mRNA_Ecto-sp13_S_contig14372.3371.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14372.3371.1
Unique NamemRNA_Ecto-sp13_S_contig14372.3371.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14372.3371.1 vs. uniprot
Match: D8LLX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX4_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 2.650e-104
Identity = 179/205 (87.32%), Postives = 191/205 (93.17%), Query Frame = 1 
Query:    1 MSVSGARKDKPITTVVEEDGYLLWLSDDDIKSTAGTADQASVIEADSGASVPHSTASRPPSTAAAIVQSIKAMQQQLVDVSLNGVIPVASNASMARYRGAVEKFEASQKALTTVTMSLNAARRDALKASDEVIEAAREAFGEDPEAPSDSASGSAQMNPSSSLSQEKRSSPCSLSQELRQVNLRLARVEQQLALIDVPSGSNAGK 615
            MSVSGA KDK  TTVVEEDGYLLWLSDDDI STAGTADQASVIEA+SG SVPHSTASRPPST+ AIVQSIKAMQQQLVDVSLNG IPVAS+A MARYRGAVEKFEASQKALTTV +SLNAA+RDALKASD+VIEAAREAFGEDPEA SDSASGSAQMNPS+SLSQEKRSSPCSL+QE+RQ NLRLARVEQQLA+I+V SGSN  +
Sbjct:    1 MSVSGADKDKS-TTVVEEDGYLLWLSDDDINSTAGTADQASVIEAESGTSVPHSTASRPPSTSVAIVQSIKAMQQQLVDVSLNGAIPVASDAVMARYRGAVEKFEASQKALTTVAVSLNAAQRDALKASDDVIEAAREAFGEDPEASSDSASGSAQMNPSASLSQEKRSSPCSLTQEVRQANLRLARVEQQLAVINVCSGSNTDR 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14372.3371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLX4_ECTSI2.650e-10487.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14372contigEcto-sp13_S_contig14372:2436..4268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size615
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002020.1
Cds size615
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.5569441-CDS-Ecto-sp13_S_contig14372:2435..25381681462767.5569441-CDS-Ecto-sp13_S_contig14372:2435..2538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14372 2436..2538 +
1681462767.5673523-CDS-Ecto-sp13_S_contig14372:3756..42681681462767.5673523-CDS-Ecto-sp13_S_contig14372:3756..4268Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14372 3757..4268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14372.3371.1prot_Ecto-sp13_S_contig14372.3371.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14372 2436..4268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14372.3371.1

>prot_Ecto-sp13_S_contig14372.3371.1 ID=prot_Ecto-sp13_S_contig14372.3371.1|Name=mRNA_Ecto-sp13_S_contig14372.3371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
MSVSGARKDKPITTVVEEDGYLLWLSDDDIKSTAGTADQASVIEADSGAS
VPHSTASRPPSTAAAIVQSIKAMQQQLVDVSLNGVIPVASNASMARYRGA
VEKFEASQKALTTVTMSLNAARRDALKASDEVIEAAREAFGEDPEAPSDS
ASGSAQMNPSSSLSQEKRSSPCSLSQELRQVNLRLARVEQQLALIDVPSG
SNAGK
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mRNA from alignment at Ecto-sp13_S_contig14372:2436..4268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14372.3371.1 ID=mRNA_Ecto-sp13_S_contig14372.3371.1|Name=mRNA_Ecto-sp13_S_contig14372.3371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1833bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14372:2436..4268+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGTATCGGGAGCAAGGAAAGACAAGCCCATTACCACCGTCGTGGA
AGAAGATGGGTACCTCCTATGGCTCTCGGACGACGATATAAAGTCTACGG
CAGGTGAAATCCAGGCGATCTGTGTACCCACATGACTGAGACTTTTTTAA
TTTCTGCGTCATCGGACACGTTTATGAGCATTTGCCTCTATAGAAGCTGG
GCCAGCCAAGAAGGTCACTTTTGTTCTTTGGCGTCTCACGCTGCCGTTTT
AACCAGTGTAGGCTTGAAAATTGGCAGCTGCTCGTACAAGACAATGGGCG
AACCGCAAGTACCAGAATTTTTCGAATCTGAGTTGATTTAGGTATAACAC
GATCAGTTGACTGCGTAATACCCAATACCTCTGGTGCTGAACTCAGTATT
AAAGAAAGTTTTTCAGATGAATCTATAATTTGGTGTGCACGTGCCTGAGA
GCAGTGAGAGAGCGTAGATGTTAGTTACAGGGCTCAAATCATCTTCCATC
ACAAGTTATGGCCTCGTAAAGATTCATATACAAGAAGCAAGATAGCTGAG
GGAATATGAGGATATCGCGATTTGCACCGCGATTTTTACGAGTTGGAATC
TGAAGTTGTGCATTGTGATGGGTATTAGTACAACCAAGACCTTGACTGGA
AGCACCCTCTTTTTTTTATTTTTTGTAGTCCTCCTGTACACAAAAAAAGG
ATCACCATTTGTTCTTAAATAGGGCTACCTCGTGAATAATAAACAAAAAA
GAAGGATGGTTCCAGTCAAGGTCTTGGTTGTACTAGTACGGACCACATAT
ATATCAAAATTTCAGGTTCTAATTCGTAGAAATCGTGGTGTTAATCGTTT
TCAACCATTTTGCATGCAACCTGGCTGGCCCAGCTTGCTTGTACTTGTCT
CAATCCGTGATGCTTTCTTTCACAAGAATGCACAGACACACGCAAGTTTA
CAGCAGTTGTAGCACGCTGCCAAGCTGAGTGTCTCTCGCTCATTACGGGC
GGCTCGTTTGGAAGCGAGCCAAATACTCGTTCATTCTGTCTGCCTGCGTT
AACTTCGGGCGCATTTTACCGGCGGTGATTCTTGGCTGCAACAATTGTGC
AGCTCCTCCTACCATCGTCGCGTACACCAGCAGGTAAAAATGGTTCGTTC
TTCGCGTTCAGCAGTTAAGTTACGAACCCGCCGAGCGCATTGCGCGCCCG
CTCTCTTATCTGACCAAAGTATCCCGGCTTCAACAGCAGTATATACTTTA
TCCATCGCACCTCAGATTTTGTGTCATTGATCAACACAATGCCGTCGTCT
CCTGCTGGTGAATATTCACAGGCACCGCAGACCAGGCATCCGTGATCGAG
GCCGACTCGGGCGCATCTGTGCCGCACTCGACTGCATCGAGGCCGCCCAG
TACTGCCGCAGCCATCGTGCAGAGCATCAAGGCAATGCAACAGCAGTTGG
TGGACGTATCCCTGAACGGTGTCATTCCAGTAGCCTCCAATGCCTCGATG
GCAAGGTACAGAGGGGCTGTAGAAAAATTCGAGGCTTCGCAGAAAGCGTT
GACGACCGTTACGATGAGCCTGAACGCTGCGCGGCGGGATGCCCTCAAAG
CATCCGACGAGGTCATAGAAGCGGCCAGGGAAGCGTTCGGTGAAGACCCT
GAAGCTCCTTCAGACTCCGCTTCCGGCAGCGCACAGATGAACCCGTCTTC
CTCTCTGTCGCAGGAGAAACGCTCATCGCCATGTTCATTGTCGCAAGAAT
TACGACAGGTCAATCTGAGGTTGGCAAGGGTTGAGCAGCAACTTGCTCTC
ATCGACGTCCCTTCCGGCAGCAACGCTGGTAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14372:2436..4268+

>mRNA_Ecto-sp13_S_contig14372.3371.1 ID=mRNA_Ecto-sp13_S_contig14372.3371.1|Name=mRNA_Ecto-sp13_S_contig14372.3371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14372:2436..4268+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGTATCGGGAGCAAGGAAAGACAAGCCCATTACCACCGTCGTGGA
AGAAGATGGGTACCTCCTATGGCTCTCGGACGACGATATAAAGTCTACGG
CAGGCACCGCAGACCAGGCATCCGTGATCGAGGCCGACTCGGGCGCATCT
GTGCCGCACTCGACTGCATCGAGGCCGCCCAGTACTGCCGCAGCCATCGT
GCAGAGCATCAAGGCAATGCAACAGCAGTTGGTGGACGTATCCCTGAACG
GTGTCATTCCAGTAGCCTCCAATGCCTCGATGGCAAGGTACAGAGGGGCT
GTAGAAAAATTCGAGGCTTCGCAGAAAGCGTTGACGACCGTTACGATGAG
CCTGAACGCTGCGCGGCGGGATGCCCTCAAAGCATCCGACGAGGTCATAG
AAGCGGCCAGGGAAGCGTTCGGTGAAGACCCTGAAGCTCCTTCAGACTCC
GCTTCCGGCAGCGCACAGATGAACCCGTCTTCCTCTCTGTCGCAGGAGAA
ACGCTCATCGCCATGTTCATTGTCGCAAGAATTACGACAGGTCAATCTGA
GGTTGGCAAGGGTTGAGCAGCAACTTGCTCTCATCGACGTCCCTTCCGGC
AGCAACGCTGGTAAG
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