mRNA_Ecto-sp13_S_contig14304.3341.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14304.3341.1
Unique NamemRNA_Ecto-sp13_S_contig14304.3341.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14304.3341.1 vs. uniprot
Match: D7FUB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 7.660e-16
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 CNAITPSAEGRGVGLLRHHRSPPYGPVAASTHQA 102
            CNAITPSAEGRG GLLRH RSPPYGPVAASTHQA
Sbjct:    4 CNAITPSAEGRGAGLLRHRRSPPYGPVAASTHQA 37
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14304.3341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUB4_ECTSI7.660e-1694.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14304contigEcto-sp13_S_contig14304:2895..2999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size105
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462765.145347-CDS-Ecto-sp13_S_contig14304:2894..29991681462765.145347-CDS-Ecto-sp13_S_contig14304:2894..2999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14304 2895..2999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14304.3341.1prot_Ecto-sp13_S_contig14304.3341.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14304 2895..2999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14304.3341.1

>prot_Ecto-sp13_S_contig14304.3341.1 ID=prot_Ecto-sp13_S_contig14304.3341.1|Name=mRNA_Ecto-sp13_S_contig14304.3341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
CNAITPSAEGRGVGLLRHHRSPPYGPVAASTHQA*
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mRNA from alignment at Ecto-sp13_S_contig14304:2895..2999-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14304.3341.1 ID=mRNA_Ecto-sp13_S_contig14304.3341.1|Name=mRNA_Ecto-sp13_S_contig14304.3341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14304:2895..2999- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAACGCGATTACACCATCGGCGGAAGGACGTGGGGTCGGTCTGCTTCG
GCATCACCGGTCGCCCCCCTACGGGCCGGTGGCAGCGTCGACACATCAGG
CATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14304:2895..2999-

>mRNA_Ecto-sp13_S_contig14304.3341.1 ID=mRNA_Ecto-sp13_S_contig14304.3341.1|Name=mRNA_Ecto-sp13_S_contig14304.3341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14304:2895..2999- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAACGCGATTACACCATCGGCGGAAGGACGTGGGGTCGGTCTGCTTCG
GCATCACCGGTCGCCCCCCTACGGGCCGGTGGCAGCGTCGACACATCAGG
CATGA
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