mRNA_Ecto-sp13_S_contig14311.3345.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14311.3345.1
Unique NamemRNA_Ecto-sp13_S_contig14311.3345.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14311.3345.1 vs. uniprot
Match: D8LJ03_ECTSI (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ03_ECTSI)

HSP 1 Score: 526 bits (1354), Expect = 5.860e-186
Identity = 264/270 (97.78%), Postives = 267/270 (98.89%), Query Frame = 1 
Query:    1 MPGRRSSAGRARGARRQSASQIQWRQASATKVAETGGLEVSGGNGYIDPLKAVDKLKKHGKGLWGMQAIVAFGMSAIAVITDVRYGITYWYTNTAGGGKLREMQYVWAFFNTMCAMCGVWVYLLWNEAVVGVHRDRRVFRQKVHIWMSYFTWAFGLWTTAVVFVSFQTYSFSANYPTDLTCAFFGAVLCCTLSDVWALGKLCSLGTYAARLEEEWRLAPHEPTAPLAMADPLQELEEAMPDMDERDYRKIERERRRSSLAKAKERRKSKA 810
            MPGRRSSAGRARGARRQSASQIQWRQASAT+VAETGGLEVSGGNGYIDPLKA+DKLKKHGKGLWGMQA+VAFGMSAIAVITDVRYGITYWYTNTAGGGKLREMQYVWAFFNTMCAMCGVWVYLLWNEAVVGVHRDRRVFRQKVHIWMSYFTWAFGLWTTAVVFVSFQTYSFSANYPTDLTCAFFGAVLCC LSDVWALGKLCSLGTYAARLEEEWRLAPHEPTAPLAMADPLQELEEA PDMDER YRKIERERRRSSLAKAKERRKSKA
Sbjct:    1 MPGRRSSAGRARGARRQSASQIQWRQASATQVAETGGLEVSGGNGYIDPLKAIDKLKKHGKGLWGMQAVVAFGMSAIAVITDVRYGITYWYTNTAGGGKLREMQYVWAFFNTMCAMCGVWVYLLWNEAVVGVHRDRRVFRQKVHIWMSYFTWAFGLWTTAVVFVSFQTYSFSANYPTDLTCAFFGAVLCCALSDVWALGKLCSLGTYAARLEEEWRLAPHEPTAPLAMADPLQELEEATPDMDERGYRKIERERRRSSLAKAKERRKSKA 270
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BLAST of mRNA_Ecto-sp13_S_contig14311.3345.1 vs. uniprot
Match: A0A6H5KXK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK0_9PHAE)

HSP 1 Score: 451 bits (1160), Expect = 5.270e-159
Identity = 228/263 (86.69%), Postives = 233/263 (88.59%), Query Frame = 1 
Query:    1 MPGRRSSAGRARGARRQSASQIQWRQASATKVAETGGLEVSGGNGYIDPLKAVDKLKKHGKGLWGMQAIVAFGMSAIAVIT--DVRYGITYWYTNTAGGGKLREMQYVWAFFNTMCAMCGVWVYLLWNEAVVGVHRDRRVFRQKV--------------------------HIWMSYFTWAFGLWTTAVVFVSFQTYSFSANYPTDLTCAFFGAVLCCTLSDVWALGKLCSLGTYAARLEEEWRLAPHEPTAPLAMADPLQEL 705
            MPGRRSSAGRARGARRQSASQIQWRQASAT+VAETGGLEVSGGNGYIDPLKA+DKLKKHGKGLWGMQA+VAFGMSAIAVIT  +VRYGITYWYTNTAGGGKLREMQYVWAFFNTMCAMCGVWV+LLWNEAVVGVHRDRRVFRQKV                          HIWMSYFTWAFGLWTTAVVFVSFQTYSFSANYPTDLTCAFFGAVLCC LSDVWALGKLCSLGTYAARLEEEWRLAPHEPTAPLAM DPLQEL
Sbjct:    1 MPGRRSSAGRARGARRQSASQIQWRQASATQVAETGGLEVSGGNGYIDPLKAIDKLKKHGKGLWGMQAVVAFGMSAIAVITGDNVRYGITYWYTNTAGGGKLREMQYVWAFFNTMCAMCGVWVFLLWNEAVVGVHRDRRVFRQKVLMPYLPSSLDVRFLIVVMLQNTSIHVHIWMSYFTWAFGLWTTAVVFVSFQTYSFSANYPTDLTCAFFGAVLCCALSDVWALGKLCSLGTYAARLEEEWRLAPHEPTAPLAMTDPLQEL 263
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BLAST of mRNA_Ecto-sp13_S_contig14311.3345.1 vs. uniprot
Match: A0A835Z6J9_9STRA (B2-adapt-app_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J9_9STRA)

HSP 1 Score: 186 bits (471), Expect = 3.020e-52
Identity = 89/177 (50.28%), Postives = 112/177 (63.28%), Query Frame = 1 
Query:  130 NGYIDPLKAVDKLKKHGKGLWGMQAIVAFGMSAIAVITDVRYGITYWYTNTAGGGKLREMQYVWAFFNTMCAMCGVWVYLLWNEAVVGVHRDRRVFRQKVHIWMSYFTWAFGLWTTAVVFVSFQTYSFSANYPTDLTCAFFGAVLCCTLSDVWALGKLCSLGTYAARLEEEWRLAPH 660
            N +IDP  A+ ++ KH  GL   Q +V   M  +AV++D RYG   WYT+T  GGKLR+MQY WA FN   A  G  V + W E +    RD R+F  +++ + SYFTWAFG+W TAV+F SF  YSF   YPTDLT  F  A  C  +SD W + KLCS+ TY ARL+EEWR APH
Sbjct:   51 NRFIDPAVAIKRITKHTAGLVVAQIVVGVVMLIVAVMSDWRYGFAIWYTDTRAGGKLRDMQYAWAIFNLASAAWGAKVLVSWRERLERT-RDHRLFHTRIYAFASYFTWAFGVWATAVLFASFAGYSFDGLYPTDLTVFFVVAAACALVSDAWGISKLCSISTYCARLQEEWRAAPH 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14311.3345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJ03_ECTSI5.860e-18697.78B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A6H5KXK0_9PHAE5.270e-15986.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6J9_9STRA3.020e-5250.28B2-adapt-app_C domain-containing protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14311contigEcto-sp13_S_contig14311:612..4301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size810
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionBeta-adaptin appendage, C-terminal subdomain
Ec32 orthologEc-20_002190.1
Cds size810
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462765.4069386-CDS-Ecto-sp13_S_contig14311:611..8551681462765.4069386-CDS-Ecto-sp13_S_contig14311:611..855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14311 612..855 +
1681462765.4180515-CDS-Ecto-sp13_S_contig14311:1152..13341681462765.4180515-CDS-Ecto-sp13_S_contig14311:1152..1334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14311 1153..1334 +
1681462765.4278958-CDS-Ecto-sp13_S_contig14311:2950..30411681462765.4278958-CDS-Ecto-sp13_S_contig14311:2950..3041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14311 2951..3041 +
1681462765.4363728-CDS-Ecto-sp13_S_contig14311:3626..38131681462765.4363728-CDS-Ecto-sp13_S_contig14311:3626..3813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14311 3627..3813 +
1681462765.4446235-CDS-Ecto-sp13_S_contig14311:4195..43011681462765.4446235-CDS-Ecto-sp13_S_contig14311:4195..4301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14311 4196..4301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14311.3345.1prot_Ecto-sp13_S_contig14311.3345.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14311 612..4301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14311.3345.1

>prot_Ecto-sp13_S_contig14311.3345.1 ID=prot_Ecto-sp13_S_contig14311.3345.1|Name=mRNA_Ecto-sp13_S_contig14311.3345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=270bp
MPGRRSSAGRARGARRQSASQIQWRQASATKVAETGGLEVSGGNGYIDPL
KAVDKLKKHGKGLWGMQAIVAFGMSAIAVITDVRYGITYWYTNTAGGGKL
REMQYVWAFFNTMCAMCGVWVYLLWNEAVVGVHRDRRVFRQKVHIWMSYF
TWAFGLWTTAVVFVSFQTYSFSANYPTDLTCAFFGAVLCCTLSDVWALGK
LCSLGTYAARLEEEWRLAPHEPTAPLAMADPLQELEEAMPDMDERDYRKI
ERERRRSSLAKAKERRKSKA
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mRNA from alignment at Ecto-sp13_S_contig14311:612..4301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14311.3345.1 ID=mRNA_Ecto-sp13_S_contig14311.3345.1|Name=mRNA_Ecto-sp13_S_contig14311.3345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14311:612..4301+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGGAAGACGCTCATCCGCCGGCCGAGCTCGCGGCGCACGCCGACA
GAGCGCGTCCCAGATCCAATGGCGACAAGCGTCCGCGACGAAAGTTGCGG
AGACGGGAGGGCTTGAAGTATCGGGGGGCAACGGCTATATCGACCCGCTC
AAGGCAGTCGACAAGCTCAAGAAACACGGGAAGGGGTTGTGGGGGATGCA
GGCTATCGTCGCGTTTGGAATGTCTGCGATCGCCGTCATTACTGGTGAGA
GAGAAAAGTATTGCTTGAGGTGCGCTCACGACATCGCTGTCTTTGCATGG
TCAGCGTGCTTTTCTGCCAAGCCAACACAACTTGTGAACCTTATGAAGCT
GTACTCAAAAGTCCCACCTTTGCGAGTTGTACGAGATCATATAGGCACAA
AATGAATTAAGTCGGAGATGCGTTTGAGGCTGTACTTTGTTTTTCGCGCT
AAAAGAATGGTTTCTGCACGACGAAAACAGTACCGAATTTGCTCACTTAC
CTCGGCGACTGCTAGCGACATCGTTCATGTTTCCAATACAGACGTCAGGT
ACGGCATCACGTACTGGTACACCAACACAGCGGGTGGAGGAAAGCTACGT
GAGATGCAGTACGTCTGGGCGTTCTTCAATACCATGTGCGCTATGTGCGG
CGTTTGGGTATACCTGCTCTGGAACGAGGCCGTTGTTGGCGTCCACCGAG
ATCGAAGAGTTTTCAGACAGAAGGTGATGTTGCCTTACCTTCCATCAAGC
ATGGACGCGCGGTTTCTTTTCATTATCATGCTACGAAATACTTCTTTCCA
AATACTAGGCTATACGTCGAAGAAAGCATAGAACATTCCTCGCATGTGAA
GCTGTCCAAATATCGTAGCATTCTAACTGAGTTATGCAGTTCTTTAGAGT
TGCAGTCATCTCGGGGTCATCAAGCATCATGCGGGGTAAAAAGTGTACCT
ACAAGCTATGCGTATCGTGATCTTGCGAGTAAACGAACTTATTGGAGGTT
ACGCACCCATCCGAGTAGTCGAACTGGATTATGCAAAGAAAAAGCAAAGA
ACGGCGTGATGTATTTCGATTCTACACAGGCATCGGCGTTATCGCACCGA
GTCACGCTTGTGGCCAATGAATACCGCAAGTGGCTGCGTACCACTTTTGA
AGCTTTAACGGGTACTCGACAACATTTGCGTTGAGGTTGTAGCCGTGTTT
TGTTACGGATCCTATACCGTAGATCGCTGGTACGCTGGTACCAGTAAGTC
GCTGTAGTGGTACTCAGAATCGCACCTATCGGGATCATCCCACCAGGATT
CCGTGTATTTCCTCACCACTGTGGGGGTGCTCTCACCCATCGGGGTTATG
GCACGGGGGTGCGATAAAAAAGACAAAAAACACAAAAAAACACATTATTT
TAAAAACGATCGCACCCGGTTTGTTCGCTTGCAATATCGCAGTGTTCTCT
CAGAACCAACTGCAGACAACAAGCTTGTTTGACCGTTTAGGAAACAGGAC
AACCTACCTGTCTGGCAAGTTGTTCGACATGTTTATATCGCGAACGAATA
TCGAACGAGTCGGTTCGGAGTAAGTTCGGCTTGTTTCCCCCATTCTCAGG
GTAATATGCGCCGGAGAACTCTAGCGCTGAACTCGAAGAAATCATCGATG
TTCCCACAGAGCATTATAGTACGTGCGAAACGACGTCATTCTGATACCAA
TGAGCACGAGCGCAATGCTTGTGCCGACTAGTTTTGGTGAACACGATTCA
GAGCCACGTCATTCAGAAGTACAAGCTGTAAATGACAGCTTGATCCTACA
AGTAGGGAGATGACAAAGGCGCGGGTCACTTGATGCTCTCGATCCACGAT
TGAGTTGAAAAGGAATTATGTCGTGTCAAGATGTGGCCTCAACCTCTTAG
GGCAAACGCAGATAGTCCTGATGTGGGATACTACCTTAGAGGTATACCTT
CCTGCCATCCCACACCCTACTCTCTATGAAAGTATATCAACTACTGCAAC
AGCGACACTCCTTAACAAAGTGTTTTGCTTCATGTACAACGCGCAAACCT
GACTTCTATGGTGACCTATATTTGCTCGTTTTGGGAAGAATATGGGTGTT
TTCCTTTCTTGAAGGCTGCACGTCGCTTGTCGAATCCTAAAACACTAAAC
CTCGTCAATCTGTCGTCGGAGTTCCAATGACATGTCTCCTGCAATTTCTC
CCTTTCAGCTAAGCCGACCACGCCAGGTGACCGAAGTGATCGATCCGTCC
GCCATCATCCGTTTCTGTTGTTCGTGTTGTGCGTTGAAACACCACCCACC
CTCCCTCGCCCCCTCACTGGATCTCTTCCGTACACCAAGGTGCACATCTG
GATGTCATACTTCACGTGGGCCTTCGGGTTATGGACTACGGCGGTTGTGT
TCGTGAGCTTCCAAACTTACTCTTTCTCCGGTGAGCACACAAGGACGTAC
TGTAGTGATAAGGGTGCTCACAGGCCGCAGCTATTGGCTTCTTCTGATGT
ATCGCTCGGGGATACAACATTTATTGCGATACCACACACACAGCTCACGT
CTCTCGACTCATGTTTACAGGCTGAGCGAGGGCCTTTTGCGTCATATGCT
CTGTTGTGTAAATCTCACAAGTAGGAGCAACAGGAGCCAACTGGCATGCT
CTGTTGTGTATTGTTCACAGGCACGCGGGACAGGAACCGATTTCCCCAGC
GGCTTGCCTTCGCTGTTGATCAAAAAGAATCCTGTTGCACGTGGTCACTC
CGAGGTCAAGTATGCCTTTCTTCGACCGCCTACAGACAAGTTGGTGTTCG
GCCCCATTGTACGTTACGGTGCTGGTGATACTGCCAATACTCGTGTCAAC
GTTCAACCTGGCCTTGTCCCTTTCCCGCCGCACAGAACGAAACACCCTTC
CAACGCCACACTGTGACAGAACCAACATCCTCCTTCCCCTGAAATGCATC
GATTGTATCTCACTGTCCCACCGCGCTTCTCCTTTACCCCACCCCTTTAT
CGTTCTCACTACAAGCCAACTACCCGACGGATCTCACTTGCGCCTTCTTT
GGAGCCGTGCTGTGCTGCACGTTGTCCGACGTGTGGGCGCTGGGAAAGCT
CTGCTCGCTAGGGACTTACGCGGCAAGACTCGAAGAAGAGTGGCGGCTTG
CCCCTCACGAACCGACGGCGCCTCTTGCCATGGCCGATCCACTGCAAGAA
CTGTGAGTCCGCACCTGTCGAAGGGGGAAGGAGGTGTCAGGCACGTTCGT
CGTCACGTCGTCGCTTGCATCCGTCATGTTGCGGCGTTCCTGATACTTTT
GCTTGCGAACACGGGGACAAGGCGGAGTAAGGGGGCGTATGTTTCTTCCC
TCGGCTTGTCTTTTCGACAATCCCTGCTTTTTCGCAGAGAAACGCCGTCC
AAATCCCTGTCGGAGAGAGGGCAGGCGACTAAAATCCTTACCAACTCAAC
GTTGTGCGATCCTCTCTTACGTTGCCCGCTACTCTTGTAATCTCGTTGCT
CCAAGAGCCATCTTACTGATAAATTTGTAGTCTACACATACGGTACACCT
GACACGGATTGGCGGAAATGTGATGTGCTTGCAGTGAAGAAGCAATGCCA
GATATGGACGAGAGGGACTACAGGAAAATAGAGCGAGAGAGGAGGAGGAG
CAGCCTAGCCAAAGCGAAAGAGCGAAGAAAATCTAAAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14311:612..4301+

>mRNA_Ecto-sp13_S_contig14311.3345.1 ID=mRNA_Ecto-sp13_S_contig14311.3345.1|Name=mRNA_Ecto-sp13_S_contig14311.3345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14311:612..4301+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGGAAGACGCTCATCCGCCGGCCGAGCTCGCGGCGCACGCCGACA
GAGCGCGTCCCAGATCCAATGGCGACAAGCGTCCGCGACGAAAGTTGCGG
AGACGGGAGGGCTTGAAGTATCGGGGGGCAACGGCTATATCGACCCGCTC
AAGGCAGTCGACAAGCTCAAGAAACACGGGAAGGGGTTGTGGGGGATGCA
GGCTATCGTCGCGTTTGGAATGTCTGCGATCGCCGTCATTACTGACGTCA
GGTACGGCATCACGTACTGGTACACCAACACAGCGGGTGGAGGAAAGCTA
CGTGAGATGCAGTACGTCTGGGCGTTCTTCAATACCATGTGCGCTATGTG
CGGCGTTTGGGTATACCTGCTCTGGAACGAGGCCGTTGTTGGCGTCCACC
GAGATCGAAGAGTTTTCAGACAGAAGGTGCACATCTGGATGTCATACTTC
ACGTGGGCCTTCGGGTTATGGACTACGGCGGTTGTGTTCGTGAGCTTCCA
AACTTACTCTTTCTCCGCCAACTACCCGACGGATCTCACTTGCGCCTTCT
TTGGAGCCGTGCTGTGCTGCACGTTGTCCGACGTGTGGGCGCTGGGAAAG
CTCTGCTCGCTAGGGACTTACGCGGCAAGACTCGAAGAAGAGTGGCGGCT
TGCCCCTCACGAACCGACGGCGCCTCTTGCCATGGCCGATCCACTGCAAG
AACTTGAAGAAGCAATGCCAGATATGGACGAGAGGGACTACAGGAAAATA
GAGCGAGAGAGGAGGAGGAGCAGCCTAGCCAAAGCGAAAGAGCGAAGAAA
ATCTAAAGCC
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