mRNA_Ecto-sp13_S_contig14313.3346.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14313.3346.1
Unique NamemRNA_Ecto-sp13_S_contig14313.3346.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14313.3346.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 7.990e-107
Identity = 197/200 (98.50%), Postives = 198/200 (99.00%), Query Frame = 1 
Query:  433 FDELVASGDESLRXXXXXXXXXXXVFSDAGMLPRALELLEEAKAKRLRXXXXXXXTLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLECLDLLRSMHEKGTPPDAICYLAVLKVLDRWDLAEEASLLFEEMRETVEQIALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADN 1032
            FDELVASGDESLRXXXXXXXXXXXVFSDAGMLPRALELLEEAKAKRLRXXXXXXXTLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLECLDLLRSMH KGTPPDAICYLAVLKVLDRWDLAEEASLLFEEM ET+EQIALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADN
Sbjct:  464 FDELVASGDESLRXXXXXXXXXXXVFSDAGMLPRALELLEEAKAKRLRXXXXXXXTLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDRWDLAEEASLLFEEMVETIEQIALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADN 663
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14313.3346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK0_ECTSI7.990e-10798.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14313contigEcto-sp13_S_contig14313:1..4097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score349.7
Seed ortholog evalue1.5e-93
Seed eggNOG ortholog2880.D7FNK0
Model size1032
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size1032
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14313.3346.1prot_Ecto-sp13_S_contig14313.3346.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14313 1..4097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462765.4693668-CDS-Ecto-sp13_S_contig14313:0..1191681462765.4693668-CDS-Ecto-sp13_S_contig14313:0..119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14313 1..119 -
1681462765.4789898-CDS-Ecto-sp13_S_contig14313:611..8431681462765.4789898-CDS-Ecto-sp13_S_contig14313:611..843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14313 612..843 -
1681462765.487177-CDS-Ecto-sp13_S_contig14313:1146..12311681462765.487177-CDS-Ecto-sp13_S_contig14313:1146..1231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14313 1147..1231 -
1681462765.4952369-CDS-Ecto-sp13_S_contig14313:2044..22381681462765.4952369-CDS-Ecto-sp13_S_contig14313:2044..2238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14313 2045..2238 -
1681462765.5068169-CDS-Ecto-sp13_S_contig14313:3078..31841681462765.5068169-CDS-Ecto-sp13_S_contig14313:3078..3184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14313 3079..3184 -
1681462765.5148354-CDS-Ecto-sp13_S_contig14313:3801..40971681462765.5148354-CDS-Ecto-sp13_S_contig14313:3801..4097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14313 3802..4097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14313.3346.1

>prot_Ecto-sp13_S_contig14313.3346.1 ID=prot_Ecto-sp13_S_contig14313.3346.1|Name=mRNA_Ecto-sp13_S_contig14313.3346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp
QQQQQRQEKYGVAPEVRSYNSVISGHERAGEWREALALAKRMEQADGVSP
NVVTFNSVIGACKTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACASG
GKWEVALQLLELMPSEGVTPDLVTYNIALDACVKGGQWEMAMSLFDELVA
SGDESLRPDLYTYNTLMTVFSDAGMLPRALELLEEAKAKRLRPDVVTYST
LIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISLGRSARPLE
CLDLLRSMHEKGTPPDAICYLAVLKVLDRWDLAEEASLLFEEMRETVEQI
ALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADN
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mRNA from alignment at Ecto-sp13_S_contig14313:1..4097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14313.3346.1 ID=mRNA_Ecto-sp13_S_contig14313.3346.1|Name=mRNA_Ecto-sp13_S_contig14313.3346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4097bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14313:1..4097- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAACAACAACAACGGCAGGAAAAATACGGGGTCGCCCCGGAGGTGAG
GAGCTACAACTCCGTCATCAGCGGCCACGAGCGGGCGGGGGAGTGGCGCG
AGGCCCTGGCCCTGGCGAAGAGGATGGAGCAGGCGGACGGCGTCTCGCCC
AACGTGGTGACGTTCAACTCCGTCATCGGCGCGTGCAAGACGGCCGGGCG
GCCGGAGGAGGCGCTGGCCGTGCTGGGCATGCTGCGGCGGAAGGGCCTGC
AGCCAGACGTGATCAGCTTCAACAGCGCCATCGGCGCCTGCGCCAGGTTT
GTGCGTGCGTGATATGTGTTTCTTCTTAGTGTGGGTGTTGGTAAGACCGC
GTGTGTGTATGATACGTGTGAGTGTGTTTTGTGTGTAGCAGTTGTAGTTG
GTCGCAGCAAGCCGGATGACATGTTCAAACGGACGTCAACCTCGGCGACA
AAATTGGCCTGGTGTACTTTTTCGTTTCAGACTAGTGACTCCTCTCGTGC
CCCACCTGTTTTGTCGTGTCTTTTGCCGGCCTTGGTTCCATTTCGCGTAC
GGTGGATCTCGACACGCCGCTCAAGGGATTCTTGATGTTCCTGGCACTTG
TTTAGGAGCCTAACTCACCTTTTGACTGCCCGAGTAAGTAAGTGCACCGC
CCGCCCAATGCTACTGCTGTCTGTGTATCTGTAATCTCTTTGTGGTTTGT
TCGAGGGCGGTTGGCGGCGGGTCCGTCTGTCCCTCGATCTTATTCCCTTA
ATTTTGCAAAAGATACAAGAACAGATACTTGCCCCTTGGTTCTAGAACTT
GAGCGTGGAAATGGCAGAGGGCTAAAAAATGCATTTGTGTCCCCAACGTT
TTGTCGATGCACCTTCAACCGTTTGGTCGTCGTTGTGCGCACACGCGTGC
ACATGCACGCCAGCGGAGGAAAGTGGGAGGTTGCTCTCCAGCTGCTGGAG
CTGATGCCCTCGGAGGGCGTGACGCCAGACCTCGTGACGTACAACATCGC
GCTGGACGCGTGTGTCAAGGTGATGAACTTTTGCGTTTTAGTTTCTTTTT
GTTTCGGTAGTTTGGTGAGCGACTTGTACTGATTTGGGATCATATGCTTC
AGGCGCTCGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGATGAAG
GGTGCTCTTCTTTCTTTTTTATTGGCTCGTCTAGGCGTTGAAGAGGTCGG
GTAGCGTGCTGTCACCGATCGCTGGAGAGGTGCTTCGCAAGGTCTGCAGG
TGTTGTGGAGGTTCGTGTGTGTGTTTGTGTGCATATATGGGTGTTTGCGA
TCTTCCCCGGAAGGGTCTTTCGCGAAAGTCTTGGCACCACGTGTCATGCT
GAGCCGTCCCCTCCTCTTCTCCCCAAAACTCTTGGCCTGCCTCGCGGCGG
TTGTCAAGCTCGACGCGATGAGAATCGAACTGGGCATCTGTCACGGAACT
TGAGGTTTTGGGACGCTTTTGTTGCGCGAAACAAGTTGAGGGTGTCAATC
TCTGGAAACGATGACGCATGTCCTGAAGACCTTGAATGTCACTTTCTGAT
GACGACGATGACGAAACTACGGAAAAATGAAACTTTGCACCGGCCGCCTA
AAAATACGAATTTGTCGGTGTGTTTTTTGTGGCCGGTTCCGGAATGGTGC
ACGCAGGCTCAAATGAAGGTCAAACAAGGAATCGGACCTCGATCATGTCC
AGTAGCAAGTATCAGGTAGGCGCTTCTTGCATGCGGGGCGCTGCAACCGG
CCGGCGCCCCCCCCCCCACCCCCCCCCTCTGACTGCCCCCATGGTTTGGG
TTCTACGAGATATGTGACGCAAACACAAAACGAGATCGTGGAAAACAATT
ATGAAACAGGGCGGTCAGTGGGAGATGGCCATGTCCCTCTTCGACGAGCT
CGTGGCGAGCGGCGACGAGTCCCTTCGCCCGGACCTGTACACGTACAACA
CCCTCATGACGGTCTTCAGCGACGCCGGGATGCTGCCGCGCGCGCTGGAG
CTTCTCGAAGAGGCCAAGGCCAAGCGTCTGCGCCCTGATGTCGTCACGTA
CAGGTGAATAGATGGAAGAAATTGAGAGCGAGGAGGCGGCAGAAAACAGC
CTCATGGACGGGTTGTGACGGCAGTGACGATAGCCCTTGTCGCCTTCGGG
GAAGACACAAGTCAAGGCATGCTACATAGCCCCAAGGGAGGTGTCAGAGG
TGCGCCTCTCACGCGCTGGCAGGCAAGCAAGTAAGAGATGGCACGAACAG
TGTCAAGCACACTCCTCGCCCCCAGTGAGATGCCCGTAACAGCGTGTCTG
TGGGTCTAATTGTGGTGTATCGCCATGTCGCAAAACATTGTTTTCTGTGT
CGGCACCGCTTCTAAGACCGTGCCGTGCGTTGATACAATGAAAAAGCGTC
CTGTTGATTCTCCGTACTATTGCCCACGGGCAACAAGACGACCGCGAGGT
CGGCCGTTAGTGCATGCTGTATCTTGGCCTGCACGTTGGTGTTTGCTGTC
TCCTCCGATTGCTCGGTGTAACTTGCTGGCCCTCACACCCGCCGCGTATC
TAAATTACAGCTAGCTAGCCATGCCGATGCTTCGTTCGATCACGAGCGGG
GACGGGGTTTCTGTTGTCAAAGGCGCTTCTGCTTCTGCGTTGACTGTTGA
TAGAGTCGTTGGTGTTGCGTTTTGCCGCTGCTGTTCGCGGGAGGAGTGTT
GACTATTCTTCTCCACCTTCGTAACCCTTTCCTCCTGCCCCTGTCTGTCT
TGCTCTCTCCCTCGCTCTCCCCTCCCCCCCCTCCCTCTCTCTCTCTTTTG
GCCCTCCCTCTCTCCCTCCCTCTCTCCCCCTTTGTCCCTCTTCCTCTCCC
TCTCTCGGTACAACAGCACCCTCATACGAGCGTGCGAACGGTCGATGCCT
TCCCAGCCCGATGTTGCCCTCAAGCTCGTCTCGGACATGGAGGCCGAGGG
GGTAAGACCGCGAGCATACGCATACCACGCGATAGATGTGGAAGGAATTG
CTGTCGGAATACTCCAGACTACACTCGGATATGATGGGAGGGGACTCCAC
AGCGTGGCGTTGTTGTTTGTTGGTTGCTTCGCCGTGATACGTTTGTTGCT
GGCGGATACTCCACCGGGAAGGGAAGGTAGCGCGGAACGAAAGCATCGAT
TTCATATCCACCCGCCTGTCTCGATCCATCCACCACACACACGGACGCAG
GTAGCATACCTAGTTTCTTATCTATCTTCCCCACCCCCCTTGTGACGAAA
AAAGGTACGCCCCAACAACACCACCTACGTCGGCGTCGCCATCAGCCTCG
GCCGCTCGGCCCGCCCCCTGGAGTGCCTGGACCTGCTGAGATCCATGCAC
GAGAAGGGCACCCCGCCGGATGCCATCTGCTACCTGGCGGTCCTCAAGGT
TCTCGACCGCTGGGACCTGGCGGAGGAGGCTTCGCTGCTCTTCGAGGAGA
TGAGGGAGACCGTTGAGCAGATCGCTCTCATGCCCGGTGCGTGTGTGCGA
ACGTTGCGTGCGTGCGTACATGCCCCGTTTTCTCTTCTCCCTGGTTGCCT
TAGCTGTTTAGGGGAGGGGCGGGGGCTGGTTGAATGTTTTGTTTCACTGC
GAAGGGGGGGGTGAGGTGTTCAGGTCATCCTTTCGAGTGCGTCGTGGGCT
TTCTTGTTTTGGAATCGAGCGTTGATGGCTGGGAGGAGGTTGTTTTGGTG
TGGTGTCTGGGATAAGTTGGTGGGGTAGTTTGTGTTTTTTCTGTGTTGGT
TGTAGAACAAGGACATCTGTGCGACGGGTGCCTTCCCTGTGGCAAGGAAC
GGCGAACCTCGCAACTTGTGCGTGTGAAGGTGCTGCTGGGTCCTCGACTT
TTCTCGTACGATGTCAAAGAACTTTTTTTGTTTCATTTCTACAAACCCCT
CGTTATTCCGACACGCCTCCTCCTCTCTTATCAACTCCGGTTTTTTTCGT
CGCCGTAACGATGGACCACTCGCAACAGCGATCGCCGAGGAGACTTACTG
CTGCGGCATCCGAGCCTTAGAGAGGCTGGGGAAGTGGTCCGAAGCGGTGG
CCCTACTCGACCAGTGGAGACAGAAAGGCTCGTACGATGCAGACAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14313:1..4097-

>mRNA_Ecto-sp13_S_contig14313.3346.1 ID=mRNA_Ecto-sp13_S_contig14313.3346.1|Name=mRNA_Ecto-sp13_S_contig14313.3346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14313:1..4097- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAACAACAACAACGGCAGGAAAAATACGGGGTCGCCCCGGAGGTGAG
GAGCTACAACTCCGTCATCAGCGGCCACGAGCGGGCGGGGGAGTGGCGCG
AGGCCCTGGCCCTGGCGAAGAGGATGGAGCAGGCGGACGGCGTCTCGCCC
AACGTGGTGACGTTCAACTCCGTCATCGGCGCGTGCAAGACGGCCGGGCG
GCCGGAGGAGGCGCTGGCCGTGCTGGGCATGCTGCGGCGGAAGGGCCTGC
AGCCAGACGTGATCAGCTTCAACAGCGCCATCGGCGCCTGCGCCAGCGGA
GGAAAGTGGGAGGTTGCTCTCCAGCTGCTGGAGCTGATGCCCTCGGAGGG
CGTGACGCCAGACCTCGTGACGTACAACATCGCGCTGGACGCGTGTGTCA
AGGGCGGTCAGTGGGAGATGGCCATGTCCCTCTTCGACGAGCTCGTGGCG
AGCGGCGACGAGTCCCTTCGCCCGGACCTGTACACGTACAACACCCTCAT
GACGGTCTTCAGCGACGCCGGGATGCTGCCGCGCGCGCTGGAGCTTCTCG
AAGAGGCCAAGGCCAAGCGTCTGCGCCCTGATGTCGTCACGTACAGCACC
CTCATACGAGCGTGCGAACGGTCGATGCCTTCCCAGCCCGATGTTGCCCT
CAAGCTCGTCTCGGACATGGAGGCCGAGGGGGTACGCCCCAACAACACCA
CCTACGTCGGCGTCGCCATCAGCCTCGGCCGCTCGGCCCGCCCCCTGGAG
TGCCTGGACCTGCTGAGATCCATGCACGAGAAGGGCACCCCGCCGGATGC
CATCTGCTACCTGGCGGTCCTCAAGGTTCTCGACCGCTGGGACCTGGCGG
AGGAGGCTTCGCTGCTCTTCGAGGAGATGAGGGAGACCGTTGAGCAGATC
GCTCTCATGCCCGCGATCGCCGAGGAGACTTACTGCTGCGGCATCCGAGC
CTTAGAGAGGCTGGGGAAGTGGTCCGAAGCGGTGGCCCTACTCGACCAGT
GGAGACAGAAAGGCTCGTACGATGCAGACAAC
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