prot_Ecto-sp13_S_contig14366.3365.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14366.3365.1
Unique Nameprot_Ecto-sp13_S_contig14366.3365.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length183
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14366.3365.1 vs. uniprot
Match: A0A6H5L7J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J2_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 4.510e-60
Identity = 127/175 (72.57%), Postives = 136/175 (77.71%), Query Frame = 0 
Query:    1 ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLESLDGKSVTHREVSLHNACRTLTLDMLRRNGRRRAPRSTPHRASQVVNARTR-SGPYLADASSREDEGYQGPQMARGRDSSSSSISSGSDHSQTMAAEVEDRPPGRRSGGRGRSS---EASAAIENKDEEGWEERLNTS 171
            ALWNIAPNLTVLDMRGNPLRAARTYRGAA+                          +LTLDMLRRNGRRRAPRSTPHRASQ VNARTR SGP LA+ASS EDEGYQGPQMARG DSSSSS+SSGSDHSQ +AAEVE+RPPGR +GGR RS    EASAAIENKDEEGWE+RL +S
Sbjct: 1422 ALWNIAPNLTVLDMRGNPLRAARTYRGAAI--------------------------SLTLDMLRRNGRRRAPRSTPHRASQAVNARTRRSGPCLANASSGEDEGYQGPQMARGSDSSSSSMSSGSDHSQKVAAEVENRPPGRGAGGR-RSXXXXEASAAIENKDEEGWEQRLYSS 1569
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BLAST of mRNA_Ecto-sp13_S_contig14366.3365.1 vs. uniprot
Match: D7FPT4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT4_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 5.110e-27
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 
Query:    1 ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLESLDGKSVTHREVSLHNACRT 57
            ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLE LDGKSVTHREVSLHNACRT
Sbjct: 1284 ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLEVLDGKSVTHREVSLHNACRT 1340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14366.3365.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7J2_9PHAE4.510e-6072.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPT4_ECTSI5.110e-2798.25Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 165..183
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..50
e-value: 8.4E-8
score: 33.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14366contigEcto-sp13_S_contig14366:21..1542 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14366.3365.1mRNA_Ecto-sp13_S_contig14366.3365.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14366 21..1544 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14366.3365.1 ID=prot_Ecto-sp13_S_contig14366.3365.1|Name=mRNA_Ecto-sp13_S_contig14366.3365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLESLDGKSVTHREVS
LHNACRTLTLDMLRRNGRRRAPRSTPHRASQVVNARTRSGPYLADASSRE
DEGYQGPQMARGRDSSSSSISSGSDHSQTMAAEVEDRPPGRRSGGRGRSS
EASAAIENKDEEGWEERLNTSAKEEEEDEEDEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf