mRNA_Ecto-sp13_S_contig14287.3326.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14287.3326.1
Unique NamemRNA_Ecto-sp13_S_contig14287.3326.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: D7G8M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M4_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 8.240e-62
Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    1 SYKVCVAFLATSPALARGREWSRLGRSGGFASASSTRVEMVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG 354
            S +VCVAFLA +PALARG EW+RLGRSGG ASASSTRVEMVAAEAA GQKQLETLKFLT ETARATK AVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG
Sbjct:   22 SVQVCVAFLAAAPALARGGEWARLGRSGGSASASSTRVEMVAAEAAAGQKQLETLKFLTPETARATKAAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG 139          
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A6H5JSP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP9_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 5.850e-58
Identity = 114/131 (87.02%), Postives = 118/131 (90.08%), Query Frame = 1
Query:    7 KVCVAFLATSPALARGREWSRLGRSGGFASASSTRVEMVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
            +VCVAFL TS ALARGRE +RLGRSGGFASASSTRVEMVAAEAAVGQKQLETLKFLT ETARATK AVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG  L F  S+  +V R
Sbjct:  107 QVCVAFLTTSSALARGRECARLGRSGGFASASSTRVEMVAAEAAVGQKQLETLKFLTPETARATKAAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQGLGLHFDCSSGFEVER 237          
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A836CQQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQQ3_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.420e-20
Identity = 59/94 (62.77%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  118 MVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
            MVAAE  V  K LE L+FLT ETA A +   GTPAYVYD ASLKANA  CL+FPNA+GLTVR+AMKS PN AVLQLF    L    S+  +V R
Sbjct:    1 MVAAEPEVETK-LEQLRFLTPETAEAVRSTYGTPAYVYDVASLKANARECLSFPNAFGLTVRFAMKSCPNAAVLQLFNSMGLHIDASSGWEVRR 93          
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A7S4A701_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A701_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.030e-16
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
Query:  154 LETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
            LE L+FL+ +  R+ +   GTP YVYDAA+LKA AE  LAFPNAYGLTVRYAMK+ PN AVL+LF+   L+F  S+  +V R
Sbjct:   56 LEKLRFLSNDDVRSVQQDFGTPTYVYDAATLKARAEEALAFPNAYGLTVRYAMKACPNGAVLKLFESMGLNFDASSTHEVRR 137          
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A7S2SXD7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SXD7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.530e-16
Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  115 EMVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
            E+  A  A     +ETLKFLT ++ARA +  VGTPAY Y   +LK NA A LAFP+AYGLT R+AMKS PN A+LQLF    L F  S+  +V R
Sbjct:   46 ELRMAATATSIAAVETLKFLTPDSARAVRETVGTPAYAYHLPTLKENAAAVLAFPHAYGLTPRFAMKSCPNAAILQLFSSMGLHFDASSTFEVRR 140          
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A2D7DJK1_9SPIO (Diaminopimelate decarboxylase n=1 Tax=Spirochaeta sp. TaxID=28185 RepID=A0A2D7DJK1_9SPIO)

HSP 1 Score: 86.7 bits (213), Expect = 5.800e-16
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  163 LKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
            ++FL  E AR      GTP YVYDAA+LKA AE  LAFPNAYGLTVRYAMK+ PN AVL+LF+   L+F  S+  +V R
Sbjct:    1 MRFLNNEEARTVAQDFGTPTYVYDAATLKARAEEALAFPNAYGLTVRYAMKACPNGAVLKLFESMGLNFDASSTHEVRR 79          
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A5J4Z8F2_PORPP (Diaminopimelate decarboxylase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8F2_PORPP)

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-15
Identity = 54/108 (50.00%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   76 RSGGFASASSTRVEMVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
            R G +A   +     + A A V Q+Q   L+FL AETA   +  VGTP YVYD  SL+A AEA L FPNA+GLTVRYAMK+ PN AVLQLF+   L    S+  ++ R
Sbjct:   34 RGGAYARRGAVAALTMTATAPVSQQQYA-LRFLDAETALQVQQKVGTPCYVYDMKSLRAQAEAMLKFPNAFGLTVRYAMKAAPNVAVLQLFKKMGLHIDASSGYEIRR 140          
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A8G0V6J3_9BACT (Diaminopimelate decarboxylase n=1 Tax=Ruficoccus sp. ZRK36 TaxID=2866311 RepID=A0A8G0V6J3_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 1.940e-15
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 1
Query:  154 LETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
            +ETLKFLT E AR      GTP YVYD ASLK +AEA LAFPNA+GLTVR+AMK+ PN A+L++F    L    S+  +V R
Sbjct:    1 METLKFLTPELARQIAADYGTPVYVYDEASLKRHAEAALAFPNAFGLTVRFAMKASPNAAILRVFHRLGLHIDASSGFEVRR 82          
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A7S0GTX5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GTX5_MICPS)

HSP 1 Score: 85.1 bits (209), Expect = 2.410e-15
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 1
Query:  133 AAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
            AA G   +E+L+FL  E A+A + A GTPAYVYD A L+  AE  LAFPNA+GLTVRYAMK+ PN A+L++F+   L+   S+  +V R
Sbjct:   52 AAAGDAAVESLQFLKPEEAKAVRDAFGTPAYVYDLARLEEQAEKALAFPNAFGLTVRYAMKASPNAAILKVFRKKGLNIDASSGYEVRR 140          
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A7S1XR44_9STRA (Hypothetical protein (Fragment) n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR44_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.480e-15
Identity = 47/82 (57.32%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  154 LETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
            +ETL+FL  ETAR     VGTPAYVY  A L   A+  LAFPNAYGLT RYAMKS PN A+LQLF    L    S+  +V R
Sbjct:   50 METLRFLNPETAREIAAKVGTPAYVYSEAELTTQAKTALAFPNAYGLTARYAMKSSPNAAILQLFDKLGLHIDASSGFEVRR 131          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8M4_ECTSI8.240e-6291.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSP9_9PHAE5.850e-5887.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CQQ3_9STRA1.420e-2062.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A701_9STRA1.030e-1658.54Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S2SXD7_9STRA1.530e-1653.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D7DJK1_9SPIO5.800e-1659.49Diaminopimelate decarboxylase n=1 Tax=Spirochaeta ... [more]
A0A5J4Z8F2_PORPP1.300e-1550.00Diaminopimelate decarboxylase n=1 Tax=Porphyridium... [more]
A0A8G0V6J3_9BACT1.940e-1557.32Diaminopimelate decarboxylase n=1 Tax=Ruficoccus s... [more]
A0A7S0GTX5_MICPS2.410e-1552.81Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S1XR44_9STRA3.480e-1557.32Hypothetical protein (Fragment) n=3 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14287contigEcto-sp13_S_contig14287:1433..3137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score145.2
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog2880.D7G8M4
Model size732
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2D61D@1,2T0D3@2759
Cds size240
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462763.799437-UTR-Ecto-sp13_S_contig14287:1432..15491681462763.799437-UTR-Ecto-sp13_S_contig14287:1432..1549Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14287 1433..1549 +
1681462763.830719-UTR-Ecto-sp13_S_contig14287:2762..31371681462763.830719-UTR-Ecto-sp13_S_contig14287:2762..3137Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14287 2763..3137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462763.8106363-CDS-Ecto-sp13_S_contig14287:1549..16151681462763.8106363-CDS-Ecto-sp13_S_contig14287:1549..1615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14287 1550..1615 +
1681462763.820596-CDS-Ecto-sp13_S_contig14287:2588..27621681462763.820596-CDS-Ecto-sp13_S_contig14287:2588..2762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14287 2589..2762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14287.3326.1prot_Ecto-sp13_S_contig14287.3326.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14287 1550..2762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14287.3326.1

>prot_Ecto-sp13_S_contig14287.3326.1 ID=prot_Ecto-sp13_S_contig14287.3326.1|Name=mRNA_Ecto-sp13_S_contig14287.3326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEAC
LAFPNAYGLTVRYAMKSLPNKAVLQLFQG*
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mRNA from alignment at Ecto-sp13_S_contig14287:1433..3137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14287.3326.1 ID=mRNA_Ecto-sp13_S_contig14287.3326.1|Name=mRNA_Ecto-sp13_S_contig14287.3326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14287:1433..3137+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTACAAGGTATGTGTAGCGTTTTTGGCGACTTCTCCGGCGTTGGCTCG GGGACGAGAGTGGTCGCGGCTGGGTCGGAGCGGCGGCTTCGCTTCTGCGA GCAGCACACGGGTCGAGATGGTGGCTGCCGAGGCGGCCGTGGGGCAGAAG CAGCTTGAAACGCTCAAGTTCCTGACCGCTGAGGTTTGTGGGGGAAGAAG GAGGACTGTTTTCTGTCTTCTTCTATTTTCATACCTCGCCCTCTGCTTCC TGTTCTACTCTGTCAGCCGGTCTCTCGTGAAAATGGTCGCCTTGCTCGAC GGTGGAAGTGCTCACACACGCGGAAAGCTGTTGCGATGCGTGCCCTTGAG CTGGAGCCACGCCTCTCGAGTCTTTGGTCTGGTCCTTGTCTGATCTCAAC ACCATCTTGTTTGATGGTAGTAAGACGAGAGCACCGACGTCAGAGTGTTG TGTTTTGCGCATGTCCGGATGTTGGTCCGGATGTTGAAACCTCACGTCTG CGGTGGCATGTACTGTCTATGGATGTCTGGGGCGTATCCAGCCTTTGGCG CGTTGCGAGAGATTGGTGGCGACGAAATTTTCTTCAGGGGACGCTCCGCG TACCGGCATTTGCATAGCTGTGTGACTCGACAACGACCATCGGCGGGTCG CGCGCGGAGGCGGCGGTTGTGCGTGCCTCCGGCGCACATGGATGCTGTCG CCTAGCTCCGCCCAAACGTGCTGGATTTGCCCGTTACGTGTGTGCAATGG CTGTTCGTCCGTGTCCTTGTCTAGTGTGGACACTTTTTTGCTCGTGGTCC TTTGATTTCTACACCATCTCGTCGACTGTAAGTCGTTGTATGTATGTGTG TGTTGTTGTTCTTGGCATCGAAGGCGCTCACCGGCTGACCAATGAGTACA CGTTGGTCTCAGTGCGGCTAAAGACGAAAACGGTTTTGAACGCCATGATG ACGTGTGTGCATGTGTTTCTGCTTATGGATACCGGAAGCGCGAATCGGCC GACCATTGAGCACACGTGCAGCAGCTTGCGCGCGTACGCCCGTACAACCT TGACCTCCGTTCGCCTGTCTATGCCTCCTTGCTCCCTCCGTGCGCATCTC CCTTGCGCCCCCCCCCCCCCTCCGGGTGGCCTCGTCCTTTCGTCTTGGTG GCTCAGACGGCACGCGCGACGAAGGTGGCCGTGGGAACCCCGGCTTACGT GTACGACGCGGCGAGCCTGAAGGCCAACGCGGAGGCGTGCCTGGCGTTCC CGAACGCTTACGGCCTGACGGTGCGCTACGCCATGAAGAGCCTCCCCAAC AAGGCGGTGCTGCAGCTGTTCCAAGGGTGAGAACTTGACTTTCAACACAG CAATCGGACAGATGTGTGCCGCTGGAGCTCCGTCATATGGCGAAGAAACA ATCGCCCTCCCCTAGCTCCTCCCCTCCTCCTGTTGTTTGCCATCGGGGTT GGGTTTTCGTCGCTTGGCACCGACGTTGTATAACAAGCCCCCCCCTCGGT GTTTGCCATCGGGCTTGGGTTTTCGTCGCTTGTCAACGACGTTGTAAAAC AAGCCAATTTACTTTGGGAACTCGGCAACCAGGTCACCTGTTTTTTTTAC CTCTGGTGTTTTTGTTTTACGGTAACGATAGTGGTGGTCGAGTAGATCAT GTTGTCGGGGTTGAGAACCCTCCTTCCGCGCAAGGGGGATGATCGCACCA CGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14287:1433..3137+

>mRNA_Ecto-sp13_S_contig14287.3326.1 ID=mRNA_Ecto-sp13_S_contig14287.3326.1|Name=mRNA_Ecto-sp13_S_contig14287.3326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14287:1433..3137+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCTGCCGAGGCGGCCGTGGGGCAGAAGCAGCTTGAAACGCTCAA
GTTCCTGACCGCTGAGACGGCACGCGCGACGAAGGTGGCCGTGGGAACCC
CGGCTTACGTGTACGACGCGGCGAGCCTGAAGGCCAACGCGGAGGCGTGC
CTGGCGTTCCCGAACGCTTACGGCCTGACGGTGCGCTACGCCATGAAGAG
CCTCCCCAACAAGGCGGTGCTGCAGCTGTTCCAAGGGTGA
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