mRNA_Ecto-sp13_S_contig1435.3358.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1435.3358.1
Unique NamemRNA_Ecto-sp13_S_contig1435.3358.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1435.3358.1 vs. uniprot
Match: D7G2S6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S6_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 4.440e-69
Identity = 225/360 (62.50%), Postives = 246/360 (68.33%), Query Frame = 3 
Query:   51 GPSASAKKKGGAVPGKSKAATVTAPAPVKTTRGGAPVKRKAEAGXXXXXXXXXXXXXXXXXAKETEDEKVGREKAMEVLVTEKDEKFAKMFDTRTKNQSKQGGIAGDDINRSRRS--MAELAKHLSSITPKTGVSSTAVPGGGTKLRPAHGLDQHDGGVNIQSATRGPNGATETHPLSPGRQGRSSTYKDRSDSRSGXXXXXXXXXXXXRDRDRGCHRSGSYGRYGRGRYRSPDSSRGRHGSRPRDGGGWSKGVSRXXXXSHYRSDHRHYAGRHEDDERRYRGRYGDFRYSRSRSGSPHSRLHGRRRDSRHRPYHRQXXXXXXXXXXXXXXXXXXXXXXXGRSPSRQRRSLRDTPRDTGG 1124
            GPSASAKK GG  PGKSKA +  APA V                XXXXXXXXXXXXXXXXX KETE EK  REKAMEVL+ EKD+K+  ++++RTK QS+QG  A  D+ ++      AELAKHL S TP TG  STAVPG GTK+RPAHGLDQH+GGVN QSAT GPNGATET PLSPGRQGRSSTY++RSDSRS XXXXXXXXXXX  D DRG HRS                    HGSRPRDGGG  KGVSR    S  RS+                      RYSRSRSGS HSR++G RRDSRHRP+HRQXXXXXXXXXXXXXXXXXXXXXXX     RQRRSL+DTPRDT G
Sbjct:   20 GPSASAKKNGGGAPGKSKAGSSKAPASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKETEAEKDAREKAMEVLLAEKDKKWDALYNSRTKKQSRQGERA--DVRKANDDALQAELAKHLPSKTPNTGGPSTAVPGDGTKMRPAHGLDQHEGGVNSQSATLGPNGATETPPLSPGRQGRSSTYRERSDSRSXXXXXXXXXXXXSPDGDRGRHRSXXXXXXXXXXXXXXXXX---HGSRPRDGGGRRKGVSRRYSRSRSRSNXXXXXXXXXXXXXXXXXXXEYSRYSRSRSGSRHSRINGSRRDSRHRPHHRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRRSLKDTPRDTRG 374
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BLAST of mRNA_Ecto-sp13_S_contig1435.3358.1 vs. uniprot
Match: D7FHA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA5_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 1.040e-68
Identity = 129/163 (79.14%), Postives = 135/163 (82.82%), Query Frame = 2 
Query: 1094 PEGHSKRHRRKWSSDRHGGGGTGGYPALLPSGDGGHHSPRRGRSRSESRLKDMGSSTASGARQKSTGNATAPKGDLFEGDESLSMPRAAKLEFEMSRTVGGLRRVVRADRECSSTRTGKKLHDRLKYLNAAGIAYTTMARCNGCHLAAFEGYDDDYPIKAARE 1582
            P    +RHR   SSDR GGGG  GYPAL PSGD G HSPRRGRSRSESRLKDMGSST SGARQ+ST  AT PKGD+FEGDE L+  RAAKLEFEMSRTVGGLRRVVRADRECS TRTGKKLHDRLKYLNAAGIAYTTM R      AAFEGYD+DYPIKAAR+
Sbjct:  184 PRDTRRRHR---SSDRDGGGGACGYPALSPSGDSGQHSPRRGRSRSESRLKDMGSSTGSGARQQSTDAATGPKGDVFEGDEPLAKLRAAKLEFEMSRTVGGLRRVVRADRECSRTRTGKKLHDRLKYLNAAGIAYTTMTRWLK-EFAAFEGYDNDYPIKAARK 342
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1435.3358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2S6_ECTSI4.440e-6962.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHA5_ECTSI1.040e-6879.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1435contigEcto-sp13_S_contig1435:4511..6924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1582
Hectar predicted targeting categoryother localisation
Exons4
Cds size969
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1435.3358.1prot_Ecto-sp13_S_contig1435.3358.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1435 4786..6008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462766.517809-UTR-Ecto-sp13_S_contig1435:4510..47851681462766.517809-UTR-Ecto-sp13_S_contig1435:4510..4785Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1435 4511..4785 +
1681462766.5439792-UTR-Ecto-sp13_S_contig1435:6008..60951681462766.5439792-UTR-Ecto-sp13_S_contig1435:6008..6095Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1435 6009..6095 +
1681462766.5549684-UTR-Ecto-sp13_S_contig1435:6417..66141681462766.5549684-UTR-Ecto-sp13_S_contig1435:6417..6614Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1435 6418..6614 +
1681462766.5633414-UTR-Ecto-sp13_S_contig1435:6870..69241681462766.5633414-UTR-Ecto-sp13_S_contig1435:6870..6924Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1435 6871..6924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462766.5264347-CDS-Ecto-sp13_S_contig1435:4785..49081681462766.5264347-CDS-Ecto-sp13_S_contig1435:4785..4908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1435 4786..4908 +
1681462766.53484-CDS-Ecto-sp13_S_contig1435:5162..60081681462766.53484-CDS-Ecto-sp13_S_contig1435:5162..6008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1435 5163..6008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1435.3358.1

>prot_Ecto-sp13_S_contig1435.3358.1 ID=prot_Ecto-sp13_S_contig1435.3358.1|Name=mRNA_Ecto-sp13_S_contig1435.3358.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
MEVLVTEKDEKFAKMFDTRTKNQSKQGGIAGDDINRSRRSMAELAKHLSS
ITPKTGVSSTAVPGGGTKLRPAHGLDQHDGGVNIQSATRGPNGATETHPL
SPGRQGRSSTYKDRSDSRSGRRGGASTYPSRSRDRDRGCHRSGSYGRYGR
GRYRSPDSSRGRHGSRPRDGGGWSKGVSRRYSRSHYRSDHRHYAGRHEDD
ERRYRGRYGDFRYSRSRSGSPHSRLHGRRRDSRHRPYHRQRSYGRPPSSR
HPSSYSHDEWYSRGRSPSRQRRSLRDTPRDTGGSGVVIATAAVGRVDILR
CCPREMAVTTAHDGDDPGRNPA*
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mRNA from alignment at Ecto-sp13_S_contig1435:4511..6924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1435.3358.1 ID=mRNA_Ecto-sp13_S_contig1435.3358.1|Name=mRNA_Ecto-sp13_S_contig1435.3358.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1435:4511..6924+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGCCGGTAGGAAGGCGGCCTGCGGAGAGCAAGCCCGCTTCGGTGGG
GGTCCGTCCGCCTCGGCAAAGAAGAAGGGCGGCGCTGTGCCTGGTAAGAG
TAAGGCCGCTACAGTGACGGCGCCTGCTCCAGTGAAAACGACACGGGGCG
GGGCGCCTGTGAAGCGGAAGGCCGAGGCTGGTTCGACTTCATCTGCGAAA
GGCAAGGGCAAAAAGAGCAAGCCAGCTCCTCGTGCGAAAGAGACTGAGGA
TGAGAAGGTTGGCAGGGAGAAGGCGATGGAGGTTTTGGTGACCGAGAAAG
ACGAGAAGTTCGCCAAAATGTTCGACACTCGGACGAAGAACCAGAGCAAG
CAGGGCGGCATTGCAGGTGATGATATAAATCGCTCAAGACGATCAATGGT
AATTCGGTGGCATGCTTGATAAACGATTCCCGTTTTAGGCGCTGTGTCCT
TACGATGATATGTCACGCCAAACCGCCTGCTCAACTTTATGTGCATAAGG
TTGAGTAGTACAACACCCCTCGCGATGGGCCTGTCTGTCTCTCTTTGTCC
TTTAGTCTGTACGTGCTTTAAAACTAACCCAGGACGTCTAATTACTTTCG
TCTGTTCTTGTGCTCTATTCTTAGGCACTACCTTCCGATTTGCATCCACC
AGGCCGAACTGGCGAAGCACCTGTCCTCTATTACACCCAAGACCGGAGTG
TCGAGTACTGCTGTGCCGGGCGGCGGGACGAAATTGCGGCCCGCGCACGG
GTTAGACCAGCATGATGGGGGTGTCAACATCCAATCGGCCACACGTGGGC
CTAACGGCGCCACGGAGACTCACCCTCTCTCTCCTGGGCGGCAGGGACGA
TCGTCTACCTACAAGGATAGGTCGGACAGTCGCTCAGGAAGGCGGGGAGG
CGCCAGTACCTACCCGTCGCGGTCACGCGACCGCGACCGCGGATGCCACC
GTAGCGGGAGCTACGGGAGGTACGGGAGGGGCCGTTACCGTAGCCCAGAC
TCGAGCAGGGGCCGTCACGGCAGTCGGCCAAGGGACGGCGGCGGTTGGAG
CAAGGGGGTTTCCAGGCGCTACTCACGGTCACATTATCGATCGGACCATA
GGCACTACGCCGGTCGCCACGAAGACGACGAAAGGCGCTATCGGGGAAGG
TACGGAGATTTCCGGTACTCCCGTTCGCGCTCAGGATCACCCCACTCACG
GCTCCACGGAAGACGCAGGGACAGTCGTCATCGGCCGTACCACCGCCAAC
GCTCTTACGGTCGCCCACCCTCTAGCCGCCATCCGTCCTCCTACAGTCAC
GACGAGTGGTACAGTAGGGGGCGCTCGCCAAGCCGCCAGCGCCGCAGCCT
GAGGGACACTCCAAGAGACACCGGCGGAAGTGGAGTAGTGATCGCCACGG
CGGCGGTGGGACGGGTGGATATCCTGCGCTGTTGCCCTCGGGAGATGGCG
GTCACCACAGCCCACGACGGGGACGATCCCGGTCGGAATCCCGCTTGAAA
GACATGGGCAGCTCAACGGCCAGTGGGGCTAGGCAGAAATCCACGGGAAA
TGCGACGGCCCCCAAGGGCGATCTCTTCGAGGGTGGTGAGTAAAAGAGTT
AACGCAGTCCGTTGGTTGGATCTTTACGATGGGTTTTCGTTTCAGTTTAC
TGCATGTGTTCGTTACGATGGGTTTTCGTTTCAGTTTACTGCATGTGTTC
GATGTGCGGTCTTCACGCCCCTACGGATTTCCTCGAAATATTCACGTCGT
AGTCAGCCTCGGCTCTGTATTGCAGGTCGTCGTTGATGCCGACCCTGACC
ACCCACCACTGCGGACCTTTGTATTTATTGAAGCGCACCAGTTCCCACCT
TGTTAGATGCCTGTTATGTCAAACGATAATGCTCACCCCGACGGTCCGGT
TCCGCAGACGAGTCCTTGTCAATGCCTCGGGCGGCGAAGCTTGAGTTCGA
GATGAGCCGGACTGTGGGAGGACTGCGCCGGGTTGTCAGGGCGGACCGCG
AATGCAGCAGCACCCGCACCGGCAAGAAGCTGCATGACCGGCTCAAGTAT
CTCAATGCTGCAGGTATTGCGTACACCACGATGGCAAGGTGCAATGGTTG
CCATGTTTCCGGAATTCGTTCAGCGTTTTGGTTCAACAAGTCATCTTTCT
AGACTGCTCAGTGTTCGGTTGCGTTGCTTCGAACATACGCAAGTGAAGCA
ATGTAGCAACCATCGACGGCGTGGTGGGGTTCTTTCACTTCTGCCCTGTT
TTCAAATTTCAAACTTGCACCCTACACTCGACCACCTCAAACAACATGTC
ATAGGTGCCGCGCTTATTATGCCCATTTCGGCCCGCAATGTGTACACGTG
GCTGCATGAGTTAGCCGCGTTCGAGGGTTACGACGACGACTATCCCATCA
AAGCCGCTAGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1435:4511..6924+

>mRNA_Ecto-sp13_S_contig1435.3358.1 ID=mRNA_Ecto-sp13_S_contig1435.3358.1|Name=mRNA_Ecto-sp13_S_contig1435.3358.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1435:4511..6924+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTTTTGGTGACCGAGAAAGACGAGAAGTTCGCCAAAATGTTCGA
CACTCGGACGAAGAACCAGAGCAAGCAGGGCGGCATTGCAGGTGATGATA
TAAATCGCTCAAGACGATCAATGGCCGAACTGGCGAAGCACCTGTCCTCT
ATTACACCCAAGACCGGAGTGTCGAGTACTGCTGTGCCGGGCGGCGGGAC
GAAATTGCGGCCCGCGCACGGGTTAGACCAGCATGATGGGGGTGTCAACA
TCCAATCGGCCACACGTGGGCCTAACGGCGCCACGGAGACTCACCCTCTC
TCTCCTGGGCGGCAGGGACGATCGTCTACCTACAAGGATAGGTCGGACAG
TCGCTCAGGAAGGCGGGGAGGCGCCAGTACCTACCCGTCGCGGTCACGCG
ACCGCGACCGCGGATGCCACCGTAGCGGGAGCTACGGGAGGTACGGGAGG
GGCCGTTACCGTAGCCCAGACTCGAGCAGGGGCCGTCACGGCAGTCGGCC
AAGGGACGGCGGCGGTTGGAGCAAGGGGGTTTCCAGGCGCTACTCACGGT
CACATTATCGATCGGACCATAGGCACTACGCCGGTCGCCACGAAGACGAC
GAAAGGCGCTATCGGGGAAGGTACGGAGATTTCCGGTACTCCCGTTCGCG
CTCAGGATCACCCCACTCACGGCTCCACGGAAGACGCAGGGACAGTCGTC
ATCGGCCGTACCACCGCCAACGCTCTTACGGTCGCCCACCCTCTAGCCGC
CATCCGTCCTCCTACAGTCACGACGAGTGGTACAGTAGGGGGCGCTCGCC
AAGCCGCCAGCGCCGCAGCCTGAGGGACACTCCAAGAGACACCGGCGGAA
GTGGAGTAGTGATCGCCACGGCGGCGGTGGGACGGGTGGATATCCTGCGC
TGTTGCCCTCGGGAGATGGCGGTCACCACAGCCCACGACGGGGACGATCC
CGGTCGGAATCCCGCTTGA
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