mRNA_Ecto-sp13_S_contig14335.3355.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14335.3355.1 vs. uniprot
Match: D7FTQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ9_ECTSI) HSP 1 Score: 763 bits (1971), Expect = 6.450e-268 Identity = 430/518 (83.01%), Postives = 452/518 (87.26%), Query Frame = 1
Query: 406 MDDDARNTFMDNNANLLKEADAERDTSEKVTKARDAQQVQQREEAQERARTVFEEKSAEVKREXXXXXXKQELKTARAAEEAEQNRKQAEQERQARMGERIKAADPKETKEDTGVDSSVAPTAGSGTAAAHPRPQRTVLGETRKDAPISGVQDSSGAGAGGANYPELPWAVQAMGVRAEKAWVPVEQREVESRKGVEATPTGEMPEEALALGKRTQGLQSALEDYDTHGVNALPAVVVEKEAFAGLKDEHTNEVRNDPTYRDMAESVKDLEVPLAKERASSEAVDGQAGLEPDLERDATSEDEAVIAPSNDRRQQNTRMTESVKGLEFPLAQERATSEALDGQVGSEADLERDATSEDSAGIKLSNDGPRQKEAAATGAVVAKRGALDDGIKYTGGAFQKSREYPKAVGAENVEDPELSLVEQNYPPHERLGKGEAAAENGLDAGSENSAVTNLANDRVSLETFMEEHVQGSETPLVLQDGPASNFDDPDDESAMAENATKSSSEDTLGPIYHEGLIA 1959
MDDDARN+FMDNNANLLKEADAERDTSE+V KARDAQQVQQREEAQERAR FEEKSAEVKREXXX KQEL+TARAAE IKA DPKETKEDTGVDSS A TAGSGTAAAHPRPQR V GETR DAPISGVQDSSGAGAGGA+YPELPWAVQAM V AEKAWVP E+R VESR+G EATPTGEMPEEALA G+RTQGLQSALEDY+TH VNALPAVVVEKEA+AGLKDE T EVRNDPTYRDMAESVK LEVPL KERASSEAVDGQAGLE DLERDATSED+A IAPSNDRRQQN RMTE VKGLEFPLAQE A SEALDGQ GSEADLERDATSEDSAGI+L N+G QKEA+ATGAV+AK+GALDDG+KYTGGAFQKSREYP+A+ AENVED ELSLVEQN PP ERLGKGEAA E GLDAGSENSA+TNLANDRVSL+ F+EEHVQGSETPL Q GPA+NFDDPDDESAMAEN TKS SEDTL PIYHEGLIA
Sbjct: 133 MDDDARNSFMDNNANLLKEADAERDTSEEVAKARDAQQVQQREEAQERARKAFEEKSAEVKREXXXLSKKQELETARAAEXXXXXXXXX----XXXXXXXIKAEDPKETKEDTGVDSSAATTAGSGTAAAHPRPQRIVAGETRTDAPISGVQDSSGAGAGGAHYPELPWAVQAMEVEAEKAWVPAEERGVESREGAEATPTGEMPEEALAPGQRTQGLQSALEDYNTHEVNALPAVVVEKEAYAGLKDERTIEVRNDPTYRDMAESVKGLEVPLTKERASSEAVDGQAGLELDLERDATSEDDAAIAPSNDRRQQNIRMTERVKGLEFPLAQEGAPSEALDGQAGSEADLERDATSEDSAGIELPNNGRHQKEASATGAVLAKQGALDDGLKYTGGAFQKSREYPEALSAENVEDSELSLVEQNDPPRERLGKGEAATETGLDAGSENSAITNLANDRVSLQAFIEEHVQGSETPLERQSGPANNFDDPDDESAMAENGTKSGSEDTLEPIYHEGLIA 646
BLAST of mRNA_Ecto-sp13_S_contig14335.3355.1 vs. uniprot
Match: A0A6H5K033_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K033_9PHAE) HSP 1 Score: 620 bits (1599), Expect = 5.220e-212 Identity = 389/631 (61.65%), Postives = 412/631 (65.29%), Query Frame = 1
Query: 1 RKREVPRPAVHKACVDGFNAGLAATTTLVTKRIESVSGMVTIWHEVMFWARKGHLPPQKCRS*LIRRK*RY*TVNGGRRFQAILGRKNILLCSLKFLRDPTKGLF*R*NVPGLVRLFHPVLNSAVHYICLSTPP*MDDDARNTFMDNNANLLKEADAERDTSEKVTKARDAQQVQQREEAQERARTVFEEKSAEVKREXXXXXXKQELKTARAAEEAEQNRKQAEQERQARMGERIKAADPKETKEDTGVDSSVAPTAGSGTAAAHPRPQRTVLGETRKDAPISGVQDSSGAGAGGANYPELPWAVQAMGVRAEKAWVPVEQREVESRKGVEATPTGEMPEEALALGKRTQGLQSALEDYDTHGVNALPAVVVEKEAFAGLKDEHTNEVRNDPTYRDMAESVKDLEVPLAKERASSEAVDGQAGLEPDLERDATSEDEAVIAPSNDRRQQNTRMTESVKGLEFPLAQERATSEALDGQVGSEADLERDATSEDSAGIKLSNDGPRQKEAAATGAVVAKRGALDDGIKYTGGAFQKSREYPKAVGAENVEDPELSLVEQNYPPHERLGKGEAAAENGLDAGSENSAVTNLANDRVSLETFMEEHVQGSETPLVLQDGPASNFDDPDDESAMA 1893
RKREVPRPAVH+ACVDGFNAGLAATTTLVTKRIES MDDDARN+FM NNANLLKEADAERDTS++V KARDAQQVQQREEAQE AR FEEKSAEV+RE KQEL+T R DPK+TKEDTGVDSS A T SGTAAAH R QR + ETRKDAPISG +D SGAGAGGA+YPELPWAVQAMGV AEKAWVPVE+RE+ESR+ EATPTGEM EEAL GKRTQGLQSALEDYDTH VNALPAVVVEKEA+AGLKDE T VRNDPTYRDMAESVK LEVPL KERASSEAVDGQAGLEPDLERDATSED+A IA SNDRRQQ+ RM SVKGLEFPLAQE A SEAL+GQ GSEADLER ATSE SAG++LSN G QKE AATGAV+AKRGALDDG+KYTGGAFQ+S AE GLDAGSENS VTNLANDRV LE FM+EHVQGSE PLV QDGPASNFDDPDDESA A
Sbjct: 129 RKREVPRPAVHRACVDGFNAGLAATTTLVTKRIES----------------------------------------------------------------------------------------------------MDDDARNSFMQNNANLLKEADAERDTSKEVAKARDAQQVQQREEAQESARKAFEEKSAEVQREKEALSKKQELETTRVXXXXXXXXXXXXXXXXXXXXXXXXXXDPKDTKEDTGVDSSAATTDRSGTAAAHSRLQRIIPEETRKDAPISGAKDFSGAGAGGAHYPELPWAVQAMGVEAEKAWVPVEERELESRESAEATPTGEMLEEALTPGKRTQGLQSALEDYDTHEVNALPAVVVEKEAYAGLKDERTIGVRNDPTYRDMAESVKGLEVPLKKERASSEAVDGQAGLEPDLERDATSEDDAAIALSNDRRQQSIRM--SVKGLEFPLAQEGAPSEALNGQAGSEADLERGATSEKSAGVELSNSGWHQKEVAATGAVLAKRGALDDGLKYTGGAFQQS-----------------------------------PAETGLDAGSENSTVTNLANDRVFLEAFMQEHVQGSEAPLVQQDGPASNFDDPDDESATA 622
BLAST of mRNA_Ecto-sp13_S_contig14335.3355.1 vs. uniprot
Match: A0A6H5JNR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR2_9PHAE) HSP 1 Score: 582 bits (1501), Expect = 1.450e-199 Identity = 367/631 (58.16%), Postives = 390/631 (61.81%), Query Frame = 1
Query: 1 RKREVPRPAVHKACVDGFNAGLAATTTLVTKRIESVSGMVTIWHEVMFWARKGHLPPQKCRS*LIRRK*RY*TVNGGRRFQAILGRKNILLCSLKFLRDPTKGLF*R*NVPGLVRLFHPVLNSAVHYICLSTPP*MDDDARNTFMDNNANLLKEADAERDTSEKVTKARDAQQVQQREEAQERARTVFEEKSAEVKREXXXXXXKQELKTARAAEEAEQNRKQAEQERQARMGERIKAADPKETKEDTGVDSSVAPTAGSGTAAAHPRPQRTVLGETRKDAPISGVQDSSGAGAGGANYPELPWAVQAMGVRAEKAWVPVEQREVESRKGVEATPTGEMPEEALALGKRTQGLQSALEDYDTHGVNALPAVVVEKEAFAGLKDEHTNEVRNDPTYRDMAESVKDLEVPLAKERASSEAVDGQAGLEPDLERDATSEDEAVIAPSNDRRQQNTRMTESVKGLEFPLAQERATSEALDGQVGSEADLERDATSEDSAGIKLSNDGPRQKEAAATGAVVAKRGALDDGIKYTGGAFQKSREYPKAVGAENVEDPELSLVEQNYPPHERLGKGEAAAENGLDAGSENSAVTNLANDRVSLETFMEEHVQGSETPLVLQDGPASNFDDPDDESAMA 1893
RKR VPRPAVHKACV GFNAGLAATT LVTKRIES MDDDARN+FMDNNANLL EADAERDTSE+V ARDAQQVQQ ER KAADPKETKEDTGVDSS A TAGSGTAAAH R QR V GETRKDAPISGVQD SG GAGGA+YPELPWA R+G ++ EM EEAL G RTQGLQSALEDY T+ VNALPA+VVEKEA+AG KDE T E RNDP +R MAESVK L+VPL KERASSEAV GQAGLEPDLERDA +ED+A IA SNDRRQQ+ RMTESVKGLEFPLAQE A SEAL+GQ GSEADLER+A SEDSAG++LSN G QKEAAATGAV+ KRGAL DG+KYTGGAFQKSREYP+A+ AENVED ELSLVEQ PP ERLG+GEAAAE G D GSENS VTNLANDRV LE FMEEHVQGSETPLV QDGP SNFDDPDDESA A
Sbjct: 8 RKRAVPRPAVHKACVGGFNAGLAATTALVTKRIES----------------------------------------------------------------------------------------------------MDDDARNSFMDNNANLLLEADAERDTSEEVATARDAQQVQQ---------------------------------------------------------ERNKAADPKETKEDTGVDSSAATTAGSGTAAAHSRLQRIVPGETRKDAPISGVQDFSGTGAGGAHYPELPWA---------------------GRRGSDSC---EMLEEALTRGTRTQGLQSALEDYHTNEVNALPALVVEKEAYAGFKDERTIEDRNDPAHRGMAESVKGLKVPLKKERASSEAVGGQAGLEPDLERDAATEDDAAIALSNDRRQQSIRMTESVKGLEFPLAQESAPSEALNGQAGSEADLEREAASEDSAGVELSNSGWHQKEAAATGAVLVKRGALHDGLKYTGGAFQKSREYPEALSAENVEDSELSLVEQKEPPRERLGEGEAAAETGFDGGSENSTVTNLANDRVFLEAFMEEHVQGSETPLVQQDGPTSNFDDPDDESATA 457 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14335.3355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14335.3355.1 >prot_Ecto-sp13_S_contig14335.3355.1 ID=prot_Ecto-sp13_S_contig14335.3355.1|Name=mRNA_Ecto-sp13_S_contig14335.3355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=519bp MDDDARNTFMDNNANLLKEADAERDTSEKVTKARDAQQVQQREEAQERARback to top mRNA from alignment at Ecto-sp13_S_contig14335:199..3161+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14335.3355.1 ID=mRNA_Ecto-sp13_S_contig14335.3355.1|Name=mRNA_Ecto-sp13_S_contig14335.3355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14335:199..3161+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14335:199..3161+ >mRNA_Ecto-sp13_S_contig14335.3355.1 ID=mRNA_Ecto-sp13_S_contig14335.3355.1|Name=mRNA_Ecto-sp13_S_contig14335.3355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1557bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14335:199..3161+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |