mRNA_Ecto-sp13_S_contig14372.3370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14372.3370.1
Unique NamemRNA_Ecto-sp13_S_contig14372.3370.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14372.3370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14372contigEcto-sp13_S_contig14372:522..946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size425
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.5219936-UTR-Ecto-sp13_S_contig14372:521..5501681462767.5219936-UTR-Ecto-sp13_S_contig14372:521..550Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14372 522..550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.5305839-CDS-Ecto-sp13_S_contig14372:550..9461681462767.5305839-CDS-Ecto-sp13_S_contig14372:550..946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14372 551..946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14372.3370.1prot_Ecto-sp13_S_contig14372.3370.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14372 551..946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14372.3370.1

>prot_Ecto-sp13_S_contig14372.3370.1 ID=prot_Ecto-sp13_S_contig14372.3370.1|Name=mRNA_Ecto-sp13_S_contig14372.3370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MVVMRRYGPGGACMCCCCSCIEKCTCRVFCALLQYPTFPCHACVQNSLRI
DRVQQGVYPHISFRRRCASGVCPYQSSPTITSYNVQLRLRTDTAGAFPGR
AQRLGSRKSQRAETLHGILGNNENRARWCLSH
back to top

mRNA from alignment at Ecto-sp13_S_contig14372:522..946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14372.3370.1 ID=mRNA_Ecto-sp13_S_contig14372.3370.1|Name=mRNA_Ecto-sp13_S_contig14372.3370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=425bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14372:522..946+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATCGTTGTTGTTGTGGTCGCCTGAGGTGATGGTGGTGATGAGGAGGTAT
GGACCAGGGGGTGCATGCATGTGTTGTTGTTGTAGTTGCATTGAAAAGTG
CACATGCCGAGTGTTTTGCGCACTACTGCAGTACCCTACTTTTCCTTGTC
ATGCGTGTGTGCAGAATTCCTTGCGCATCGATCGGGTGCAACAGGGTGTG
TACCCACACATCAGTTTTCGGAGAAGATGTGCATCAGGTGTATGCCCATA
TCAATCCTCCCCCACCATCACCAGCTACAACGTGCAGTTGCGTCTACGGA
CGGACACAGCAGGAGCTTTTCCAGGCAGAGCACAACGGCTTGGTAGCAGG
AAGAGCCAACGAGCGGAAACGCTGCACGGGATCCTCGGCAATAACGAGAA
CAGAGCGAGGTGGTGTTTGTCTCAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14372:522..946+

>mRNA_Ecto-sp13_S_contig14372.3370.1 ID=mRNA_Ecto-sp13_S_contig14372.3370.1|Name=mRNA_Ecto-sp13_S_contig14372.3370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14372:522..946+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGTGATGAGGAGGTATGGACCAGGGGGTGCATGCATGTGTTGTTG
TTGTAGTTGCATTGAAAAGTGCACATGCCGAGTGTTTTGCGCACTACTGC
AGTACCCTACTTTTCCTTGTCATGCGTGTGTGCAGAATTCCTTGCGCATC
GATCGGGTGCAACAGGGTGTGTACCCACACATCAGTTTTCGGAGAAGATG
TGCATCAGGTGTATGCCCATATCAATCCTCCCCCACCATCACCAGCTACA
ACGTGCAGTTGCGTCTACGGACGGACACAGCAGGAGCTTTTCCAGGCAGA
GCACAACGGCTTGGTAGCAGGAAGAGCCAACGAGCGGAAACGCTGCACGG
GATCCTCGGCAATAACGAGAACAGAGCGAGGTGGTGTTTGTCTCAT
back to top