mRNA_Ecto-sp13_S_contig14307.3343.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14307.3343.1
Unique NamemRNA_Ecto-sp13_S_contig14307.3343.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14307.3343.1 vs. uniprot
Match: A0A6H5KMP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.970e-19
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = -2 
Query:   66 MKSRRIGKVKLAAVLCTIAVHPKVTDSLGNLVSRCGTWAEPHACASGWLGGARR 227
            MKSRRIGKVKL+A+LCTIAVHPK TDS G+LVSRCGTWAEPHA +SG LG  RR
Sbjct:    1 MKSRRIGKVKLSALLCTIAVHPKGTDSFGHLVSRCGTWAEPHASSSGSLGDGRR 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14307.3343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMP5_9PHAE1.970e-1981.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14307contigEcto-sp13_S_contig14307:273..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size331
Hectar predicted targeting categorymitochondrion
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462765.3664634-CDS-Ecto-sp13_S_contig14307:272..6021681462765.3664634-CDS-Ecto-sp13_S_contig14307:272..602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14307 273..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14307.3343.1prot_Ecto-sp13_S_contig14307.3343.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14307 273..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14307.3343.1

>prot_Ecto-sp13_S_contig14307.3343.1 ID=prot_Ecto-sp13_S_contig14307.3343.1|Name=mRNA_Ecto-sp13_S_contig14307.3343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
THLRTRVAPVRRSSLLSTTHEDRRAPPSHPLAQACGSAHVPQRETRFPRL
SVTFGCTAIVQSTAASFTFPMRRDFILHLTLAGDPAGVTHEVYDASQRSM
ASSVQRGHPS
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mRNA from alignment at Ecto-sp13_S_contig14307:273..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14307.3343.1 ID=mRNA_Ecto-sp13_S_contig14307.3343.1|Name=mRNA_Ecto-sp13_S_contig14307.3343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14307:273..602+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCACCTTCGGACCCGTGTTGCCCCTGTCCGTCGCTCATCACTGCTGTC
CACCACGCACGAGGACCGCCGCGCACCTCCAAGCCATCCGCTGGCGCAAG
CGTGCGGCTCAGCCCATGTGCCACAGCGAGAGACGAGATTCCCGAGGCTG
TCGGTGACCTTTGGATGCACCGCGATCGTGCAGAGTACAGCTGCAAGTTT
TACCTTCCCGATGCGGCGGGATTTCATCCTTCACTTGACGCTAGCCGGTG
ACCCTGCTGGAGTGACACATGAAGTATATGATGCTTCCCAGCGTTCAATG
GCCTCGAGCGTACAGCGCGGCCATCCTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14307:273..602+

>mRNA_Ecto-sp13_S_contig14307.3343.1 ID=mRNA_Ecto-sp13_S_contig14307.3343.1|Name=mRNA_Ecto-sp13_S_contig14307.3343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14307:273..602+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCACCTTCGGACCCGTGTTGCCCCTGTCCGTCGCTCATCACTGCTGTC
CACCACGCACGAGGACCGCCGCGCACCTCCAAGCCATCCGCTGGCGCAAG
CGTGCGGCTCAGCCCATGTGCCACAGCGAGAGACGAGATTCCCGAGGCTG
TCGGTGACCTTTGGATGCACCGCGATCGTGCAGAGTACAGCTGCAAGTTT
TACCTTCCCGATGCGGCGGGATTTCATCCTTCACTTGACGCTAGCCGGTG
ACCCTGCTGGAGTGACACATGAAGTATATGATGCTTCCCAGCGTTCAATG
GCCTCGAGCGTACAGCGCGGCCATCCTAGC
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