prot_Ecto-sp13_S_contig14298.3333.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14298.3333.1
Unique Nameprot_Ecto-sp13_S_contig14298.3333.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length641
Homology
BLAST of mRNA_Ecto-sp13_S_contig14298.3333.1 vs. uniprot
Match: A0A6H5JHA1_9PHAE (RB_A domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE)

HSP 1 Score: 747 bits (1929), Expect = 4.630e-252
Identity = 484/650 (74.46%), Postives = 499/650 (76.77%), Query Frame = 0
Query:    1 LALYDDDQPAAEAEDARPPRTTTGADGRGGGTCRLGDLLRQCNTGVKGFMEHLTLVAGRLPGPLSARLDGDLRVMKEGIVVTKMLYGKYRQIWNERDSLFPPAIFGPSSAAFGNDGDSNNMTNGVLPSQAAESXXXXXXXXXXXXXXXXXXXXXXXXAGFPLPLPPSDPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNLVLAALGAVVWNSSXXXXXXXXPRGCYSRRHSSLLSEGTGASGRLEGGREVVSSPAAGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----TYGGEAALLAKLSASGRCPAKEVRAMSAHVVEVIEALLQEGIVVSHHAPAPATSSPCIGGEHGTAVATAAAAAA-DVSLMDTTAAESSAAPVDVPRHQQLASRAERVAGVFHPSVAGENVDRLDACYWARVSQRGGXXXXXHRGVVLDEAFVLTPDLRDTVGTPRYGGSTPRRSALTPSVSRTSRQLFQDYQRVSNATAVEPLERGEGEAQHCLALSFGPPEDNNGPSXXXXXXXXXXXXXXXA----VQAGSPATEGQVRTAVAXXXXXXXAGSFPESILPPGGRQAXXXXXXXXXVGGGGFGILRNPLASRSSRLGGATGMAGIAVGGGGGARGGPPETPVMAVM 640
            LALYDDD+P AE EDA PP TT GADGRGGGTCRLGDLLRQ                                    G V+            N+RDSLFPPAI GPSSAA  NDGDSNNMTNG LPSQAAE+                        AGFPLPLPPSDPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNLVLAALGAVVWNSS XXXXX  PRGCYSRR SSLL++G+GASG LEGGREV S+PAA SE             XXXXXXXXXXXXXXXXXXXXXXXX     TYGGEAALLAKLSASGRCPA+EVRAMS HVVEVIEALLQEGIVVSH APAPATSSPC GGEHGT +ATAAAAAA DVSLMDT A E++AAPVDVPRHQQLASRAERVAGVFHPSVAGENVDRLDACYWARVSQRG      HRGVVLDEAFVLTPDLRDTVGTP YGGSTPRRSALTPSVSRTSRQLFQDYQRVSNATAVEP ERGEGEAQHCLALSFGPPED+NGPS  XXXXXXXXXXXXX     VQAGSPATE QVR    XXXXXX AG FPESILPPG RQA         VGGGGFGILR+PLASRSSRLGGA GMAGIAVGG   ARGGPPETPVMA +
Sbjct:   72 LALYDDDEPTAETEDALPPTTTMGADGRGGGTCRLGDLLRQ------------------------------------GWVL------------NQRDSLFPPAIVGPSSAALSNDGDSNNMTNGALPSQAAENKNKSGGADETSDDHDISSAATAA-AGFPLPLPPSDPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNLVLAALGAVVWNSSSXXXXXSFPRGCYSRRRSSLLTDGSGASGGLEGGREVASAPAADSEPTTAVAAQRAGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYGGEAALLAKLSASGRCPAEEVRAMSTHVVEVIEALLQEGIVVSHRAPAPATSSPCTGGEHGTTIATAAAAAAVDVSLMDTAADENAAAPVDVPRHQQLASRAERVAGVFHPSVAGENVDRLDACYWARVSQRGRGGGGGHRGVVLDEAFVLTPDLRDTVGTPHYGGSTPRRSALTPSVSRTSRQLFQDYQRVSNATAVEPQERGEGEAQHCLALSFGPPEDSNGPSASXXXXXXXXXXXXXXXXXXVQAGSPATESQVRMXXXXXXXXXAAGRFPESILPPGDRQAGGGSPRSGGVGGGGFGILRDPLASRSSRLGGAAGMAGIAVGGXXXARGGPPETPVMATV 672          
BLAST of mRNA_Ecto-sp13_S_contig14298.3333.1 vs. uniprot
Match: D7G8E5_ECTSI (Putative retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI)

HSP 1 Score: 701 bits (1809), Expect = 1.140e-236
Identity = 447/592 (75.51%), Postives = 455/592 (76.86%), Query Frame = 0
Query:    1 LALYDDDQPAAEAEDARPPRTTTGADGRGGGTCRLGDLLRQCNTGVKGFMEHLTLVAGRLPGPLSARLDGDLRVMKEGIVVTKMLYGKYRQIWNERDSLFPPAIFGPSSAAFGNDGDSNNMTNGVLPSQAAESXXXXXXXXXXXXXXXXXXXXXXXXAGFPLPLPPSDPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNLVLAALGAVVWNSSXXXXXXXX---------PRGCYSRRHSSLLSEGTGASGRLEGGREVVSSPAAGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TYGGEAALLAKLSASGRCPAKEVRAMSAHVVEVIEALLQEGIVVSHHAPAPATSSPCIGGEHGTAVATAAAAAADVSLMDTTAAESSAAPVDVPRHQQLASRAERVAGVFHPSVAGENVDRLDACYWARVSQRGGXXXXXHRGVVLDEAFVLTPDLRDTVGTPRYGGSTPRRSALTPSVSRTSRQLFQDYQRVSNATAVEPLERGEGEAQHCLALSFGPPEDNNGPSXXXXXXXXXXXXXXXAVQAGSPATEGQVRTAVAXXXXXXXAGSFPESILPPGGRQ 580
            LALYDDD+PAAEAEDA+P  TTTGADGRGGGTCRLGDLLRQCNTGVKGFMEHLTLVAGRLPGPLSARLDGDLRVMKEGIVVTKMLYGKYRQIWNERDSLFPPAIFGPSSAAFGNDGDSNNMTNGVLPSQAAE+    XXXXXX              AGFPLPLPPSDPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNLVLAALGAVVWNS XXXXXXXX         PRGCYSRR SSLL++G+GASG LEGGRE  S+PAA SE                       XXXXXXXXXXXXXX   TYGGEAALLAKLSASGRCPAKEVRAMSAHVVEVIEALLQEGIVVSH                                                  QQLASRAERVAGVFHPSVAGENVDRLDACYWARVSQRGGXXXXXHRGVVLDEAFVLTPDLRDTVGTPRYGGSTPRRSALTPSVSRTSRQLFQDYQRVS A AVEP ERGEGEAQHCLALSFGPPED+NGPS XXXXXXXXXXXXXX                     XXXX GSFPESILPPGGRQ
Sbjct:   25 LALYDDDEPAAEAEDAQPRATTTGADGRGGGTCRLGDLLRQCNTGVKGFMEHLTLVAGRLPGPLSARLDGDLRVMKEGIVVTKMLYGKYRQIWNERDSLFPPAIFGPSSAAFGNDGDSNNMTNGVLPSQAAENNKGGXXXXXXTSDDHDINSAAVAAAGFPLPLPPSDPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNLVLAALGAVVWNSXXXXXXXXXXXXXXXXXXPRGCYSRRRSSLLADGSGASGGLEGGREGASAPAADSEPATAVAAPRAGSEGGEAVESETAXXXXXXXXXXXXXXXXXTYGGEAALLAKLSASGRCPAKEVRAMSAHVVEVIEALLQEGIVVSH--------------------------------------------------QQLASRAERVAGVFHPSVAGENVDRLDACYWARVSQRGGXXXXXHRGVVLDEAFVLTPDLRDTVGTPRYGGSTPRRSALTPSVSRTSRQLFQDYQRVSTAAAVEPQERGEGEAQHCLALSFGPPEDSNGPSAXXXXXXXXXXXXXXXXXX-----------------XXXXXGSFPESILPPGGRQ 549          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14298.3333.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHA1_9PHAE4.630e-25274.46RB_A domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7G8E5_ECTSI1.140e-23675.51Putative retinoblastoma n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024599Retinoblastoma-associated protein, N-terminalPFAMPF11934DUF3452coord: 27..213
e-value: 9.9E-30
score: 102.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14298contigEcto-sp13_S_contig14298:359..4452 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14298.3333.1mRNA_Ecto-sp13_S_contig14298.3333.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14298 359..4452 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14298.3333.1 ID=prot_Ecto-sp13_S_contig14298.3333.1|Name=mRNA_Ecto-sp13_S_contig14298.3333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=641bp
LALYDDDQPAAEAEDARPPRTTTGADGRGGGTCRLGDLLRQCNTGVKGFM
EHLTLVAGRLPGPLSARLDGDLRVMKEGIVVTKMLYGKYRQIWNERDSLF
PPAIFGPSSAAFGNDGDSNNMTNGVLPSQAAESNNKGGGGGGDTSDDHDI
SSAAAAAAGFPLPLPPSDPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCL
NLVLAALGAVVWNSSSSSSSSSSPRGCYSRRHSSLLSEGTGASGRLEGGR
EVVSSPAAGSEPTTAVAAQRAGNEGGEAVESQTTATGGGGGGGDGGGGTY
GGEAALLAKLSASGRCPAKEVRAMSAHVVEVIEALLQEGIVVSHHAPAPA
TSSPCIGGEHGTAVATAAAAAADVSLMDTTAAESSAAPVDVPRHQQLASR
AERVAGVFHPSVAGENVDRLDACYWARVSQRGGGGGGGHRGVVLDEAFVL
TPDLRDTVGTPRYGGSTPRRSALTPSVSRTSRQLFQDYQRVSNATAVEPL
ERGEGEAQHCLALSFGPPEDNNGPSASSAAAAAAAAAAVAAVQAGSPATE
GQVRTAVAAAAVATAAGSFPESILPPGGRQAGGGSPRSGGVGGGGFGILR
NPLASRSSRLGGATGMAGIAVGGGGGARGGPPETPVMAVME
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024599RB_N