG++A   D+P  LAIHNAVNE+GW  V+EWE                          PKL  F GRP D SPKAW K+ +LGY+PPFDRHDWVV+ A G E RYVIDFYAGK  P    PVA+HLDVRPALDS D
Sbjct:    1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD--------------------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSAD 176          
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA)

HSP 1 Score: 203 bits (516), Expect = 2.270e-58
Identity = 110/204 (53.92%), Postives = 126/204 (61.76%), Query Frame = 1
Query:  508 PASSELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKA-WVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1116
            P SS   N  NNE  Y Q     Q VPLSTSR+ SSIPK++F P HQP+   +KWVYPSEQQY+NA+K KG+     D+   LAIHNAVNE+GW  V EWE                          PKL RF GRPQD SPKA W+   + GY  PFDRHDWVV+RADG+E RYVIDFY G+       PV+MHLDVRPALDS
Sbjct:   73 PPSSSPVNPLNNERQYSQVPQPSQAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTP-------------------PKLKRFMGRPQDLSPKAAWL--WMCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDS 255          
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.450e-56
Identity = 102/204 (50.00%), Postives = 127/204 (62.25%), Query Frame = 1
Query:  511 ASSELYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAG--KAPPGSSMPVAMHLDVRPALDS 1116
            +++ LYN   N++V+ Q   A Q+  LS  R  S+IPK +F P+HQP K  EKWVYPSEQQYYNA+KRKGY  S AD+P+ L IHN VNEKGW  V+EWE                        P PKL +F G+P   SPKA + + ++GY  PFDRHDW+V+R DG E RYVIDFY G     P    PV+++LDVRPA DS
Sbjct:   57 SNNPLYNTNANDFVFDQSRTADQKANLSVKRATSTIPKGDFTPEHQP-KATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSG-------------------FPNPKLKKFMGKPTQLSPKARLLN-MIGYSKPFDRHDWIVERPDGQEVRYVIDFYGGARNINPSKPQPVSIYLDVRPAADS 239          
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A7S4DXX3_9EUKA (Holocytochrome c-type synthase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXX3_9EUKA)

HSP 1 Score: 174 bits (441), Expect = 9.230e-49
Identity = 95/197 (48.22%), Postives = 120/197 (60.91%), Query Frame = 1
Query:  529 NARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSY 1119
            N  N      Q  + GQ +PL T R  S+IPK +F P HQ + +A  W YPS QQ+YNA+KRKGY+    DM S +AIHN VNEK W+ V EWE+ H +                   P P+L +F+GR  D S KA + +T +GYRPPFDRHDWVV R  G + RYVIDFY G  P  + MP+++HLDVRPA DS+
Sbjct:   16 NPSNQMPSLSQMPSRGQRMPLPTHRVESTIPKGDFKPSHQLEGKAN-WTYPSPQQFYNAMKRKGYQPKEEDMQSVVAIHNTVNEKTWKKVMEWEKMHLDKC-----------------PNPRLEKFSGRANDQSLKARI-NTWMGYRPPFDRHDWVVDRC-GKKVRYVIDFYTG--PSMTGMPLSIHLDVRPAADSF 190          
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A7S0WSL6_9CHLO (Holocytochrome c-type synthase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WSL6_9CHLO)

HSP 1 Score: 172 bits (437), Expect = 1.340e-47
Identity = 99/196 (50.51%), Postives = 119/196 (60.71%), Query Frame = 1
Query:  535 RNNEYVYGQEVAAG--QEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDS 1116
            +NN +   Q  AA   Q +PLS  R  S+IPK EF P HQ  K    WVYPSEQ +YNA+KRKG++ +  DMPS +AIHNAVNE+ W  +  WE  HA A                  P+P L +F GRP+D SPKA + +  LGY+ PFDRHDW V R  G E RYVIDFY     PG   P+AMHLDVRPALD+
Sbjct:   43 KNNMFFPKQIQAASSDQRIPLSIERVASTIPKDEFTPSHQ-SKTDPVWVYPSEQMFYNAMKRKGWQPNEVDMPSVVAIHNAVNERCWHEILTWEHLHASAC-----------------PSPTLNKFEGRPKDYSPKARLLN-WLGYKLPFDRHDWYVNRC-GEEVRYVIDFYNAAPQPG--QPIAMHLDVRPALDT 216          
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A2R5GNK2_9STRA (Holocytochrome c-type synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNK2_9STRA)

HSP 1 Score: 170 bits (430), Expect = 5.760e-46
Identity = 93/188 (49.47%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  559 QEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQ-KEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSY 1119
            Q+   GQ  PLST+R  S IPK EF+PDHQ   +E+  W+YPSEQQ++NA+KRKG+K    DM   LAIHN VN+K W  V ++E  H E                     PKL+RF G+P++ SPKA V+S   GY  PFDRHDW+V R  GTE RYVIDFY G         V+M+LD RPALDS+
Sbjct:   78 QKAWPGQRFPLSTNRVESVIPKGEFSPDHQKHSRESSSWMYPSEQQFFNAMKRKGWKPREEDMRIVLAIHNHVNDKAWSEVSKYESMHPECD------------------CPKLVRFMGKPKNLSPKATVRS-WFGYAKPFDRHDWIVDRC-GTEVRYVIDFYQGAQTSNPGEVVSMYLDARPALDSW 245          
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A1E1GHU4_9CRYP (Holocytochrome c-type synthase n=1 Tax=Roombia sp. NY0200 TaxID=1263497 RepID=A0A1E1GHU4_9CRYP)

HSP 1 Score: 168 bits (426), Expect = 1.650e-45
Identity = 91/199 (45.73%), Postives = 112/199 (56.28%), Query Frame = 1
Query:  526 YNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSS--MPVAMHLDVRPALDS 1116
            +N  NN     Q+ A  Q  PL   R  SSIP            E  KWVYPSEQ ++NA+K+KG+  S  DMP  +AIHN  NEK W  +  WE+    A                 +P PKL+RF GRP D SPKAW  S ++GY  PFDRHDW+V+R +  + RYVIDFY G   P +S   P+AMHLDVRPA+DS
Sbjct:   84 FNPNNNMSAPNQQPAPDQRFPLPRERVVSSIPNGSVAD------EEAKWVYPSEQMFFNAMKKKGWSPSEKDMPLVVAIHNTTNEKAWNEILRWEQF---ALTGSKGAPTDAASSTPPVPPPKLVRFQGRPNDLSPKAWFLS-MIGYSRPFDRHDWLVERTNKEQVRYVIDFYEGGTVPSTSRRQPIAMHLDVRPAVDS 272          
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Match: A0A7S0WA24_9CRYP (Holocytochrome c-type synthase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WA24_9CRYP)

HSP 1 Score: 165 bits (417), Expect = 3.130e-45
Identity = 96/197 (48.73%), Postives = 120/197 (60.91%), Query Frame = 1
Query:  535 RNNEYVYGQEVAAG--QEVPLSTSRQRSSIPKAEFNPDHQPQK-EAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWER-AHAEAAXXXXXXXXXXXXXXXXIPAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALD 1113
            RNN    G+    G  Q  PLST+R  SSIPK +F P HQ +  + E+WVYPSEQ ++NA++RKG+     DM S +A+HNAVNE+ W  V  WER  H E                   P P+L+RF GRP+D SP+A + S LLGY+ PFDRHDW V R  G + RYVIDFY GK PP    PV+  ++VRPALD
Sbjct:    4 RNNMRKGGESQYPGLNQSRPLSTARVESSIPKDDFTPAHQAENSQKERWVYPSEQMFFNAMQRKGWNPKEDDMSSVVALHNAVNEQTWNEVLRWERDLHPEC------------------PQPRLVRFYGRPKDFSPRARIFS-LLGYKLPFDRHDWTVDRC-GKQVRYVIDFYHGK-PPADGRPVSFFIEVRPALD 179          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10340.338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L219_9PHAE4.470e-16986.97Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
D8LGP6_ECTSI1.110e-14285.49Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
A0A835ZPE3_9STRA1.130e-5954.50Holocytochrome c-type synthase n=1 Tax=Tribonema m... [more]
W7TBT6_9STRA2.270e-5853.92Holocytochrome c-type synthase n=2 Tax=Monodopsida... [more]
A0A7S3HNG9_9STRA2.450e-5650.00Holocytochrome c-type synthase n=1 Tax=Spumella el... [more]
A0A7S4DXX3_9EUKA9.230e-4948.22Holocytochrome c-type synthase n=1 Tax=Lotharella ... [more]
A0A7S0WSL6_9CHLO1.340e-4750.51Holocytochrome c-type synthase n=1 Tax=Pyramimonas... [more]
A0A2R5GNK2_9STRA5.760e-4649.47Holocytochrome c-type synthase n=1 Tax=Hondaea fer... [more]
A0A1E1GHU4_9CRYP1.650e-4545.73Holocytochrome c-type synthase n=1 Tax=Roombia sp.... [more]
A0A7S0WA24_9CRYP3.130e-4548.73Holocytochrome c-type synthase n=1 Tax=Hemiselmis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10340contigEcto-sp13_S_contig10340:704..3816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score426.4
Seed ortholog evalue1.6e-116
Seed eggNOG ortholog2880.D8LGP6
Preferred nameHCCS
Model size1287
KEGG rclassRC00727,RC02130
KEGG koko:K01764
KEGG ReactionR02480
KEGG Pathwayko00860,map00860
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004408,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0016043,GO:0016829,GO:0016846,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564
Exons4
EggNOG free text desc.holocytochrome-c synthase activity
EggNOG OGsKOG3996@1,KOG3996@2759
Ec32 ortholog descriptionCytochrome c/c1 haem-lyase
Ec32 orthologEc-10_003030.1
EC4.4.1.17
Cds size1287
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462524.6517644-CDS-Ecto-sp13_S_contig10340:703..8681681462524.6517644-CDS-Ecto-sp13_S_contig10340:703..868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10340 704..868 -
1681462524.667594-CDS-Ecto-sp13_S_contig10340:1456..15951681462524.667594-CDS-Ecto-sp13_S_contig10340:1456..1595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10340 1457..1595 -
1681462524.6789117-CDS-Ecto-sp13_S_contig10340:2004..23331681462524.6789117-CDS-Ecto-sp13_S_contig10340:2004..2333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10340 2005..2333 -
1681462524.6925066-CDS-Ecto-sp13_S_contig10340:3162..38161681462524.6925066-CDS-Ecto-sp13_S_contig10340:3162..3816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10340 3163..3816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10340.338.1prot_Ecto-sp13_S_contig10340.338.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10340 704..3816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10340.338.1

>prot_Ecto-sp13_S_contig10340.338.1 ID=prot_Ecto-sp13_S_contig10340.338.1|Name=mRNA_Ecto-sp13_S_contig10340.338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=429bp
MAGSSSECPVQHAPKESSSTPAASVAAGNELTASTEPEQASGRRWSSRVA
AWLPFRQGGGGGSDGSAAKGSGGAAAPAPSAIQGSAAPQGTKEEHGGGGG
GCPVNSSAEDGGDDAVPPSSSSGCPVQHGSTTTSTAAPAEGLGRVWGYVT
GSIGGVGGGGDGSSATAPAPASSELYNARNNEYVYGQEVAAGQEVPLSTS
RQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPS
TLAIHNAVNEKGWEMVQEWERAHAEAAATTTPAAEGRGGGGGGIPAPKLL
RFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAG
KAPPGSSMPVAMHLDVRPALDSYDHGGPPLPYRGAGRFQERTGAAAVGSG
CAAAAALRGAVTRRGTAVLDAAAAPAPAA
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mRNA from alignment at Ecto-sp13_S_contig10340:704..3816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10340.338.1 ID=mRNA_Ecto-sp13_S_contig10340.338.1|Name=mRNA_Ecto-sp13_S_contig10340.338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3113bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10340:704..3816- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGGCAGTAGTAGCGAGTGCCCGGTGCAGCACGCGCCGAAAGAATC CTCGTCGACACCAGCAGCATCAGTAGCGGCCGGAAATGAGTTGACTGCTT CGACGGAGCCAGAGCAAGCAAGCGGACGACGCTGGTCATCAAGGGTTGCC GCCTGGCTTCCCTTCCGCCAGGGCGGCGGCGGTGGTAGTGACGGCAGCGC TGCCAAGGGTAGCGGTGGAGCTGCAGCACCAGCACCATCAGCCATTCAAG GTAGCGCGGCTCCGCAGGGGACTAAGGAGGAACACGGCGGCGGCGGTGGG GGGTGTCCGGTGAACAGCTCTGCGGAGGACGGAGGAGACGATGCCGTCCC GCCGTCGTCTTCGTCAGGCTGTCCCGTCCAGCATGGCTCGACAACAACGT CAACAGCAGCCCCGGCAGAAGGGTTGGGCAGAGTGTGGGGATACGTAACC GGGAGCATCGGTGGAGTTGGAGGTGGTGGCGACGGTTCTTCGGCCACGGC ACCGGCGCCAGCATCATCGGAGTTGTACAATGCGCGGAATAACGAGTACG TCTACGGGCAGGAGGTGGCCGCGGGGCAGGAGGTTCCCCTGTCCACGTCA CGGCAACGCTCTTCGATCCCGAAGGCAGAGTTCAACCCGGACCATCAGCC CCAGGTGCGTTGGTGCGAGGGAAACGGGAGAGTTTGTATCTATCCCACCC GGTATACAACTAACAGAGTCATCCCGCAGGGCAGCATAGAGTCAGCTTCG ATCGAGCACATATTCTCCATGTCTGCTGTGCGCGAAGGGCGCAACTTCAG GAAGACCAAGCGGTCGGTTCTACACGAGTTGCCTGCGTTTCCAGCTCTTG GCACGACCACTTCAATGCGCTGGAGGACGGCCTTTCCAGCATCGCTGGCG CGAGCCTGGACGGATTCGATACCGATGCCGTTCAGGTCACGGCACAGCGC TCGGTACCGAAGTCGTGGGATCCCTTCGTCGATTTCTCCCCGCGCAACAG CATACTCCGCAGTATATTGTAACGCTCTGATTTTCGAAGGACCACGTACA GCTTGGAGCACTCACAGCAGGATTGGCCGTATCAGGAATGGTGGCTCAAA GTGTGGAAAAGAAAAGGCTGAGAATCTTCCCTGGTGTGCGTCTTGTCTGC GCGACGTATGTATGCATACGAGGCTGGAATCAGTATGCCGGAATGCGCTG GCGTAGCGTTTTAGCCTGCTTCCCGTGTGCTTCTGTTTCCCTTGCTCCTT TTCTGTTACTCTACATATTTGTGCGGATTTGTTGGAGCGTTGGGAGTATT CTCCGTGAGTGAGGGCTTTCAACCCTCCATCGAATCCTAATCCTGTTAAC TGGTGCGGGAAATTCTCTGTCGTGCCTAACCCGCTCTTGCTTCGCGCATT TGCTTCGAGGTAGCTGTTCCAAGTATTCTGAGCTCCCTCTCCCCCCCCCC CTCCCTTCCTAACAAAACCCCACCACCGTACAGAAGGAGGCCGAGAAGTG GGTCTACCCGTCGGAGCAGCAGTACTACAACGCCATCAAGAGGAAGGGGT ACAAGGCCTCGGCGGCAGACATGCCGTCCACGCTGGCTATCCACAACGCC GTGAACGAAAAGGGATGGGAGATGGTTCAGGAGTGGGAGAGGGCTCACGC CGAGGCCGCCGCAACTACGACGCCCGCCGCGGAGGGAAGGGGGGGCGGGG GCGGCGGCATCCCAGCCCCCAAGTTGCTTCGCTTCACGGGGAGGCCGCAG GATACATCGCCCAAGGCTTGGGTCAAGTCGACCCTTCTCGGCTACCGTCC CCCGTTCGACAGGTAGACCACATGCTGTGTGCTGGCATCATGCTGTCGAC GGTGTGGGTGTCAGTTAACCTTGTTGTGGTAGAGGGGGGGGGCGTTGGGA GTGGGCAGCACTATTGCGATAATGTATTGAGAAAGCGGCGGCAGATATGG AGTAGACGATTGCAGACGAGGATTCCTGAGCACGGCTACCATCGCGCGGG CACTGGAACTGGACAGCTTGGCCGTTCGATAGCTGTCGACACCAGCCTCA AGTACGTGCTCAGAGCCACCTGGTGAAGTCTGCGCACAAATGGCAGGGAG CACGCACGTGACAGAATGGAACACGACACACTTTATGTTGCCATGACGCG CTTGTTTGTTTCGCTCCATCCCACCCCACTCAAATGTCTCGTTTCTCGTG CGCTTACCCCCCCTCCGGCAGACACGATTGGGTAGTGAAGAGGGCAGACG GCACTGAGGCACGGTACGTGATCGACTTCTACGCGGGGAAGGCTCCCCCT GGCTCCAGCATGCCGGTGGCGATGCACTTGGACGTGCGGCCCGCTCTCGA TTCCTACGATGTACGTCAGGCATTTTACTCACCAGCTATTCAAGGTCGTT GGTTCTTCTTGTTGTCTACTTTATCGTAAGTTGTGTCTGCCTTCGAAGGC GTGCCGTCACGGCGCGTGCATGTCGGTCACCGCAATCGGTGTCATCGGAC GGCCCAGTACGGCGGCGACGATGTGCCCAGACGTGGAGGCCGTTTGTTCG CTAGGATATCATCAACTACGCGGGGAGTAAGACCTCCTTCATCAATACGA GTTTCGAGACAACCACAAAGCGAAATAATTTACTGTAGCACCGATCGCAC GGTCCTTGTGATGCATGCATATGCCTTTTATGAGTTGCATACGAGAACTG CACGAGCTCTCCTGTGTATGCCCCCGACGGTGTTTCCGCTCTCAAGACAG ACGACTCTACCCCGCAATTCTGTTTTCTCTGTTTGGCAAGAGATTATCAC TGTTGCTTCCCTCCCCTTCTCTTCTTTTTGTTTAGCAAGCATAAATGAAT GACGGCTGATTCCCTCCCCAAAACGTGGATGGTGCCGTTTGTTGTCCGAA CTGGGACACATTTAAGGCGGTCGTGGACCGGACGCGGATGTTCTACAGCA CGGAGGTCCGCCCCTACCTTACCGGGGTGCTGGACGCTTTCAAGAACGAA CCGGGGCCGCCGCCGTCGGATCAGGATGCGCCGCCGCCGCCGCCCTCCGT GGCGCGGTGACACGGCGCGGGACTGCTGTGCTGGATGCTGCTGCTGCTCC TGCTCCTGCTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10340:704..3816-

>mRNA_Ecto-sp13_S_contig10340.338.1 ID=mRNA_Ecto-sp13_S_contig10340.338.1|Name=mRNA_Ecto-sp13_S_contig10340.338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10340:704..3816- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGGCAGTAGTAGCGAGTGCCCGGTGCAGCACGCGCCGAAAGAATC
CTCGTCGACACCAGCAGCATCAGTAGCGGCCGGAAATGAGTTGACTGCTT
CGACGGAGCCAGAGCAAGCAAGCGGACGACGCTGGTCATCAAGGGTTGCC
GCCTGGCTTCCCTTCCGCCAGGGCGGCGGCGGTGGTAGTGACGGCAGCGC
TGCCAAGGGTAGCGGTGGAGCTGCAGCACCAGCACCATCAGCCATTCAAG
GTAGCGCGGCTCCGCAGGGGACTAAGGAGGAACACGGCGGCGGCGGTGGG
GGGTGTCCGGTGAACAGCTCTGCGGAGGACGGAGGAGACGATGCCGTCCC
GCCGTCGTCTTCGTCAGGCTGTCCCGTCCAGCATGGCTCGACAACAACGT
CAACAGCAGCCCCGGCAGAAGGGTTGGGCAGAGTGTGGGGATACGTAACC
GGGAGCATCGGTGGAGTTGGAGGTGGTGGCGACGGTTCTTCGGCCACGGC
ACCGGCGCCAGCATCATCGGAGTTGTACAATGCGCGGAATAACGAGTACG
TCTACGGGCAGGAGGTGGCCGCGGGGCAGGAGGTTCCCCTGTCCACGTCA
CGGCAACGCTCTTCGATCCCGAAGGCAGAGTTCAACCCGGACCATCAGCC
CCAGAAGGAGGCCGAGAAGTGGGTCTACCCGTCGGAGCAGCAGTACTACA
ACGCCATCAAGAGGAAGGGGTACAAGGCCTCGGCGGCAGACATGCCGTCC
ACGCTGGCTATCCACAACGCCGTGAACGAAAAGGGATGGGAGATGGTTCA
GGAGTGGGAGAGGGCTCACGCCGAGGCCGCCGCAACTACGACGCCCGCCG
CGGAGGGAAGGGGGGGCGGGGGCGGCGGCATCCCAGCCCCCAAGTTGCTT
CGCTTCACGGGGAGGCCGCAGGATACATCGCCCAAGGCTTGGGTCAAGTC
GACCCTTCTCGGCTACCGTCCCCCGTTCGACAGACACGATTGGGTAGTGA
AGAGGGCAGACGGCACTGAGGCACGGTACGTGATCGACTTCTACGCGGGG
AAGGCTCCCCCTGGCTCCAGCATGCCGGTGGCGATGCACTTGGACGTGCG
GCCCGCTCTCGATTCCTACGATCACGGAGGTCCGCCCCTACCTTACCGGG
GTGCTGGACGCTTTCAAGAACGAACCGGGGCCGCCGCCGTCGGATCAGGA
TGCGCCGCCGCCGCCGCCCTCCGTGGCGCGGTGACACGGCGCGGGACTGC
TGTGCTGGATGCTGCTGCTGCTCCTGCTCCTGCTGCC
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