mRNA_Ecto-sp13_S_contig14307.3344.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14307.3344.1
Unique NamemRNA_Ecto-sp13_S_contig14307.3344.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14307.3344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14307contigEcto-sp13_S_contig14307:837..4413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1131
Hectar predicted targeting categoryother localisation
Exons5
Cds size900
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14307.3344.1prot_Ecto-sp13_S_contig14307.3344.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14307 2483..4413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462765.2741694-UTR-Ecto-sp13_S_contig14307:836..10451681462765.2741694-UTR-Ecto-sp13_S_contig14307:836..1045Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14307 837..1045 +
1681462765.2828286-UTR-Ecto-sp13_S_contig14307:2461..24821681462765.2828286-UTR-Ecto-sp13_S_contig14307:2461..2482Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14307 2462..2482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462765.2907963-CDS-Ecto-sp13_S_contig14307:2482..28721681462765.2907963-CDS-Ecto-sp13_S_contig14307:2482..2872Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14307 2483..2872 +
1681462765.2989872-CDS-Ecto-sp13_S_contig14307:3383..35021681462765.2989872-CDS-Ecto-sp13_S_contig14307:3383..3502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14307 3384..3502 +
1681462765.3112013-CDS-Ecto-sp13_S_contig14307:3682..39961681462765.3112013-CDS-Ecto-sp13_S_contig14307:3682..3996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14307 3683..3996 +
1681462765.323179-CDS-Ecto-sp13_S_contig14307:4336..44131681462765.323179-CDS-Ecto-sp13_S_contig14307:4336..4413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14307 4337..4413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14307.3344.1

>prot_Ecto-sp13_S_contig14307.3344.1 ID=prot_Ecto-sp13_S_contig14307.3344.1|Name=mRNA_Ecto-sp13_S_contig14307.3344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
MEESKSSKRERLRQEDEVDHGQSRLGGAATAASFRFSRDTHIESSDGEWI
PMSEIHKENERVCQMSRGRTPRDVYEHGFDDDDDDDKDPKWIVDMEKDAD
ELFASVVTTLDITLEEAKHVLHLNIYYATSRKDLSGLEGVVLRENPVERR
RLKNVRVMKDFMRIKQTKKGHIRSQLVAAKFLGLYTKLVLLQEAGGATGG
YRLIRTIEKKWDKPCSTAGMIAICAAAAADYVLERKELEEGLRRKARGST
TTVSALVVGLSEMGYSNGHLLCLRGEQNDFAKERAKFPYGCPGDSQETGD
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mRNA from alignment at Ecto-sp13_S_contig14307:837..4413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14307.3344.1 ID=mRNA_Ecto-sp13_S_contig14307.3344.1|Name=mRNA_Ecto-sp13_S_contig14307.3344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3577bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14307:837..4413+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTCGGGGCAGTCTAATTTGGAGCCGGACCGGAGCACGGAGCATAGAGAG
TTCGGAGAGCAATAACGTCTCTACTCTCCTATTGTCGAGGCAAAATCGGA
CACAAAAACCAGATCTCTGGGATTAGCATCATTGAGAGGTGGCATCGCGA
AAGAAGGAGAGGTCTCGAAACATCAGATACATCACCACCGCGGGGATCCA
TTCCTCTTGGTAAGTAGTGAGTATTTCATGTGTATGCATATAGTTTGCCC
ATGATGGCAATCATCAACGTGTCAATGGGCGCTGGATCATGCGCACGCTG
CAGCTGCATCAGGTTATGCCTGTTCAGCGTGTTTTTCAATGTGATCGTTG
ATCGATGTACATTTTTTTTGGCGGACGAACCGATCTTGGGTTTTTTACTC
CTGTTTCAAAATTCAATAACGATACTGTACTTCAAATGTCGACCTCAATA
GAGCATGTACAGCGCCTTGGTGATGTAGTGGTGTCCTCGTAAACCACTAG
TCGCAGAAATCGTGGGTCCGAATTCCCGTGGGGTACAAAATGTTCGAAAT
TTGCGGGTGAAAGCGAATTATAGTCAACAAGCTCTTCTAGTGAGCACCAA
ACCTTTGACGTTTGTTAGCACCATTGACGAGGGAATGGGACAGCTGGACC
CTTCTCGCGATAAAAATTAAATTTAGCGCGCACCGCACGAGGAAGGTGGG
GCATGGAAAGAAATAAAAAGGAGGAAAAAGCCTTGGTATTTACCCCCTCC
TGTGTGACCCCCGATGGTTGTAGTTGTACGAAGAAACACACTGAAAGGTG
TAGTATTCCATATACACTGAAAAAACGTAGTAAGCGTCTCATCACGAACA
GTGAGAGGGGACTGTCGCCACAGTAAGGACGACTACACACAACAAATGTC
ACTGCATGGATACAATCTCACACGAGCCGCAGAACACGTAAATAAAACCA
GTTAGTGGACGCTGGGCAAAAAGTCCGTTGGTCATTTGTCGTACGCACGC
ACGCAGCAGCGGGTGTGGATTGTTTGTTTTTCTGCATGGGCAAAAAATCC
GTTGGTCGCTTGTCGTACGCACGCACGCAGCAGCGGGTATGGATTGTTTG
TTCTTCTGCATGGGCAAAAAATCCGTTGGTCGTTTGTTGTACGCACGCAC
GCAGCAGCGGGTGTGGATTGTTTGTTTTTTTCTGCACGAGCGTATCTTTC
TGTAGTCTAAATCTCTCTCAAGCTTCACGAAAAGTGAAGAAAGGCTCTCC
AGGCTGCAGACTCAAATTTAGGTTGTCCGTAATGTTGCACACTCATGTGT
ACCAAATATGTCAATTCCGTCAGGTTTTCACGTAGTTCGTAAAAACTGCG
TGGAAAATTGTATCCAGCCATTTTCGAGTTCGTCTGCGCTGGTTCAATCT
GCAGCTGCTCTCAAACCAACATGCCCTGGTTTCGAAATAGTAATAATATG
TTGCATCATAGAGCAGCATGCAACTCTATGAAACGGCCGACGCGTCGGGT
CCCTGGAGAGGTTCGATGCGCTTCCCTTTGCTCTTGGTGCAACTCTATCG
ACCTTTTCACGCTACACTCAAGCTACACCTAGAAATCGCCTTATGAGAAT
TGCACGCCCCCCGCATCGCCTTCAGCGTTCACGACATTGAGCAGCTATGG
AGGAGTCGAAGTCTTCGAAACGAGAACGGCTGCGACAAGAGGACGAGGTG
GACCACGGCCAGAGCCGACTTGGCGGTGCTGCCACTGCTGCTTCGTTTCG
TTTCAGCCGTGACACCCATATTGAATCGTCTGACGGTGAATGGATCCCGA
TGAGTGAGATCCACAAGGAGAATGAACGGGTCTGCCAGATGAGCAGGGGC
AGGACCCCGAGGGATGTCTATGAGCATGGCTTTGACGACGACGACGACGA
TGACAAAGACCCGAAGTGGATCGTGGACATGGAGAAAGATGCAGACGAGT
TGTTCGCCAGCGTGGTGACCACCCTCGACATCACCCTCGAAGAGGCGAAG
CATGTGCTCCATCTCAATATCTACTACGCCACGAGCGTGAGTCTCACTCG
CGGTGCACACATCACTCTATCCTTGCCGGCTTTATCGTTCTTTTCGCGTT
CCTCGTGGGTACCCTTTCGATTCCAGTCTGCCCTTTCCTTCCTCCGGTGA
TGTTCTGCTCTCGTTGTTTGCACACCTTGTGACCCAGGGTGTGTGTGCTA
GTGTTCGTTTGTTTCCTTTTGCGACTGCCTGGTGCAGATTGAACCTGATA
TCTTTCTGCTTCACTCTTGAATGTCCAACAGTATGAAGAGAGAAAGAGAG
GCGGCTGCCGGCCGTAACGAAAGGATGCGTTGCTCTCTTTCTCTTTCTTT
CTCCCTCGCTCTCTCTCTCTCCTGCCCAGTCTTGCTACACCGCTTCATGA
CCAGTTGATGTCGACACGCACGCACCGGCGGGATGCTCTTTCGATTGCAC
GTGGGCTGTCTTCCCACATGACTTCGTCCGTGTCGCTCCTAACCGATATC
GCCCTTTCCCTTGTGTGCCCCATCTTACATCATGGGTGTTCCGTCAGCGC
AAGGATCTGTCGGGCCTGGAAGGAGTAGTGCTTCGCGAAAATCCTGTGGA
GCGGAGGCGGCTTAAGAATGTGCGAGTGATGAAGGACTTCATGCGCATCA
AGCAGACGAAGAAGGGGTAAGCGGGGGAGGTTTTAGAATGTCCCTTTCGT
TACGCCGAACCTACTGCTGTACGAGGCTGTTTCGTGGTGTTAGTTAGATC
CCCACCCAGGAAGCCGGGGGCTTTCTTTGTCTTTGGGCAACTCAGAGCGC
GGTTTTGGCGGGAGCCTGAATTTTTGCGACTTTTTGTCTTTCACAGGCAC
ATCCGCTCTCAGCTGGTGGCCGCCAAGTTCTTGGGGCTGTACACGAAGCT
CGTGCTCTTGCAGGAGGCGGGTGGCGCCACGGGCGGATACCGTCTCATCC
GTACCATTGAGAAAAAGTGGGACAAGCCATGCAGCACCGCCGGCATGATT
GCTATCTGCGCGGCGGCGGCGGCGGATTATGTTTTGGAGCGGAAGGAGCT
CGAAGAGGGTCTCCGGCGCAAGGCCAGGGGATCGACGACTACTGTCTCTG
CGTTGGTCGTAGGCTTGTCGGAAATGGGCTACAGCAACGGGCATCTATTG
TGCCTGCGAGGTGACGTTCTTAGCTTCGCCCAATGTGTCGTCTTGGTCTA
CGGCGTTGCAATAGAGCCCCAAAGTGGGTCCGTTCTTGAATCTTTCTTGG
GTGTATACTTGCTGGCACCTACATAGCCGACCCGAGAATATGATGAGTGA
CCGTGATTGTCGCTGGCAAAGCTGGTTTTGCCGAGCAGCCGCCGACAGTC
AAGTAAGCTTTTTCTCCCAACGGATCAGGCCAAACCACCGTTTGAAGGCA
CGGAACCCAAAACGGGTTAACACTTCCAATGTCACAAGAGGGTCAACCCT
CGCCGTCGCTATCATTATCCCACCTTTCGTGTCAACGAATTGAACTGTAG
GCGAGCAGAACGACTTTGCGAAGGAGCGCGCCAAGTTTCCTTACGGATGT
CCCGGCGATAGCCAAGAAACTGGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14307:837..4413+

>mRNA_Ecto-sp13_S_contig14307.3344.1 ID=mRNA_Ecto-sp13_S_contig14307.3344.1|Name=mRNA_Ecto-sp13_S_contig14307.3344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14307:837..4413+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGTCGAAGTCTTCGAAACGAGAACGGCTGCGACAAGAGGACGA
GGTGGACCACGGCCAGAGCCGACTTGGCGGTGCTGCCACTGCTGCTTCGT
TTCGTTTCAGCCGTGACACCCATATTGAATCGTCTGACGGTGAATGGATC
CCGATGAGTGAGATCCACAAGGAGAATGAACGGGTCTGCCAGATGAGCAG
GGGCAGGACCCCGAGGGATGTCTATGAGCATGGCTTTGACGACGACGACG
ACGATGACAAAGACCCGAAGTGGATCGTGGACATGGAGAAAGATGCAGAC
GAGTTGTTCGCCAGCGTGGTGACCACCCTCGACATCACCCTCGAAGAGGC
GAAGCATGTGCTCCATCTCAATATCTACTACGCCACGAGCCGCAAGGATC
TGTCGGGCCTGGAAGGAGTAGTGCTTCGCGAAAATCCTGTGGAGCGGAGG
CGGCTTAAGAATGTGCGAGTGATGAAGGACTTCATGCGCATCAAGCAGAC
GAAGAAGGGGCACATCCGCTCTCAGCTGGTGGCCGCCAAGTTCTTGGGGC
TGTACACGAAGCTCGTGCTCTTGCAGGAGGCGGGTGGCGCCACGGGCGGA
TACCGTCTCATCCGTACCATTGAGAAAAAGTGGGACAAGCCATGCAGCAC
CGCCGGCATGATTGCTATCTGCGCGGCGGCGGCGGCGGATTATGTTTTGG
AGCGGAAGGAGCTCGAAGAGGGTCTCCGGCGCAAGGCCAGGGGATCGACG
ACTACTGTCTCTGCGTTGGTCGTAGGCTTGTCGGAAATGGGCTACAGCAA
CGGGCATCTATTGTGCCTGCGAGGCGAGCAGAACGACTTTGCGAAGGAGC
GCGCCAAGTTTCCTTACGGATGTCCCGGCGATAGCCAAGAAACTGGCGAC
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