mRNA_Ecto-sp13_S_contig14295.3332.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 433 bits (1113), Expect = 1.730e-145 Identity = 209/232 (90.09%), Postives = 216/232 (93.10%), Query Frame = 1
Query: 1 VCSRSLSVGVSVARTYTVEWTGTGDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAGAAGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEAFEIVNDSTEMSMR 696
V S + + V RTYTVEWTGT DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPM GTSSGYKV+VTDSNDESSMGCSGDFTLVASTDAPAAG GYSLTVTSPSDGDTAMAG VYTVEWDYENG GSSTDRFA+DLY++GTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSE FEIVND T+MSMR
Sbjct: 22 VVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSMR 253
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 376 bits (966), Expect = 2.260e-123 Identity = 183/234 (78.21%), Postives = 198/234 (84.62%), Query Frame = 1
Query: 1 VCSRSLSVGVSVARTYTVEWTGTGDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAGAAGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEAFEI-VNDSTEMSMRF 699
V S + V R YTVEWTGT RFEIDLYYC SFCM+D CGDWVTALCPYGADGCPD+ GDYDI+MPEPM GTSSGYKVMV ++ DES MGCS DFTL+AS DAP AG GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLY G GTGDCGTYV TLCD+PSIGCPDSQGDYDVEIPSDTPAGMYS+RVGVF D+MM+DCS+ FE+ +D +SMRF
Sbjct: 22 VVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVG-GTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE) HSP 1 Score: 370 bits (949), Expect = 9.600e-122 Identity = 177/193 (91.71%), Postives = 186/193 (96.37%), Query Frame = 1
Query: 118 MEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAGAAGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEAFEIVNDSTEMSMR 696
MED+CGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYK+MVTDSNDESSMGCSGDFTLVASTDAPAAG GYSLTV SPSDGD AMAGEVYTVEWDY NG GSS DRFA+DLYT+GTGTGDCGTYVATLCDKP+IGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSD++MFDCSEAFEIVNDST++SMR
Sbjct: 1 MEDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIVNDSTDLSMR 193
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 336 bits (862), Expect = 7.970e-108 Identity = 163/218 (74.77%), Postives = 186/218 (85.32%), Query Frame = 1
Query: 46 YTVEWTGTGDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAGAAGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEAFEIVNDSTEMSMRF 699
YTVEWTG R++IDLYYCGS CMEDECGDWVTALCPYG DGCPDTQGDYD+VMPEPMDGTSSGYKVMVTDS+DES GCSGDFTL+AST+AP A G ++VTSPSDGDTAMAG YTVE+DY+NG GSS +RFA+DLY+ G G+GDCGTYV T+CDKPSIGC DSQGDYDV IPS T +GMYS+RVGVF DD ++ CS++FEIV + MS+RF
Sbjct: 37 YTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSG-GSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGES-MSVRF 252
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 297 bits (761), Expect = 1.940e-92 Identity = 148/217 (68.20%), Postives = 175/217 (80.65%), Query Frame = 1
Query: 28 VSVARTYTVEWTGTG-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTS-SGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAG-AAGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEAFEIV 669
V +R YTVEWTGTG ++R+EIDLYYCGS CMEDECGDWVTALCPYG DGCPD +GDYDIVMPEPM GTS SGYKV V D +D+ S CS +F L+A +AP+AG A G +TVTSPS GD+A AGE YTVE+DY+NG GSS RFA+DLY+ TG+GDCGT++ TLCDKP+IGC DS GDYDVEIP D AGMY++RVG F DD ++ CS+ FEI+
Sbjct: 19 VVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYS-ATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 296 bits (759), Expect = 2.160e-92 Identity = 150/225 (66.67%), Postives = 176/225 (78.22%), Query Frame = 1
Query: 37 ARTYTVEWTGTGDS-RFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTS-SGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAG-AAGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEAFEIVN-DSTEMSMRF 699
+R YTVEW+GTG + RFEIDLYYC S CMEDECG+WVTALCPYG DGCPD +GDYDIVMPEPM GTS SGYKV V D +DE S CS +F L+A DAP+A A G +TVTSPS GD+A AGE YTVE+DY+NG GSS RFA+DLY TG+GDCGT++ TLCDKP+IGC DS GDYDVEIP D AGMY++RVG F D+ ++ CS+ FEI+ D + MS RF
Sbjct: 35 SRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYA-ATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 294 bits (753), Expect = 1.570e-91 Identity = 151/236 (63.98%), Postives = 175/236 (74.15%), Query Frame = 1
Query: 1 VCSRSLSVGVSVARTYTVEWTGTGDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTS-SGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAGA-AGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEAFEIVN-DSTEMSMRF 699
V + S + V RTYTVEWTG RFEIDLY+CGS CMED CGDWVTALCPYG +GCPD +GDYDIVMPEPM G S SGYKV V D +DE SM CS F L+AS DAP AG+ +GY LTVTSP++GD+A AGE YTVE+DY+NG GS DRF++DLY G GDCGTYV ++CDKPSIGC DS GDYDVEIP+DT AG Y +RVG F D+ ++ CS F I+ D MS F
Sbjct: 22 VVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYM-ADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 287 bits (735), Expect = 6.640e-89 Identity = 141/224 (62.95%), Postives = 164/224 (73.21%), Query Frame = 1
Query: 28 VSVARTYTVEWTGTGDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAGAAGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEAFEIVNDSTEMSMRF 699
+ A + TVEWTGT RF+IDLYYCGS CMEDECGDWVTALCPYG DGCPDTQGDYD+VMPEPMDGTSSGYKVMVTDS+DES MGCSG+FTLVAS +D++NGFGSS +RF++DLY G G+GDCGTYV ++CDK SIGC DSQGDYDV IPSDT +GMYS+RVGVF D +F CS++FEI+ + MS+RF
Sbjct: 31 IVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSG-GSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESSMSVRF 253
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 279 bits (713), Expect = 1.910e-85 Identity = 144/225 (64.00%), Postives = 166/225 (73.78%), Query Frame = 1
Query: 1 VCSRSLSVGVSVARTYTVEWTGTG-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTS-SGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAGAA-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEAFEI 666
V + S + V RTYTVEWTGT D+RFEIDLYYCGS CMED+CGDWVTALCPYG DGCPD +GDYDIVMPEPM GTS SGYKV V D +DE CS +F L+AS++AP+ G G +L VTSP+ GD A YTVE+DY+NG GSS DRFA+DLY G GDCGTYV ++CDKP+IGC DS GDYDVEIP DT AG Y +RV F DD ++ CS F I
Sbjct: 22 VSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLY-RADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 234 bits (597), Expect = 9.830e-69 Identity = 126/212 (59.43%), Postives = 150/212 (70.75%), Query Frame = 1
Query: 1 VCSRSLSVGVSVARTYTVEWTGTG-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTS-SGYKVMVTDSNDESSMGCSGDFTLVASTDAPAAGAA-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYTHGTGTGDCGTYVATLCDKPSIGCPDS----QGDYDVEIPSDTPAGMYSVRV 615
V + S + V RTYTVEWTGT D+RFEIDLYYCGS CMED+CGDWVTALCPYG DGCPD +GDYDIVMPEPM GTS SGYKV V D +DE CS +F L+AS++AP+ G G +L VTSP+ GD A YTVE+DY+NG GS DRFA+DLY G GDCGTYV ++CDKP+IGC DS +G + V+ G +S+ V
Sbjct: 23 VSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLY-RADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLV 233 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14295.3332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14295.3332.1 >prot_Ecto-sp13_S_contig14295.3332.1 ID=prot_Ecto-sp13_S_contig14295.3332.1|Name=mRNA_Ecto-sp13_S_contig14295.3332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp MEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTSSGYKVMVTDSNback to top mRNA from alignment at Ecto-sp13_S_contig14295:347..4029- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14295.3332.1 ID=mRNA_Ecto-sp13_S_contig14295.3332.1|Name=mRNA_Ecto-sp13_S_contig14295.3332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3683bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14295:347..4029- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14295:347..4029- >mRNA_Ecto-sp13_S_contig14295.3332.1 ID=mRNA_Ecto-sp13_S_contig14295.3332.1|Name=mRNA_Ecto-sp13_S_contig14295.3332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14295:347..4029- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |