prot_Ecto-sp13_S_contig14371.3369.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14371.3369.1
Unique Nameprot_Ecto-sp13_S_contig14371.3369.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length101
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14371.3369.1 vs. uniprot
Match: A0A6H5L7M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.990e-43
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0 
Query:    1 GQQLQGLVPIDPDQQRRRIMEEVRLSTVILVCASFGVLAFVSGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEVCL 76
            GQQLQGLVPIDPDQQRRR+M EVRLSTVILVCA FGVLAFVSGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEVCL
Sbjct:  115 GQQLQGLVPIDPDQQRRRVMSEVRLSTVILVCAGFGVLAFVSGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEVCL 190
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BLAST of mRNA_Ecto-sp13_S_contig14371.3369.1 vs. uniprot
Match: D7FM29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM29_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.070e-36
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 0 
Query:    1 GQQLQGLVPIDPDQQRRRIMEEVRLSTVILVCASFGVLAFVSGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEV 74
            GQQLQGLVPIDPDQQ R IM EVRLSTVILVCA FGVLAF+SGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEV
Sbjct:  144 GQQLQGLVPIDPDQQGRHIMSEVRLSTVILVCAGFGVLAFISGSAENIWRKVKLAGIGAVHMLLSKDKKFKPEV 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14371.3369.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7M5_9PHAE2.990e-4396.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM29_ECTSI1.070e-3693.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 23..42
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..101
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..47
NoneNo IPR availableTMHMMTMhelixcoord: 23..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14371contigEcto-sp13_S_contig14371:2076..2378 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14371.3369.1mRNA_Ecto-sp13_S_contig14371.3369.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14371 2076..2378 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14371.3369.1 ID=prot_Ecto-sp13_S_contig14371.3369.1|Name=mRNA_Ecto-sp13_S_contig14371.3369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
GQQLQGLVPIDPDQQRRRIMEEVRLSTVILVCASFGVLAFVSGSAENIWR
KVKLAGIGAVHMLLSKDKKFKPEVCLSRIFERDTFGASLRVRETAVVCWY
E
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