mRNA_Ecto-sp13_S_contig14366.3365.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14366.3365.1
Unique NamemRNA_Ecto-sp13_S_contig14366.3365.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14366.3365.1 vs. uniprot
Match: A0A6H5L7J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J2_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 4.510e-60
Identity = 127/175 (72.57%), Postives = 136/175 (77.71%), Query Frame = 1 
Query:    1 ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLESLDGKSVTHREVSLHNACRTLTLDMLRRNGRRRAPRSTPHRASQVVNARTR-SGPYLADASSREDEGYQGPQMARGRDSSSSSISSGSDHSQTMAAEVEDRPPGRRSGGRGRSS---EASAAIENKDEEGWEERLNTS 513
            ALWNIAPNLTVLDMRGNPLRAARTYRGAA+                          +LTLDMLRRNGRRRAPRSTPHRASQ VNARTR SGP LA+ASS EDEGYQGPQMARG DSSSSS+SSGSDHSQ +AAEVE+RPPGR +GGR RS    EASAAIENKDEEGWE+RL +S
Sbjct: 1422 ALWNIAPNLTVLDMRGNPLRAARTYRGAAI--------------------------SLTLDMLRRNGRRRAPRSTPHRASQAVNARTRRSGPCLANASSGEDEGYQGPQMARGSDSSSSSMSSGSDHSQKVAAEVENRPPGRGAGGR-RSXXXXEASAAIENKDEEGWEQRLYSS 1569
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BLAST of mRNA_Ecto-sp13_S_contig14366.3365.1 vs. uniprot
Match: D7FPT4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT4_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 5.110e-27
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLESLDGKSVTHREVSLHNACRT 171
            ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLE LDGKSVTHREVSLHNACRT
Sbjct: 1284 ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLEVLDGKSVTHREVSLHNACRT 1340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14366.3365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7J2_9PHAE4.510e-6072.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPT4_ECTSI5.110e-2798.25Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14366contigEcto-sp13_S_contig14366:21..1544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score117.1
Seed ortholog evalue8.7e-24
Seed eggNOG ortholog2880.D7FPT4
Model size553
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Cds size549
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.0953405-CDS-Ecto-sp13_S_contig14366:20..1121681462767.0953405-CDS-Ecto-sp13_S_contig14366:20..112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14366 21..112 +
1681462767.106918-CDS-Ecto-sp13_S_contig14366:548..6261681462767.106918-CDS-Ecto-sp13_S_contig14366:548..626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14366 549..626 +
1681462767.116451-CDS-Ecto-sp13_S_contig14366:1163..15421681462767.116451-CDS-Ecto-sp13_S_contig14366:1163..1542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14366 1164..1542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14366.3365.1prot_Ecto-sp13_S_contig14366.3365.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14366 21..1542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14366.3365.1

>prot_Ecto-sp13_S_contig14366.3365.1 ID=prot_Ecto-sp13_S_contig14366.3365.1|Name=mRNA_Ecto-sp13_S_contig14366.3365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
ALWNIAPNLTVLDMRGNPLRAARTYRGAAVRGIPSLESLDGKSVTHREVS
LHNACRTLTLDMLRRNGRRRAPRSTPHRASQVVNARTRSGPYLADASSRE
DEGYQGPQMARGRDSSSSSISSGSDHSQTMAAEVEDRPPGRRSGGRGRSS
EASAAIENKDEEGWEERLNTSAKEEEEDEEDEE
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mRNA from alignment at Ecto-sp13_S_contig14366:21..1544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14366.3365.1 ID=mRNA_Ecto-sp13_S_contig14366.3365.1|Name=mRNA_Ecto-sp13_S_contig14366.3365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1524bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14366:21..1544+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTGTGGAACATTGCCCCGAACTTGACCGTCCTTGACATGCGGGGGAA
CCCGCTCAGGGCGGCCAGGACGTACCGCGGCGCGGCTGTCAGGTACGGTG
TACCACTGTGTTGGCACAATGGGCGGCTTGATTCGAACGTGCAGACCTGG
ACTACTTTGTTAAGGAAGGGACAGCTTGGAAAGTAATTGGGCATTGATTG
CGTGCTGGAGGGTGCTGGAAGATGTCATCCCACGTCGATGAATAACAAAT
GCTTTGGGTTCTTCAAGTGAAGTTTGCCCACTACCACCACCATCACGAAA
TGCTGCTCACAATCATCCACTTTTTACTTCTGGCATTCCCGAGCCCCATT
CCACCTTGCCTCCACCCTGCTTGCCCCCCCTTCTCCCAGAGCCCCAGGTG
GCTTTAACGAGAAGTTCAATGTGGGTAACACCACAATATGCGCAAGTTGG
CGCGCGCCATTTAAAATAAATATCATGTTTCGTGCTTCGCTGTTGCTGCC
GTTCCACGGGCCAAAATAACAAACCCAGGGGCATCCCTAGCCTGGAGTCG
CTGGATGGGAAGTCGGTCACGCACAGAGAGGTGTCCCTGCACAACGCCTG
CCGCACGTGAGAACATTTTCTGATAGTCTTCTTTCTCAGAACAGGGATCC
TGAATGATACTTTTAAGACCAAAGCAAAAATTCATAAGGTGTGCCGTTGT
TGTTTGTAGTCTTCGATGGGACTTCGTTTTGGTAGTCAGAGGGCTACAAC
ACGGGCCGCAGTAGCTCTTCTGGTCGGCGTCATTGCTAGGGCATTCCTCG
CGACTACGTTCAATCAAGCGAGCAAGCCTTCGGATCGCAGCAAGATGGTT
CTCGTTGCGAGAGCATCGTTCTAACGTTCTTTCATGCGATGTCGAAATCA
GCTGCCGTATCCAACGTAAACTAGCCCGTTCGAGAAAGAAGTACTAAAAA
CTTTTTCTAGCAGGAGAGCGTTTCTTCGAATCCCCCGATATACCAGTCTT
TAGATGTACATCCATTTCGCAACTTGGCGAGATGGACACGCCTTGTGTAG
GGCGATTTTACCTCACCGGCGATGAGTAGCACCTGCGTTATCTGACCCAG
TCCCGTCCCACTTGACGCGCGAACGCTGGCGGTACGCGCGCAGTCTAACG
CTGGACATGCTGCGGCGTAACGGCCGACGAAGAGCGCCTCGCTCGACGCC
GCACCGCGCCTCTCAGGTCGTCAACGCCAGGACCAGAAGCGGCCCGTACT
TGGCCGACGCATCATCTAGAGAGGATGAAGGATACCAAGGTCCGCAAATG
GCCCGGGGTAGAGACAGCAGTAGCAGTAGCATTAGTAGCGGTAGCGACCA
CAGCCAGACGATGGCGGCAGAAGTGGAGGACCGCCCTCCAGGGAGGAGGT
CGGGGGGTCGGGGAAGAAGCAGCGAGGCTTCGGCTGCGATAGAGAACAAG
GACGAGGAGGGTTGGGAGGAACGTCTAAATACGTCTGCGAAGGAGGAGGA
GGAAGACGAGGAAGACGAGGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14366:21..1544+

>mRNA_Ecto-sp13_S_contig14366.3365.1 ID=mRNA_Ecto-sp13_S_contig14366.3365.1|Name=mRNA_Ecto-sp13_S_contig14366.3365.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14366:21..1544+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTGTGGAACATTGCCCCGAACTTGACCGTCCTTGACATGCGGGGGAA
CCCGCTCAGGGCGGCCAGGACGTACCGCGGCGCGGCTGTCAGGGGCATCC
CTAGCCTGGAGTCGCTGGATGGGAAGTCGGTCACGCACAGAGAGGTGTCC
CTGCACAACGCCTGCCGCACTCTAACGCTGGACATGCTGCGGCGTAACGG
CCGACGAAGAGCGCCTCGCTCGACGCCGCACCGCGCCTCTCAGGTCGTCA
ACGCCAGGACCAGAAGCGGCCCGTACTTGGCCGACGCATCATCTAGAGAG
GATGAAGGATACCAAGGTCCGCAAATGGCCCGGGGTAGAGACAGCAGTAG
CAGTAGCATTAGTAGCGGTAGCGACCACAGCCAGACGATGGCGGCAGAAG
TGGAGGACCGCCCTCCAGGGAGGAGGTCGGGGGGTCGGGGAAGAAGCAGC
GAGGCTTCGGCTGCGATAGAGAACAAGGACGAGGAGGGTTGGGAGGAACG
TCTAAATACGTCTGCGAAGGAGGAGGAGGAAGACGAGGAAGACGAGGAG
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