mRNA_Ecto-sp13_S_contig14364.3364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14364.3364.1
Unique NamemRNA_Ecto-sp13_S_contig14364.3364.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: A0A6H5JCG2_9PHAE (Probable methylthioribulose-1-phosphate dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG2_9PHAE)

HSP 1 Score: 403 bits (1036), Expect = 7.680e-132
Identity = 208/221 (94.12%), Postives = 212/221 (95.93%), Query Frame = 1
Query:   52 VDVKAVAPSTVAAPTGPSLPAPNGPVSGSMSLAGVKVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVPQVLDPSSAGVEQAQASVAEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 714
            VDVKA APST  A  GP LPAPNGP SGS+SLAGVKVL+LDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQ AEKDAAVDGGTPGVPQVL+PSSAGVEQAQASVAEYVR+VMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLA YSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR
Sbjct:  665 VDVKAAAPSTAPATAGPLLPAPNGPASGSVSLAGVKVLVLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQ-AEKDAAVDGGTPGVPQVLEPSSAGVEQAQASVAEYVRFVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLATYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 884          
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: D7FXI6_ECTSI (Haloacid dehalogenase-like hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI6_ECTSI)

HSP 1 Score: 389 bits (1000), Expect = 1.450e-131
Identity = 201/221 (90.95%), Postives = 207/221 (93.67%), Query Frame = 1
Query:   52 VDVKAVAPSTVAAPTGPSLPAPNGPVSGSMSLAGVKVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVPQVLDPSSAGVEQAQASVAEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 714
            VDV A  PST +APTGP LPAPN    GS+SL GVKVL+LDIEGTTTPITFVKQTLFPYAQ+HLARHLKDQWE EDLQRLVRELKMQ AEKDAAVDGGTPGVPQVLD SSAGVEQAQASVAEYVR+VMSSDRKLGPMKSLQGHIWRQGYADGGIVG VYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLS+YFDTSIGGKKDSASYR
Sbjct:  241 VDVNAAVPSTASAPTGPLLPAPNETAPGSVSLVGVKVLVLDIEGTTTPITFVKQTLFPYAQDHLARHLKDQWECEDLQRLVRELKMQ-AEKDAAVDGGTPGVPQVLDASSAGVEQAQASVAEYVRFVMSSDRKLGPMKSLQGHIWRQGYADGGIVGVVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSSYFDTSIGGKKDSASYR 460          
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: UPI001AAC599A (enolase-phosphatase E1 isoform X2 n=2 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAC599A)

HSP 1 Score: 184 bits (468), Expect = 1.520e-54
Identity = 98/195 (50.26%), Postives = 132/195 (67.69%), Query Frame = 1
Query:  133 GSMSL-AGVKVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVPQVLDPSSAGVEQAQASVAEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 714
            GS+++ A V  ++LDIEGTTTPITFVK+ LFPY Q+++  +L++ W+ E+ Q  VR L++Q AEKD  +DG  P     +  +   V+Q    V + V + MS DRK   +K LQGH+WR  YA G + GEVYADV PA R+W +AGK+L I+SSGS EAQ+LLFG S  GDL  Y   +FDT++G K +S SYR
Sbjct:    2 GSLTVPACVSTVLLDIEGTTTPITFVKEILFPYIQDNVKEYLENHWQEEECQEDVRHLRLQ-AEKDCELDGFVP-----IPMNQTEVQQIIQGVVDNVHWQMSLDRKTTALKQLQGHMWRAAYASGQVKGEVYADVVPALRKWKEAGKKLYIFSSGSVEAQKLLFGYSIEGDLLEYFQGHFDTTVGLKVESESYR 190          
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: A0A7S3YEZ8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEZ8_HETAK)

HSP 1 Score: 184 bits (468), Expect = 3.630e-54
Identity = 98/186 (52.69%), Postives = 129/186 (69.35%), Query Frame = 1
Query:  157 KVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVPQVLDPSSAGVEQAQASVAEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 714
            KV++LDIEGTTTPITFV   +FPYA++++A +L   W  E+    V  L+ Q AE+DA  DG    VP       A  E+ +A+V   V++ +S DRK+  +K LQGH+WR G+  G + GEVY+DV PA  RWT+ G R+AIYSSGSREAQ+LLFG + AGDLR YLS YFDT +G K+++ASYR
Sbjct:   33 KVILLDIEGTTTPITFVHDVMFPYARDNVAGYLDAHWGQEECMADVAALRAQ-AEQDAR-DGVAGLVPIPSAEGGASDEEIRAAVVANVQWQISIDRKITALKQLQGHVWRFGFHSGALKGEVYSDVPPALDRWTEDGLRVAIYSSGSREAQQLLFGHTNAGDLRSYLSCYFDTKVGHKREAASYR 216          
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: A0A1L1RQM2_CHICK (Enolase-phosphatase E1 n=7 Tax=Galliformes TaxID=8976 RepID=A0A1L1RQM2_CHICK)

HSP 1 Score: 177 bits (450), Expect = 3.270e-51
Identity = 92/204 (45.10%), Postives = 135/204 (66.18%), Query Frame = 1
Query:  115 PNGPVSGSMSL----AGVKVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVPQVLDPSSAGVEQAQASVAEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 714
            P  P++ +M +    AGV+ ++LD+EGTTTPI FV++TLFPY ++++ ++L+  WE E+ QR V  L+ QQA++D+ +DG  P +P         +E+   +V + V + M+ DRK   +K LQGH+WR  YA G + GE++ DV PA R+W +AG ++ IYSSGS EAQ+LLFG ST GD+      +FDT IG K +S SYR
Sbjct:   40 PRSPLAAAMGVLPVPAGVRAILLDVEGTTTPIAFVQETLFPYIRDNVEQYLRAHWEEEECQRDVGLLR-QQAQEDSGLDGAVP-IPLESGSGDEELERVIRAVVDNVHWQMALDRKTTALKQLQGHMWRAAYATGLVKGEIFEDVVPAIRKWREAGMKVYIYSSGSVEAQKLLFGYSTEGDILELFDGHFDTKIGPKVESESYR 241          
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: UPI0001CBBC7D (enolase-phosphatase E1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBBC7D)

HSP 1 Score: 176 bits (447), Expect = 4.250e-51
Identity = 93/191 (48.69%), Postives = 126/191 (65.97%), Query Frame = 1
Query:  145 LAGVKVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVPQVLDPS-SAGVEQAQASVAEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 714
            L  VK ++LDIEGTTTPITFVK  LFPY +EHL +++K  W  +D++  V  L+ +QA+ D  +DG  P +P   DPS    V   Q +V + V ++M +DRK+  +K LQGH+WR GY +G + G+VY DV PA + W  +G+++ IYSSGS EAQ+LLFG S  GDL    S +FDT IG K +  SYR
Sbjct:   18 LVNVKAIILDIEGTTTPITFVKDVLFPYIREHLEKYIKTNWNEKDVKEDVDALR-KQAKADHDIDGAVP-IPDSFDPSCQKEVISVQDAVIKNVLWLMDADRKITALKQLQGHMWRSGYENGVLKGQVYDDVVPAIKHWILSGRKVYIYSSGSVEAQKLLFGYSEKGDLLELFSGFFDTVIGAKIEEDSYR 206          
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: A0A8J6F5N2_ELECQ (Enolase-phosphatase E1 n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6F5N2_ELECQ)

HSP 1 Score: 176 bits (445), Expect = 4.410e-51
Identity = 96/189 (50.79%), Postives = 124/189 (65.61%), Query Frame = 1
Query:  148 AGVKVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVPQVLDPSSAGVEQAQASVAEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 714
            A V  ++LDIEGTTTPITFVK  LFPY Q+H+  +L+  W  E+ Q  VR+L++Q AEKD+ V G  P VP    P +  ++ A     + V + MS DRK   +K LQGH+WR  YA G + GEVY DV PA ++W +A  +L I+SSGS EAQ+LLFG S  GDL   L  +FDTS+G K +SASYR
Sbjct:    8 ASVTAVLLDIEGTTTPITFVKDILFPYIQDHVEEYLQKHWPEEECQEDVRQLRLQ-AEKDSGVKGFVP-VPSSAKPPAEIIKGA----VDNVLWQMSLDRKTTALKQLQGHMWRSAYATGKVKGEVYDDVVPALKKWKEANLKLYIFSSGSVEAQKLLFGYSIEGDLLELLHGHFDTSVGSKVESASYR 190          
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: A0A813BMF1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BMF1_9DINO)

HSP 1 Score: 180 bits (456), Expect = 9.080e-51
Identity = 96/187 (51.34%), Postives = 128/187 (68.45%), Query Frame = 1
Query:  166 MLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVP-QVLDPSSAGVEQAQASV----AEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASY 711
            +LDIEGT  P+TFV +TLFP+  EH+  HL+ +W SE++   VR L    AE  AA   G   +P   ++ + AG   A+++V       V++++S+DRK+G +K+LQGHIWR GY  G + GEVY D + A  RW  AGK++ IYSSGSREAQRLLF  S+AGDLRP LS YFDT+ GGKK++ASY
Sbjct:  186 LLDIEGTLAPVTFVTKTLFPFVTEHVQEHLEAKWGSEEVASDVRALAALAAEDSAAGLPGAVAIPADKVEAALAGDAAAKSAVLPAVVASVKWLVSTDRKVGALKTLQGHIWRGGYEAGTLKGEVYEDTKAALERWVAAGKKVYIYSSGSREAQRLLFKYSSAGDLRPLLSGYFDTTSGGKKEAASY 372          
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: A0A7L0EJF3_TROML (ENOPH phosphatase (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L0EJF3_TROML)

HSP 1 Score: 174 bits (442), Expect = 1.400e-50
Identity = 94/194 (48.45%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  148 AGVKVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVPQVLDPSSAG-----VEQAQASVAEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 714
            A V+ ++LDIEGTTTPI+FV++TLFPY ++++  +L+  WE E+ QR VR L+ +QA++D+++DG       VL P  +G     +EQ   +V + V + MS DRK   +K LQGH+WR  YA G I GE++ DV PA R+W +AG ++ IYSSGS EAQ+LLFG ST GD+      +FDT IG K +S SYR
Sbjct:    8 AEVRAILLDIEGTTTPISFVQETLFPYIKDNVKEYLRTHWEEEECQRDVRLLR-KQAQEDSSLDGA------VLIPLESGSGEEELEQLIQAVVDNVYWQMSLDRKSTALKQLQGHMWRAAYATGHIKGEIFEDVVPAIRKWREAGMKVYIYSSGSIEAQKLLFGYSTEGDILELFDGHFDTKIGPKVESESYR 194          
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Match: A0A8B9IX87_9PSIT (Enolase-phosphatase 1 n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9IX87_9PSIT)

HSP 1 Score: 173 bits (438), Expect = 2.620e-50
Identity = 89/189 (47.09%), Postives = 127/189 (67.20%), Query Frame = 1
Query:  148 AGVKVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRELKMQQAEKDAAVDGGTPGVPQVLDPSSAGVEQAQASVAEYVRYVMSSDRKLGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGSREAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR 714
            A V+ ++LDIEGTTTPI FV++TLFPY ++++  +L+  WE E+ QR V  L+ +QA++D+++DG  P +P         +E+   +V + V + MS DRK   +K LQGH+WR  YA G + GE++ DV PA R+W +AG ++ IYSSGS EAQ+LLFG ST GD+      +FDT IG K +S SYR
Sbjct:    8 AEVRAILLDIEGTTTPIAFVQETLFPYIKDNVKEYLRAHWEEEECQRDVGLLR-KQAQEDSSLDGAVP-IPLESGSGEEELERVIQAVVDNVHWQMSMDRKTTALKQLQGHMWRAAYATGLVKGEIFKDVVPAIRKWREAGMKVYIYSSGSIEAQKLLFGYSTEGDILELFDGHFDTKIGPKVESESYR 194          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14364.3364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG2_9PHAE7.680e-13294.12Probable methylthioribulose-1-phosphate dehydratas... [more]
D7FXI6_ECTSI1.450e-13190.95Haloacid dehalogenase-like hydrolase family protei... [more]
UPI001AAC599A1.520e-5450.26enolase-phosphatase E1 isoform X2 n=2 Tax=Rana tem... [more]
A0A7S3YEZ8_HETAK3.630e-5452.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1L1RQM2_CHICK3.270e-5145.10Enolase-phosphatase E1 n=7 Tax=Galliformes TaxID=8... [more]
UPI0001CBBC7D4.250e-5148.69enolase-phosphatase E1-like n=1 Tax=Saccoglossus k... [more]
A0A8J6F5N2_ELECQ4.410e-5150.79Enolase-phosphatase E1 n=2 Tax=Eleutherodactylus c... [more]
A0A813BMF1_9DINO9.080e-5151.34Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7L0EJF3_TROML1.400e-5048.45ENOPH phosphatase (Fragment) n=3 Tax=Neognathae Ta... [more]
A0A8B9IX87_9PSIT2.620e-5047.09Enolase-phosphatase 1 n=1 Tax=Amazona collaria Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14364contigEcto-sp13_S_contig14364:471..3602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score393.3
Seed ortholog evalue8.2e-107
Seed eggNOG ortholog2880.D7FXI6
Preferred nameMDE1
Model size714
KEGG rclassRC01866,RC01939,RC02018,RC02118,RC02779
KEGG koko:K08964,ko:K08967,ko:K09880,ko:K16054
KEGG ReactionR07363,R07364,R07392,R07395
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0001932,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009966,GO:0009987,GO:0010646,GO:0010941,GO:0012501,GO:0016043,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016829,GO:0016835,GO:0016836,GO:0017144,GO:0019220,GO:0019222,GO:0019509,GO:0019752,GO:0022607,GO:0023051,GO:0031323,GO:0031399,GO:0032268,GO:0042325,GO:0042578,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043094,GO:0043102,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043436,GO:0043874,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046570,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0060255,GO:0060548,GO:0065003,GO:0065007,GO:0070269,GO:0070372,GO:0071265,GO:0071267,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902531
Exons5
EggNOG free text desc.acireductone synthase activity
EggNOG OGsCOG0235@1,COG4229@1,KOG2630@2759,KOG2631@2759
EC1.13.11.53,1.13.11.54,3.1.3.77,4.2.1.109
Cds size714
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.0283122-CDS-Ecto-sp13_S_contig14364:470..5781681462767.0283122-CDS-Ecto-sp13_S_contig14364:470..578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14364 471..578 -
1681462767.0395806-CDS-Ecto-sp13_S_contig14364:1481..16131681462767.0395806-CDS-Ecto-sp13_S_contig14364:1481..1613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14364 1482..1613 -
1681462767.0487652-CDS-Ecto-sp13_S_contig14364:2255..24171681462767.0487652-CDS-Ecto-sp13_S_contig14364:2255..2417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14364 2256..2417 -
1681462767.0588434-CDS-Ecto-sp13_S_contig14364:2902..29811681462767.0588434-CDS-Ecto-sp13_S_contig14364:2902..2981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14364 2903..2981 -
1681462767.0680254-CDS-Ecto-sp13_S_contig14364:3369..36021681462767.0680254-CDS-Ecto-sp13_S_contig14364:3369..3602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14364 3370..3602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14364.3364.1prot_Ecto-sp13_S_contig14364.3364.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14364 471..3602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14364.3364.1

>prot_Ecto-sp13_S_contig14364.3364.1 ID=prot_Ecto-sp13_S_contig14364.3364.1|Name=mRNA_Ecto-sp13_S_contig14364.3364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
MALCVVPNHAGVATKKQVDVKAVAPSTVAAPTGPSLPAPNGPVSGSMSLA
GVKVLMLDIEGTTTPITFVKQTLFPYAQEHLARHLKDQWESEDLQRLVRE
LKMQQAEKDAAVDGGTPGVPQVLDPSSAGVEQAQASVAEYVRYVMSSDRK
LGPMKSLQGHIWRQGYADGGIVGEVYADVEPAFRRWTQAGKRLAIYSSGS
REAQRLLFGKSTAGDLRPYLSAYFDTSIGGKKDSASYR
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mRNA from alignment at Ecto-sp13_S_contig14364:471..3602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14364.3364.1 ID=mRNA_Ecto-sp13_S_contig14364.3364.1|Name=mRNA_Ecto-sp13_S_contig14364.3364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14364:471..3602- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTTGTGTGTTGTCCCCAATCACGCGGGCGTGGCCACCAAAAAACA GGTCGACGTCAAGGCCGTCGCACCATCAACGGTAGCTGCACCCACGGGGC CGTCGTTGCCGGCGCCTAACGGGCCCGTGTCAGGATCCATGTCCCTGGCA GGGGTGAAGGTGCTGATGCTCGACATCGAGGGGACCACCACCCCCATCAC CTTCGTCAAGCAGACCCTCTTCCCCTACGCCCAGTGAGTCAGCCCTTTGG TCGTCTTCCTGCTGTAGATGCCACGATGTTGTTGTGTGAGGGGGTAGGGG GGGTACGGTGTTTGACTTTTATTCCGCCGTGCCCCCGTCCCACGGCTAGT GCGACCTGCGCGGTGACTAAATAACGTCTCATACAGGGGTTGCAGTCGAT TTTGGTCCAGAGTTTTTTTTTTGTTTCTGTCTGCGCGTTGTTCTTCCCAC CGACTGCTGTTTCGTCGTTCTCGGACCCCAAAAATTGTCCATCCATCCAT CCATCCATGATCGTCGCGAAGCTCGTCGCCCATCAACATCACGTCCAATT TCACCAACTAACACCAATCTCACCCCTACTACCACCACCACAACAACAAT AACGACAATGATAACGAAAAGGGAACACCTGGCCCGCCACCTCAAGGACC AGTGGGAAAGCGAGGACTTGCAGCGGCTCGTGCGGGAGCTCAAGATGCAG GTGAGAGAGAACATTTCATATTTTATTTTACCCGTTTCTTTTACGGCGTA GAAAGCCCGACGACGTTGCACCGAATACCTCTTTCGGGCAGGTATTGCGT TCCTCTTTGTGTGCATGCAGCACCACCTGTTTACCGTGGGATGCTGAAAG GCTGGTGCTTGTCTGCCTCGTCGACTCTGTGTACGAACTGCGGATATACC GTCGTATTTTTTAAGGTTGTGTGTGTGCCTTGTCCAAGCCTTGCAGTTAA CAGATTTCTGGTTGTGTTGTGTTGTTTGTTGTTCTTTTTGTTGTTATCGT TGTTTTTGTTGTTGTTGGTGGTGGTAGTGGGGGTACGGGCACTCTCAGCC GGCTCCGAACCGTTGAGTACGTTCCGCTGATACTGTTGTTGTTGTTGCTG CTGCTGATGTTGCTGCTGCTGCTGCTGTTGTGGTACTGCTGCTGCTGCTG CTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGAGCAGGCGGAAAAAGAC GCGGCAGTCGACGGCGGCACGCCCGGAGTCCCCCAAGTGTTGGACCCCTC GTCCGCAGGGGTCGAGCAGGCGCAGGCTTCGGTGGCGGAGTACGTACGCT ACGTCATGTCTTCCGACAGGAAGCTAGGACCGATGAAGTCCTTGCAGGTC TGGCATTATAGCATCGTTTTGTGTCGTTGAGTGGCGTTGTGTGCGTACCG CCTGCCGCTGCTGGCTTCTTTTATTTTTGTCCATTCTAGAAGTTATCATT TCTGCTCTGGTACGGCGTGCACTTGTGTTTTTGTCGGATGTTGAATCCCC GTTCCGCGCCTTCCTAGGTGCTTGTGGGTTCCTTCGCTCGTGGAAGTTTG CTTCACCGTCCGTCCGTCCGTCTGTTTGCGAGCAAGGGTCGAACACTTGT AAACGCTTATGTTCGTTTTCGAGTATGGTCTCTCCCTCTCTCGCGCTCTG TCGCTCTGTCTCTGCGTCTGTCCCTCTCTCTGTTCCTGCCTTCGTGCCTG CCTGCCTGCCTGTCTCTCTGTCCATGTGCCTCTCTGTCTCTTGTCTCTCA CTCTGTTTGTCTGTATCTGTCTCTCCCTCGTTGCCCCTCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCCTTCCCGCGTCGCG GCCCGGCAGCNNNNNNNNNNCCTGTCCTTCTTGCCTTGTGCCTTTCTTTC TTTTTTTTTTCCCTCTTTTTTTTTTTTTTTTTTTTTCCCCCCTTGCCCCC CCCCCCCCCCCCCTCTCTCTCTCTATCTCTCTAATTCAGGGCCATATCTG GCGGCAGGGGTACGCCGACGGCGGTATAGTCGGAGAGGTGTACGCAGACG TAGAGCCAGCGTTCCGGCGATGGACACAAGCCGGCAAGAGACTCGCCATC TACTCAAGCGGCAGCAGAGAGGTATAAGACCAGTCTTGTTGCATGCCTTC TACGTAGAGTCCGGCTATACGAAAAAGAAAGAAAAGCTCGTGTTGACGGT CGAAGGGTAAGGGTGTCTCGCCCCCTACGTGAGACCTCACGGGACTGGGT GCATTGGTGGGGATTGTCGTTGCTGTTGCTGTTATTGCAGTAAAAAGTGG TCGGAGTGGTCGAAGTAATAGTGGTAGGTTGTCGTTGTTTTCATCGCATT TTATGACCCTTCCGGTCTCTACGTAGTACCTTCGAATATCCGTACTGGTC CAACCGACCCGGATGCCTCCCGTGGTCGCAGGCCAACTACCCTAAGAGGG TACCACACGCTGGTAGGGAAAGAGATGGCCAGCCGGCTCAATGCCTCGCC CTCCCACATGCGTGTCAGGACGGAGCGAGCCCCTTCCCCCCAACGCAGAG AGAAATTTAAGAAAGTTGACCCACCTATTATAAAACACACTATGTACCGC GTGCGCAGATCGTTACGCGCTGCGAGGATATGTGTAACACCCCACCACAC CCTCGTTGTGTGCTGGAAGATTCTGCGGAGCGTGAAACGTCCTTGCACAT TTTTTTTTGTCATTCTGCATTGGTTGCTTTGGTGTTAACGCGTGTTGTTC TTCGTTCCTTCCGACGTTCTGGGGCAGCGCTATGTTCCCAGCCGCCCTTC GTACGGTGGTAAAGTCTAAATGTCAAGCTCTGAAGGATTTTTGGGAGATT TTTCAAGGAAAGATACAGAAACACACATACATTCCCTTTACGTCTGGTAC CCGGCAAGCGTCTCTTCGTACTACTCAATCGCCCTGCTTTTGTTTTAAGT CACCCTTTTTCATCCTTTTCTACATTTTCCAAGAAAAAAAAAGCATCTCA TGTACATACCCTCCCTTCGCTCAGGCGCAGCGTCTTTTGTTCGGGAAGTC CACGGCGGGAGACCTTCGGCCGTACTTGTCGGCGTACTTCGACACGTCTA TCGGAGGAAAGAAGGACTCTGCCAGCTACAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14364:471..3602-

>mRNA_Ecto-sp13_S_contig14364.3364.1 ID=mRNA_Ecto-sp13_S_contig14364.3364.1|Name=mRNA_Ecto-sp13_S_contig14364.3364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14364:471..3602- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTTGTGTGTTGTCCCCAATCACGCGGGCGTGGCCACCAAAAAACA
GGTCGACGTCAAGGCCGTCGCACCATCAACGGTAGCTGCACCCACGGGGC
CGTCGTTGCCGGCGCCTAACGGGCCCGTGTCAGGATCCATGTCCCTGGCA
GGGGTGAAGGTGCTGATGCTCGACATCGAGGGGACCACCACCCCCATCAC
CTTCGTCAAGCAGACCCTCTTCCCCTACGCCCAGGAACACCTGGCCCGCC
ACCTCAAGGACCAGTGGGAAAGCGAGGACTTGCAGCGGCTCGTGCGGGAG
CTCAAGATGCAGCAGGCGGAAAAAGACGCGGCAGTCGACGGCGGCACGCC
CGGAGTCCCCCAAGTGTTGGACCCCTCGTCCGCAGGGGTCGAGCAGGCGC
AGGCTTCGGTGGCGGAGTACGTACGCTACGTCATGTCTTCCGACAGGAAG
CTAGGACCGATGAAGTCCTTGCAGGGCCATATCTGGCGGCAGGGGTACGC
CGACGGCGGTATAGTCGGAGAGGTGTACGCAGACGTAGAGCCAGCGTTCC
GGCGATGGACACAAGCCGGCAAGAGACTCGCCATCTACTCAAGCGGCAGC
AGAGAGGCGCAGCGTCTTTTGTTCGGGAAGTCCACGGCGGGAGACCTTCG
GCCGTACTTGTCGGCGTACTTCGACACGTCTATCGGAGGAAAGAAGGACT
CTGCCAGCTACAGG
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