mRNA_Ecto-sp13_S_contig14294.3331.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14294.3331.1
Unique NamemRNA_Ecto-sp13_S_contig14294.3331.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14294.3331.1 vs. uniprot
Match: D8LMY3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY3_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.430e-48
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    1 QEMTEKLSKLEGLAAGGDDGHTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHLTRALEAGASSSADPGSA 279
            +EMTE+LSKLEGLA GG+DGHTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHL+RALEAGASSSADP SA
Sbjct:    6 KEMTEQLSKLEGLA-GGNDGHTLLQQHQKEMLAKLREIRAAMATETGELDSVKEANAEVAKLREVIKRRDYRILHLSRALEAGASSSADPTSA 97
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BLAST of mRNA_Ecto-sp13_S_contig14294.3331.1 vs. uniprot
Match: A0A7S2GHJ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHJ2_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 5.300e-5
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:   16 KLSKLEGLAAGGDDGHT--LLQQHQKEMLAKLREIRAAMATETGELDSVK----EANAEVAKLREVIKRRDYRILHLTRALEAGASSS 261
            +L KLE  A G  D  T   L+ +QK++L +L+EI+A M  + G+++ VK    +A AE  KL   +K+++YRI HL + L    S S
Sbjct:   25 RLGKLE--AGGSSDTATDVALENYQKQVLLRLKEIKAKMNEDGGDIEDVKLQRDQALAENEKLAARVKKQEYRIKHLIKCLNEEESKS 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14294.3331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMY3_ECTSI1.430e-4893.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2GHJ2_9STRA5.300e-538.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14294contigEcto-sp13_S_contig14294:3408..4010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size282
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004110.1
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462764.1980667-CDS-Ecto-sp13_S_contig14294:3407..36461681462764.1980667-CDS-Ecto-sp13_S_contig14294:3407..3646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14294 3408..3646 -
1681462764.2089024-CDS-Ecto-sp13_S_contig14294:3967..40041681462764.2089024-CDS-Ecto-sp13_S_contig14294:3967..4004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14294 3968..4004 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462764.218198-UTR-Ecto-sp13_S_contig14294:4004..40101681462764.218198-UTR-Ecto-sp13_S_contig14294:4004..4010Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14294 4005..4010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14294.3331.1prot_Ecto-sp13_S_contig14294.3331.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14294 3408..4004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14294.3331.1

>prot_Ecto-sp13_S_contig14294.3331.1 ID=prot_Ecto-sp13_S_contig14294.3331.1|Name=mRNA_Ecto-sp13_S_contig14294.3331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MTEKLSKLEGLAAGGDDGHTLLQQHQKEMLAKLREIRAAMATETGELDSV
KEANAEVAKLREVIKRRDYRILHLTRALEAGASSSADPGSA*
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mRNA from alignment at Ecto-sp13_S_contig14294:3408..4010-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14294.3331.1 ID=mRNA_Ecto-sp13_S_contig14294.3331.1|Name=mRNA_Ecto-sp13_S_contig14294.3331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14294:3408..4010- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGATGACCGAAAAGCTCTCCAAGCTCGAGGGGCTGGCAGGTGAGCT
TGTACACTGCTGTTTTTTCAAGAGCGATTTCTTCTACACAAAAAGCGGTG
CTTCGTACCGGTCTGCTGGCGTGTACCGTAGGTTGCATAAGGTTTCACAC
CCCCTTGACCGATTTTCAAAGCTTACCTACTCCACGACGAAGAGGATGAC
GAAATTGAAGTACGTGCATTATCTCGAAAGCTCTCCACGAGACGGGTCCA
ACGCCGTCATTTTCGGCGCCCCACTGCTTTTCCTGCCGAGATGAAAAATG
AGCACCTTCCTTGCGAACACCACCCCTAAACAAACCCTCCCATTTCTCCG
CTGGATGGGAAAAGCAGGGGGGGACGACGGGCACACTCTGCTACAGCAGC
ACCAGAAGGAGATGCTCGCCAAGCTCCGGGAAATTCGCGCGGCCATGGCG
ACGGAGACGGGAGAGCTGGACTCGGTAAAGGAGGCCAACGCGGAGGTGGC
GAAGTTGCGGGAAGTCATCAAGAGGAGAGACTACCGCATATTGCACCTCA
CGAGGGCCTTGGAGGCAGGGGCGTCTTCTTCTGCTGACCCTGGGTCGGCG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14294:3408..4010-

>mRNA_Ecto-sp13_S_contig14294.3331.1 ID=mRNA_Ecto-sp13_S_contig14294.3331.1|Name=mRNA_Ecto-sp13_S_contig14294.3331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14294:3408..4010- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGAAAAGCTCTCCAAGCTCGAGGGGCTGGCAGCAGGGGGGGACGA
CGGGCACACTCTGCTACAGCAGCACCAGAAGGAGATGCTCGCCAAGCTCC
GGGAAATTCGCGCGGCCATGGCGACGGAGACGGGAGAGCTGGACTCGGTA
AAGGAGGCCAACGCGGAGGTGGCGAAGTTGCGGGAAGTCATCAAGAGGAG
AGACTACCGCATATTGCACCTCACGAGGGCCTTGGAGGCAGGGGCGTCTT
CTTCTGCTGACCCTGGGTCGGCGTGA
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