mRNA_Ecto-sp13_S_contig10337.333.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10337.333.1
Unique NamemRNA_Ecto-sp13_S_contig10337.333.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10337.333.1 vs. uniprot
Match: D7FRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF2_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 1.940e-120
Identity = 221/241 (91.70%), Postives = 225/241 (93.36%), Query Frame = 2 
Query:  692 DIYDFDATGGSSRLTRSTKAKKRRGKKRESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAGGGGDGDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGAAGKSGRGSSESPRPNLRPXXXXXXXXXXXXXXXXXSSGPLDLSGSLVIGEADMESRRRLLRPPFGGRITDSPVTSSGLWDVPTAAPSLAELEYQLRKLSPLRGMAAGASKARGAGGAGRGSRSPALKS 1414
            DIYDFDATGGSSRLTRS +AKKRRGKK+ESKLAP+AKATLTTEQRVAEILARTRSPAAIA APTA GGG  DRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEG AGKSG GSSESPRPNLRPXXXXXXXXXXXX     SSGPLDLSGSLVIGEADMES RRLLRPP+GGRITDSPVTSSG WDVPTAAPSLAELEYQLRKLSPLRGMAA ASKARGAG AGRGSRSPALKS
Sbjct:  110 DIYDFDATGGSSRLTRSAEAKKRRGKKKESKLAPKAKATLTTEQRVAEILARTRSPAAIAKAPTASGGGGDDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGVAGKSGLGSSESPRPNLRPXXXXXXXXXXXXDGDDESSGPLDLSGSLVIGEADMESHRRLLRPPYGGRITDSPVTSSGPWDVPTAAPSLAELEYQLRKLSPLRGMAAVASKARGAGSAGRGSRSPALKS 350
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BLAST of mRNA_Ecto-sp13_S_contig10337.333.1 vs. uniprot
Match: A0A6H5KN35_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN35_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 9.480e-62
Identity = 143/154 (92.86%), Postives = 146/154 (94.81%), Query Frame = 2 
Query:  731 LTRSTKAKKRRGKKRESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAGGGGDGDRGGSEDRPWTGGEGTGTFSDFAKSLRDLQQTGELDLSSEGAAGKSGRGSSESPRPNLRPXXXXXXXXXXXXXXXXXSSGPLDLSGSLVIGEADME 1192
            LTRS KAKKRRGKK+ESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAG     DRGGSEDRPWTGGEGTGTFSDFAKSLRDL+QTGELDLSSEGAAG+SGRGSSESPRPNLRP XXXXXXXXXXXXXXX SSGPLDLSGSLVIGEADME
Sbjct:    3 LTRSAKAKKRRGKKKESKLAPEAKATLTTEQRVAEILARTRSPAAIATAPTAGXXXXXDRGGSEDRPWTGGEGTGTFSDFAKSLRDLRQTGELDLSSEGAAGRSGRGSSESPRPNLRPPXXXXXXXXXXXXXXXESSGPLDLSGSLVIGEADME 156
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10337.333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRF2_ECTSI1.940e-12091.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN35_9PHAE9.480e-6292.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10337contigEcto-sp13_S_contig10337:1708..5889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1414
Hectar predicted targeting categorysignal peptide
Exons6
Cds size801
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10337.333.1prot_Ecto-sp13_S_contig10337.333.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10337 1923..3698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462524.1499798-UTR-Ecto-sp13_S_contig10337:1707..19221681462524.1499798-UTR-Ecto-sp13_S_contig10337:1707..1922Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10337 1708..1922 +
1681462524.192266-UTR-Ecto-sp13_S_contig10337:3698..37061681462524.192266-UTR-Ecto-sp13_S_contig10337:3698..3706Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10337 3699..3706 +
1681462524.2005808-UTR-Ecto-sp13_S_contig10337:4251..44191681462524.2005808-UTR-Ecto-sp13_S_contig10337:4251..4419Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10337 4252..4419 +
1681462524.209642-UTR-Ecto-sp13_S_contig10337:5509..55411681462524.209642-UTR-Ecto-sp13_S_contig10337:5509..5541Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10337 5510..5541 +
1681462524.2190914-UTR-Ecto-sp13_S_contig10337:5699..58891681462524.2190914-UTR-Ecto-sp13_S_contig10337:5699..5889Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10337 5700..5889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462524.1643846-CDS-Ecto-sp13_S_contig10337:1922..24361681462524.1643846-CDS-Ecto-sp13_S_contig10337:1922..2436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10337 1923..2436 +
1681462524.176771-CDS-Ecto-sp13_S_contig10337:2929..30461681462524.176771-CDS-Ecto-sp13_S_contig10337:2929..3046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10337 2930..3046 +
1681462524.1844501-CDS-Ecto-sp13_S_contig10337:3528..36981681462524.1844501-CDS-Ecto-sp13_S_contig10337:3528..3698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10337 3529..3698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10337.333.1

>prot_Ecto-sp13_S_contig10337.333.1 ID=prot_Ecto-sp13_S_contig10337.333.1|Name=mRNA_Ecto-sp13_S_contig10337.333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MYQRYLLCLIFVCVDMATRPHVQAKYDPHKQRVPLGIHFVSLSRFDGGRG
HEHETTTQAPKLSCPHRPRPPLSALETQAGESPSPLSGGSDAGIGGGGFS
PLSLSLSLSDSGGAGGEPGKRYGDGRRGGHGLSEYVGGVERGRRGGGVGN
DDNEGGGAVISMTSTPRVGRAGLRDLRKLRRGGARRGRVSLRPRQRRRSP
RSNEWRKSWPGQDLPLPSRLRRPLAAVATATEAAAKTGLGRAEKERGLSA
TSPSLCEICSRPGNWT*
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mRNA from alignment at Ecto-sp13_S_contig10337:1708..5889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10337.333.1 ID=mRNA_Ecto-sp13_S_contig10337.333.1|Name=mRNA_Ecto-sp13_S_contig10337.333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10337:1708..5889+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGTACGTACGCCAAGGTTGATTCCAGATCGCGGACAACCGCTCCACGT
GCATCCAAAATCTAAGATATTCCTCTCTCCAATACTACAGATGGGAGTGT
GGTTTTACGTTGAGCATCTTCATTCGCACTAGGCTCAGGCTGCACACACT
GCCCCCGGCAGGCGAGCCCGGCCCCAGACGTATGCATACAGGCGGACTAC
CCACAAAAATGTGGCATGTACCAAAGATACCTCCTCTGTTTGATCTTTGT
GTGCGTAGATATGGCGACACGACCACATGTACAGGCGAAGTACGATCCCC
ATAAACAACGCGTACCACTTGGAATTCATTTTGTCTCTTTAAGTAGGTTT
GACGGAGGCAGAGGACACGAACACGAAACAACAACACAAGCACCAAAATT
GAGTTGTCCTCATCGTCCTCGTCCTCCCTTGTCTGCCCTTGAAACTCAAG
CAGGCGAATCCCCGTCCCCGCTATCGGGGGGTAGCGACGCCGGCATCGGC
GGCGGCGGCTTTTCCCCCCTTTCCCTCTCCCTCTCCCTCTCCGACAGCGG
CGGCGCCGGCGGCGAGCCTGGTAAACGCTACGGCGACGGGCGTCGGGGGG
GGCATGGGCTCAGCGAGTACGTGGGCGGGGTTGAGAGGGGGCGACGCGGA
GGTGGTGTTGGGAATGATGACAACGAGGGGGGGGGGGCGGTGATATCTAT
GACTTCGACGCCACGGGTGGGTCGAGCAGGTGGGGGGGGGGGTGGGGGGT
GCGTTTTTTCCTTCGCGGGGGCCCGTGGAGGCATGGGGTACGGCGCGTTG
GAGGAATTCCCTGTGTGCGTTGATGTGCACTCCCGCCACTGGCTGCTCCC
TAGATCTTCTTCTATGCTCAAGCATCGTCCTGCTGGCGCTCCAGTTTCCA
TTACCCGCAATATCGGTTGTTGTTCTGTGCTGCTGCTTTTCTATTCCGTT
CTACTTTGGCGTTTGTATCCCTCGTCCTTGTGACACAAAGGACAAAGCAC
GAGCTAAGCTATTTATCGTCCTACCGATCGCCGTGAGGCAAACATGCACA
GGTCGCCTGTGCCCTACTGATCACAAGGGACATACATATGTACCCTTCAC
AAGAGCTGGCTTGATCTGTAGGAATCTGTTATTTGTGTGCCTCCTTTTCT
TCCGTGACCTTTACGCACTCTCTTGTTGCCCTTTTCGGGCCGGGGCTACA
CAACCGTGTGCGCCGTGGGCAGGCTTACGCGATCTACGAAAGCTAAGAAG
AGGCGGGGCAAGAAGAGGGAGAGTAAGCTTGCGCCCGAGGCAAAGGCGAC
GCTCACCACGGAGCAACGAGTGGCGGAAATCCTGGCCAGGTAGATAAAAT
AGCACTCTTACGTGTGCCCTTCATCACGCAGAAGTCAGAGTATTTTGGGA
GGCGTATGTCCAGACGGGAAACGGAAGCCAGGAGTTGCACGTTTGCACCG
CATTTTGAGGTCGTCTCCTGCGGGAGGAAGAAGAGGGACAGGGGGGGATG
ACGCAAGCGCATGTTTGGGGGGGACGTATTCTCTTTTGTTTCCTGGGTTA
GGACGCGTAATGTCTCGGGACGTTTTTTTTTTTCTTGTTTCGAGCAATTT
TTGGGTAGGCGCAAAACGGAGTCGGACGATTTGTGTCTTGCTGTACGTGG
ATCGCTCGCTTGTCGAACGGCGTGTTCGAAGTGCACACTCAAACAGAGGT
GTTCGGCTCGATCGGCCCCTCCGTGTGGCACACCCGCGGCCAGAACTCCT
GCTGCTGTGCTTGATGTTATCCCTTGCACTCCGCTTGTCGCCGAAAAACT
GACCCCCAACAACTCGCGCAGGACAAGATCTCCCGCTGCCATCGCGACTG
CGCCGACCGCTGGCGGCGGTGGCGACGGCGACAGAGGCGGCAGCGAAGAC
CGGCCTTGGACGGGCGGAGAAGGAACGGGGACTTTCAGCGACTTCGCCAA
GTCTTTGCGAGATCTGCAGCAGACCGGGGAACTGGACTTGAGCTCGGAGG
TGTGTGTTGACCGTACACCCGATGCTGTCGTGTCTGCTTTGCTGTGTGTT
GCTTTAGGGGGAAGGTTCGTCAGCAGCGCCGCGGTAGTAGGTTCGCATAC
GAGAACGTGTAGGATGCTTGTGTGGCAGGCTGGCTGGCTGGCTGCCTTGG
TGATGAAGGCTCATATCTTGCTTCTGGCCGTTGGACTGACTCATTCCGAT
GCCCCCGCTCCCGGCGTGCCGCACCGTAGGTACTATTTTCAGGGCGCTAC
TCTCTCTATCTCTCCATCTCTCTTTCTTTCTATGTATCGACCTCTTTCTT
ATCAAGTCTCATTTTTGTACGGTGCCGCAGCTGCTGCACGGGCGTTCTCT
CGAAAGCCATTGTGCCGCCGACCTCGGCTCTTAATCCGGGGTATTGCCTG
TAGCGTCGTTCTGTGCATGGGATGTCCGTCCGCTCTGCCATGTAATTCCA
TCACCACCTACGTACCACCTTGTCCCCAACCGTCTCCTACCTCCTCCTGC
CGCCCCAACGGGATCCTCTCTTGTCGGTCCCTTTTCGTGCGTAGGGTGCG
GCGGGCAAGAGCGGGCGCGGCTCGTCGGAATCGCCCCGCCCGAACCTAAG
GCCGCCGCCGCCGGAACGCCTTCCGCCCCAACACCACCGCGACGACGACG
ACGAGAGCAGCGGGCCGCTGGATCTGTCCGGATCCCTGGTGATAGGCGAG
GCCGACATGGAGGTGGGCGGGTACGCCCGCGCTCGTCAGGCGGAGGAGGA
GCAGGAGGAGGGGCGACGGAAAGGGAGAGGAGGGGACGGCCGCGGTGGTG
GTGGGGTTGGAGGGAAGGGAGAGAGCGAGCCGGCGGCGGTACCGTCTGCA
GAGAGAGCCCCTGAGGAGGAGGAGGAGGACGAGGACGAGGACGAGGACGA
GGACGAGGACGAGGGTCAAGCCGATGATGGTCAGGGCTCGCCGCGATCAG
GGGCGGGGAGCGAGGACACGGGTTACAACGACGAAGGTTTCGAGGAGCCA
CCACCGGAAGAAGAAGCGGAGGGAGAGCACGGCGGGGAAAGGCAACAGCC
ACCAGGTCAGAAAGAACAAGAGCAGCGACTGCGCCCTACTGCAGGAGTCC
CCGTTCCCGCCGACGTCTTCCCAGGCGGTGGTAGCGGTGGCGGCCGAATG
GCCAGCCCTCTTTCCGGACGGAGCCCTGCAGCCTTGTCCACCGTGACCGG
CGGCGGCGGCGGCGGCCGTGGCGGCAGAGCAGTAGCAGCACTGGCCAGTC
CAAGTGCCCGGAGCACCGCTAGCCTTCCACCCTCGCCGCCCGCGTCGCCG
CCCCCGGCCGCCGCTTCGCCGGATCGCCGCCGGAGGGCCGAGGGAGGAGG
AGGGCCTTCGGCAACGGTCGTGGGAACAACGGCTCTAGAGTCAGAGGCCT
TCAGCGAGGAGCAGGAAGAGGCGCGGCGGCGCCGGGCTGCGCCCCAGCAG
CAGCCCCCTCCTCCGTCGCCGCCCCCACCTCCCCCGCCGTCGCACTTACC
GGAGGAAGAGCGAACGAGCGATGGCGCGTGGTATGCTGAAGGAGGCGCGG
GAGGCAGCAGCATCAGCAGCGGCGGCGGCGGTGGGCGGAAGAAGGCGGAG
GCGGCCTCCTGGGTAAAGGGGCAGGGGTCGACGCATGATCGTGATCGGCA
AGGGGCGGCAGGCGCGACGACAACAGCAACGACGATGACCCTTGCGCGGG
ACGTGACCCCGTCGTTCCTCCGATACCCTTCCGCCGGCCGCGGCCGGGCG
GCCCGCGGACCCAATTCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGC
AGAGCCGTCGACGGCTGCTGCGCCCTCCGTTCGGGTAAGCGACAACCGCC
GGCCGCGGCCTTCGACGGACGGTGGTGGTCTCGATGGCGGTGTCGGACGG
CACCGCCACGGGGGACACGACCAACACAACCATCCCGCCGCCCCCGTCGC
TGCCGCCGCCGCCGCCGCGGGCGATCTTCTCCTCCCCGGCAGGGGGCGGA
TAACGGACAGCCCCGTCACGTCCAGCGGGCTCTGGGACGTACCCACGGCG
GCCCCGTCGCTCGCGGAGCTAGAGTACCAGCTCCGAAAGCTGAGCCCGCT
CCGCGGCATGGCGGCCGGGGCGAGCAAGGCCCGCGGCGCCGGCGGCGCCG
GCCGTGGCAGCAGATCTCCCGCTCTTAAGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10337:1708..5889+

>mRNA_Ecto-sp13_S_contig10337.333.1 ID=mRNA_Ecto-sp13_S_contig10337.333.1|Name=mRNA_Ecto-sp13_S_contig10337.333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10337:1708..5889+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACCAAAGATACCTCCTCTGTTTGATCTTTGTGTGCGTAGATATGGC
GACACGACCACATGTACAGGCGAAGTACGATCCCCATAAACAACGCGTAC
CACTTGGAATTCATTTTGTCTCTTTAAGTAGGTTTGACGGAGGCAGAGGA
CACGAACACGAAACAACAACACAAGCACCAAAATTGAGTTGTCCTCATCG
TCCTCGTCCTCCCTTGTCTGCCCTTGAAACTCAAGCAGGCGAATCCCCGT
CCCCGCTATCGGGGGGTAGCGACGCCGGCATCGGCGGCGGCGGCTTTTCC
CCCCTTTCCCTCTCCCTCTCCCTCTCCGACAGCGGCGGCGCCGGCGGCGA
GCCTGGTAAACGCTACGGCGACGGGCGTCGGGGGGGGCATGGGCTCAGCG
AGTACGTGGGCGGGGTTGAGAGGGGGCGACGCGGAGGTGGTGTTGGGAAT
GATGACAACGAGGGGGGGGGGGCGGTGATATCTATGACTTCGACGCCACG
GGTGGGTCGAGCAGGCTTACGCGATCTACGAAAGCTAAGAAGAGGCGGGG
CAAGAAGAGGGAGAGTAAGCTTGCGCCCGAGGCAAAGGCGACGCTCACCA
CGGAGCAACGAGTGGCGGAAATCCTGGCCAGGACAAGATCTCCCGCTGCC
ATCGCGACTGCGCCGACCGCTGGCGGCGGTGGCGACGGCGACAGAGGCGG
CAGCGAAGACCGGCCTTGGACGGGCGGAGAAGGAACGGGGACTTTCAGCG
ACTTCGCCAAGTCTTTGCGAGATCTGCAGCAGACCGGGGAACTGGACTTG
A
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