prot_Ecto-sp13_S_contig14313.3346.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14313.3346.1
Unique Nameprot_Ecto-sp13_S_contig14313.3346.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length344
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14313.3346.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 7.990e-107
Identity = 197/200 (98.50%), Postives = 198/200 (99.00%), Query Frame = 0 
Query:  145 FDELVASGDESLRXXXXXXXXXXXVFSDAGMLPRALELLEEAKAKRLRXXXXXXXTLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLECLDLLRSMHEKGTPPDAICYLAVLKVLDRWDLAEEASLLFEEMRETVEQIALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADN 344
            FDELVASGDESLRXXXXXXXXXXXVFSDAGMLPRALELLEEAKAKRLRXXXXXXXTLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLECLDLLRSMH KGTPPDAICYLAVLKVLDRWDLAEEASLLFEEM ET+EQIALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADN
Sbjct:  464 FDELVASGDESLRXXXXXXXXXXXVFSDAGMLPRALELLEEAKAKRLRXXXXXXXTLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDRWDLAEEASLLFEEMVETIEQIALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADN 663
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14313.3346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK0_ECTSI7.990e-10798.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 14..63
e-value: 2.6E-10
score: 40.3
coord: 158..205
e-value: 4.0E-12
score: 46.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 161..195
e-value: 4.7E-5
score: 21.3
coord: 88..121
e-value: 1.7E-6
score: 25.8
coord: 18..52
e-value: 2.0E-6
score: 25.6
coord: 123..152
e-value: 7.6E-7
score: 26.9
coord: 53..87
e-value: 2.4E-6
score: 25.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 315..338
e-value: 0.21
score: 11.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 78..134
e-value: 7.7E-11
score: 41.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 307..341
score: 7.53
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 51..85
score: 11.794
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 86..120
score: 11.509
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 231..265
score: 8.298
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 15..49
score: 9.197
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 159..193
score: 11.126
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 266..296
score: 6.752
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 194..230
score: 10.731
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 121..155
score: 11.137
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 210..342
e-value: 1.9E-19
score: 72.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 4..96
e-value: 1.5E-26
score: 94.8
coord: 97..209
e-value: 1.4E-34
score: 121.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 7..203
coord: 189..335

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14313contigEcto-sp13_S_contig14313:1..4097 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14313.3346.1mRNA_Ecto-sp13_S_contig14313.3346.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14313 1..4097 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14313.3346.1 ID=prot_Ecto-sp13_S_contig14313.3346.1|Name=mRNA_Ecto-sp13_S_contig14313.3346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp
QQQQQRQEKYGVAPEVRSYNSVISGHERAGEWREALALAKRMEQADGVSP
NVVTFNSVIGACKTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACASG
GKWEVALQLLELMPSEGVTPDLVTYNIALDACVKGGQWEMAMSLFDELVA
SGDESLRPDLYTYNTLMTVFSDAGMLPRALELLEEAKAKRLRPDVVTYST
LIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLE
CLDLLRSMHEKGTPPDAICYLAVLKVLDRWDLAEEASLLFEEMRETVEQI
ALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf