prot_Ecto-sp13_S_contig14299.3334.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14299.3334.1
Unique Nameprot_Ecto-sp13_S_contig14299.3334.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length342
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14299.3334.1 vs. uniprot
Match: D7FXW0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW0_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.120e-59
Identity = 167/196 (85.20%), Postives = 169/196 (86.22%), Query Frame = 0 
Query:    1 MSALSPRGAAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWKRAEQMLVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLLATMKASGLSPDEYTYAAMMRASGIDGSWEESWSM 196
            MSALSPRG AGAD                         RAYGDKGDW+RAEQMLVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDL+ATMKASGL PDEYTYAAMMRASGIDGSWEESWSM
Sbjct:  382 MSALSPRGLAGADXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWERAEQMLVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSM 577
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14299.3334.1 vs. uniprot
Match: A0A6H5KVR3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR3_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 8.140e-57
Identity = 161/196 (82.14%), Postives = 165/196 (84.18%), Query Frame = 0 
Query:    1 MSALSPRGAAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWKRAEQMLVGMQKEHXXXXXXXXXXXXXXXXXXXXXXXXXLETLDEMRECGLSADPVXXXXXXXXXXXXXXXXXXXXXXSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLLATMKASGLSPDEYTYAAMMRASGIDGSWEESWSM 196
            MSALSPRGAAGA                          RAYGDKGDWKRAEQMLVGMQK+H XXXXXXXXXXXXXXXXXXXXXXXXLETLD+MRECGLSADPV XXXXXXXXXXXXXXXXXXXXX KLVSEKPP RSLMWGYNAAISALGKAKQMEGIKDLLATMKASGL PDEYTYAAMMRASGI+GSWEESW+M
Sbjct:  451 MSALSPRGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXRAYGDKGDWKRAEQMLVGMQKDHGXXXXXXXXXXXXXXXXXXXXXXXXLETLDKMRECGLSADPVVXXXXXXXXXXXXXXXXXXXXXXKLVSEKPPKRSLMWGYNAAISALGKAKQMEGIKDLLATMKASGLKPDEYTYAAMMRASGIEGSWEESWTM 646
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14299.3334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXW0_ECTSI1.120e-5985.20PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVR3_9PHAE8.140e-5782.14PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..140
e-value: 3.5E-33
score: 117.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 201..271
e-value: 7.9E-20
score: 73.1
coord: 141..200
e-value: 1.7E-9
score: 39.4
coord: 272..340
e-value: 1.2E-9
score: 40.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 281..304
e-value: 0.14
score: 12.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 142..174
e-value: 2.3E-5
score: 22.3
coord: 281..314
e-value: 4.7E-4
score: 18.1
coord: 210..244
e-value: 2.0E-8
score: 31.9
coord: 32..66
e-value: 3.4E-5
score: 21.7
coord: 175..208
e-value: 2.0E-5
score: 22.5
coord: 68..101
e-value: 1.8E-6
score: 25.7
coord: 246..279
e-value: 2.4E-8
score: 31.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 142..183
e-value: 7.7E-9
score: 35.6
coord: 207..254
e-value: 3.9E-14
score: 52.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 66..100
score: 10.709
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 101..135
score: 8.265
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 30..65
score: 9.964
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 173..207
score: 11.016
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 208..242
score: 11.619
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 243..277
score: 12.156
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..29
score: 5.755
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 278..312
score: 8.517
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 138..172
score: 8.331
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 10..129
e-value: 9.0E-8
score: 31.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 49..195
coord: 188..336

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14299contigEcto-sp13_S_contig14299:674..3988 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14299.3334.1mRNA_Ecto-sp13_S_contig14299.3334.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14299 668..3988 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14299.3334.1 ID=prot_Ecto-sp13_S_contig14299.3334.1|Name=mRNA_Ecto-sp13_S_contig14299.3334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
MSALSPRGAAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWKRA
EQMLVGMQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDEMRECGLSA
DPVVYTAAIGACEKFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALG
KAKQMEGIKDLLATMKASGLSPDEYTYAAMMRASGIDGSWEESWSMLLEM
EQAGIRPNRVVYNTLIASLLKGEQIEKADEILNRMREGGVPPDVTTYTTI
MSGCKRESDWRRAEALLSEMESFGIKPNCRTLTAVLKVYGDAGEVERALA
LFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLEVTPTVEA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long