mRNA_Ecto-sp13_S_contig14291.3330.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14291.3330.1
Unique NamemRNA_Ecto-sp13_S_contig14291.3330.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: D8LGK0_ECTSI (MPAB_Lcp_cat domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK0_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 2.370e-55
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:    1 LPKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            + KSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAM RLNAIHSMYAKEISNADMLFTLSQFVTA ALWINR
Sbjct:   61 MTKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMGRLNAIHSMYAKEISNADMLFTLSQFVTARALWINR 156
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BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: A0A6L7FYE3_9RHOB (DUF2236 domain-containing protein n=1 Tax=Pseudooceanicola sp. GBMRC 2024 TaxID=2692189 RepID=A0A6L7FYE3_9RHOB)

HSP 1 Score: 110 bits (276), Expect = 1.080e-27
Identity = 53/94 (56.38%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    7 KSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            K+LEFALF TY +PSIS LL +TGEFR++  KRYDDT+ +L E  E+G+D DRG+ A+ R+NA+H  Y   I NADML+ LS F+T P  W+ R
Sbjct:   35 KALEFALFRTYAIPSISGLLVRTGEFRRNTRKRYDDTELLLSEISENGQDSDRGQAALGRINAMHGRY--RIDNADMLYVLSTFITEPVRWMAR 126
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BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: S9P1H5_9DELT (MPAB_Lcp_cat domain-containing protein n=3 Tax=Cystobacter TaxID=42 RepID=S9P1H5_9DELT)

HSP 1 Score: 110 bits (274), Expect = 2.410e-27
Identity = 54/94 (57.45%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:    7 KSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            K+LEFALF TY VPSI KLLD TGEF +   KRYDDTD ++ E+LESG D DRGR A+ R+N +H  +  +ISN D L+ LS FV  P  W+ R
Sbjct:   38 KALEFALFRTYAVPSIGKLLDSTGEFTRRTQKRYDDTDLLIAEFLESGYDSDRGRRAIRRMNQLHHRF--DISNDDYLYVLSTFVLEPIRWMER 129
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BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: M9RS21_9RHOB (MPAB_Lcp_cat domain-containing protein n=1 Tax=Octadecabacter arcticus 238 TaxID=391616 RepID=M9RS21_9RHOB)

HSP 1 Score: 108 bits (270), Expect = 8.070e-27
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:    1 LPKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            + K+LE ALF TYGVPSIS LL KTG FR    KRYDDT+ +L E  E+G+D DRG+ AM+R+N +H  Y   ISN D+L+ LS FVT P  W++R
Sbjct:   33 IEKALELALFRTYGVPSISGLLSKTGAFRDDTQKRYDDTELLLSEIGENGQDSDRGQAAMERINDMHGRY--RISNGDILYVLSTFVTEPKHWLDR 126
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BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: A0A1L9NVG8_9RHOB (MPAB_Lcp_cat domain-containing protein n=1 Tax=Planktotalea frisia TaxID=696762 RepID=A0A1L9NVG8_9RHOB)

HSP 1 Score: 106 bits (264), Expect = 5.670e-26
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 LPKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            + K+LEFALF TY VPSIS LL +TG F K   KRYDDT+ IL E  E+G+D D GR A++R+N +H  Y   ISN DML+ LS FV  P  W+ R
Sbjct:   33 IEKALEFALFRTYAVPSISSLLSRTGAFSKDTRKRYDDTELILSEIAENGQDSDPGRKAIERMNDMHGRY--RISNNDMLYVLSAFVVEPVKWLER 126
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BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: A0A1M6J877_9RHOB (MPAB_Lcp_cat domain-containing protein n=2 Tax=Maribius TaxID=387095 RepID=A0A1M6J877_9RHOB)

HSP 1 Score: 105 bits (263), Expect = 1.000e-25
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 LPKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            + K+LEFALF TY VPSIS LL +TG FR+   KRYDDT+ +L E  E+G+   RGR A+DR+N +H  Y   ISNADML+ L+ FV  P  W++R
Sbjct:   33 IEKALEFALFRTYAVPSISGLLSRTGAFRRDTRKRYDDTELLLSEISENGQHSARGRAALDRINEMHGHY--RISNADMLYVLTTFVVEPPRWLDR 126
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BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: A0A853AP40_9PSEU (MPAB_Lcp_cat domain-containing protein n=1 Tax=Saccharopolyspora hordei TaxID=1838 RepID=A0A853AP40_9PSEU)

HSP 1 Score: 105 bits (261), Expect = 2.160e-25
Identity = 55/96 (57.29%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 LPKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            + K+LEFALF TY VPSI +LLD+TGEF +   KRYDDT  IL E    G   +RGR A+D+LNAIH  Y   ISN D L+TLS FV  P  WI R
Sbjct:   35 ITKALEFALFRTYAVPSIGRLLDRTGEFAERPQKRYDDTVVILYEIFHWGTGSERGREALDQLNAIHGRY--RISNDDHLYTLSTFVVTPVRWIER 128
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BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: A0A1H3RS31_9RHOB (MPAB_Lcp_cat domain-containing protein n=2 Tax=Jannaschia faecimaris TaxID=1244108 RepID=A0A1H3RS31_9RHOB)

HSP 1 Score: 104 bits (259), Expect = 2.620e-25
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 LPKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            + +SLEFALF TY VPSIS LL KTGEF +   KRYDDT+ IL E +E+G D  RG+ A+ R+NA+H+ Y   ISN DM + LS FV  P  WI+R
Sbjct:   21 IERSLEFALFRTYAVPSISGLLAKTGEFERAPRKRYDDTELILSEMVENGLDSPRGQAALARMNAMHANY--RISNDDMRYVLSTFVLEPVRWIDR 114
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BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: UPI001CFE62A8 (hypothetical protein n=1 Tax=Microseira wollei TaxID=467598 RepID=UPI001CFE62A8)

HSP 1 Score: 100 bits (250), Expect = 3.300e-25
Identity = 53/96 (55.21%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 LPKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            + +SLE ALF TY VPSIS LLDKTGEFR    KRYDDT  I+ E ++SG D DRG+ A+ R+N +H  +   ISNAD L+ LS FV  P  W  R
Sbjct:   35 ITRSLEIALFRTYCVPSISALLDKTGEFRYRAQKRYDDTALIMAEIMKSGYDSDRGKEAIRRMNYMHGRF--NISNADFLYVLSTFVYEPIRWCVR 128
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Match: A0A5M7BDM8_SACHI (DUF2236 domain-containing protein n=1 Tax=Saccharopolyspora hirsuta TaxID=1837 RepID=A0A5M7BDM8_SACHI)

HSP 1 Score: 104 bits (259), Expect = 4.270e-25
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 LPKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR 288
            + K+LEFALF TY VPSI +LLD+TGEF +   KRYDDT  IL E    G + DRGR A+++LNAIH  Y   ISN D L+TLS FV  P  WI +
Sbjct:   35 ITKALEFALFRTYAVPSIGRLLDRTGEFTRCPQKRYDDTLMILYEIFHWGTESDRGREALEQLNAIHGRY--RISNDDYLYTLSTFVVTPVRWIEQ 128
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14291.3330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK0_ECTSI2.370e-5595.83MPAB_Lcp_cat domain-containing protein n=2 Tax=Ect... [more]
A0A6L7FYE3_9RHOB1.080e-2756.38DUF2236 domain-containing protein n=1 Tax=Pseudooc... [more]
S9P1H5_9DELT2.410e-2757.45MPAB_Lcp_cat domain-containing protein n=3 Tax=Cys... [more]
M9RS21_9RHOB8.070e-2756.25MPAB_Lcp_cat domain-containing protein n=1 Tax=Oct... [more]
A0A1L9NVG8_9RHOB5.670e-2655.21MPAB_Lcp_cat domain-containing protein n=1 Tax=Pla... [more]
A0A1M6J877_9RHOB1.000e-2554.17MPAB_Lcp_cat domain-containing protein n=2 Tax=Mar... [more]
A0A853AP40_9PSEU2.160e-2557.29MPAB_Lcp_cat domain-containing protein n=1 Tax=Sac... [more]
A0A1H3RS31_9RHOB2.620e-2556.25MPAB_Lcp_cat domain-containing protein n=2 Tax=Jan... [more]
UPI001CFE62A83.300e-2555.21hypothetical protein n=1 Tax=Microseira wollei Tax... [more]
A0A5M7BDM8_SACHI4.270e-2556.25DUF2236 domain-containing protein n=1 Tax=Saccharo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14291contigEcto-sp13_S_contig14291:140..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score187.2
Seed ortholog evalue3.6e-45
Seed eggNOG ortholog2880.D8LGK0
Model size291
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.oleate hydratase activity
EggNOG OGs2S1KN@2759,COG4716@1
Cds size291
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462764.1603875-CDS-Ecto-sp13_S_contig14291:139..3261681462764.1603875-CDS-Ecto-sp13_S_contig14291:139..326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14291 140..326 -
1681462764.1722357-CDS-Ecto-sp13_S_contig14291:668..7721681462764.1722357-CDS-Ecto-sp13_S_contig14291:668..772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14291 669..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14291.3330.1prot_Ecto-sp13_S_contig14291.3330.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14291 140..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14291.3330.1

>prot_Ecto-sp13_S_contig14291.3330.1 ID=prot_Ecto-sp13_S_contig14291.3330.1|Name=mRNA_Ecto-sp13_S_contig14291.3330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
LPKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESG
KDGDRGRTAMDRLNAIHSMYAKEISNADMLFTLSQFVTAPALWINR*
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mRNA from alignment at Ecto-sp13_S_contig14291:140..772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14291.3330.1 ID=mRNA_Ecto-sp13_S_contig14291.3330.1|Name=mRNA_Ecto-sp13_S_contig14291.3330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14291:140..772- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCGAAGTCGCTAGAGTTTGCGCTCTTCGCGACCTACGGCGTGCCCTC
CATCTCGAAGCTGCTTGACAAGACGGGGGAGTTTCGGAAACACGTCGGCA
AGAGGTGGGAATTGGACGAACACTAACAGTCCCTCCTCCGCCTGCGGTGT
TTTGTCTTTGGTTTTTCCTTGCCGCACCATCTCGACTGGAGGATTTTCTC
GTGCTGGGGTCTCAACATCGTCTTCGGAACCATTCTCTTTTTTCCTTTTA
CGTTGTATGGCTCGTAATGGCGGAAGAGAGGGTCGTGTAATTTTGTCATG
CTCGGGGCATATGGACGTATGGAAGTGGAGCGTGCGCTCGACTTTCTGGG
TTCATTGCCGGTGGGGCCTTGATACGACAGCGGCAACACACAACAGCAAT
AACGACAACGACAGCAAAAAACAGCAGCAGCAACAACGTTTTACAGGTAC
GACGACACGGACTTCATCCTTCGGGAGTACCTCGAGAGCGGGAAGGACGG
AGACCGGGGCAGGACGGCCATGGACCGGCTGAACGCTATCCACTCCATGT
ACGCCAAGGAGATCAGCAACGCCGACATGCTCTTCACGCTCTCGCAATTC
GTCACCGCGCCGGCTCTGTGGATCAACAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14291:140..772-

>mRNA_Ecto-sp13_S_contig14291.3330.1 ID=mRNA_Ecto-sp13_S_contig14291.3330.1|Name=mRNA_Ecto-sp13_S_contig14291.3330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14291:140..772- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCGAAGTCGCTAGAGTTTGCGCTCTTCGCGACCTACGGCGTGCCCTC
CATCTCGAAGCTGCTTGACAAGACGGGGGAGTTTCGGAAACACGTCGGCA
AGAGGTACGACGACACGGACTTCATCCTTCGGGAGTACCTCGAGAGCGGG
AAGGACGGAGACCGGGGCAGGACGGCCATGGACCGGCTGAACGCTATCCA
CTCCATGTACGCCAAGGAGATCAGCAACGCCGACATGCTCTTCACGCTCT
CGCAATTCGTCACCGCGCCGGCTCTGTGGATCAACAGGTGA
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