mRNA_Ecto-sp13_S_contig14287.3326.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: D7G8M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M4_ECTSI) HSP 1 Score: 199 bits (506), Expect = 8.240e-62 Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = 1
Query: 1 SYKVCVAFLATSPALARGREWSRLGRSGGFASASSTRVEMVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG 354
S +VCVAFLA +PALARG EW+RLGRSGG ASASSTRVEMVAAEAA GQKQLETLKFLT ETARATK AVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG
Sbjct: 22 SVQVCVAFLAAAPALARGGEWARLGRSGGSASASSTRVEMVAAEAAAGQKQLETLKFLTPETARATKAAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG 139
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A6H5JSP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP9_9PHAE) HSP 1 Score: 202 bits (514), Expect = 5.850e-58 Identity = 114/131 (87.02%), Postives = 118/131 (90.08%), Query Frame = 1
Query: 7 KVCVAFLATSPALARGREWSRLGRSGGFASASSTRVEMVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
+VCVAFL TS ALARGRE +RLGRSGGFASASSTRVEMVAAEAAVGQKQLETLKFLT ETARATK AVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG L F S+ +V R
Sbjct: 107 QVCVAFLTTSSALARGRECARLGRSGGFASASSTRVEMVAAEAAVGQKQLETLKFLTPETARATKAAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQGLGLHFDCSSGFEVER 237
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A836CQQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQQ3_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.420e-20 Identity = 59/94 (62.77%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 118 MVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
MVAAE V K LE L+FLT ETA A + GTPAYVYD ASLKANA CL+FPNA+GLTVR+AMKS PN AVLQLF L S+ +V R
Sbjct: 1 MVAAEPEVETK-LEQLRFLTPETAEAVRSTYGTPAYVYDVASLKANARECLSFPNAFGLTVRFAMKSCPNAAVLQLFNSMGLHIDASSGWEVRR 93
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A7S4A701_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A701_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.030e-16 Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 154 LETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
LE L+FL+ + R+ + GTP YVYDAA+LKA AE LAFPNAYGLTVRYAMK+ PN AVL+LF+ L+F S+ +V R
Sbjct: 56 LEKLRFLSNDDVRSVQQDFGTPTYVYDAATLKARAEEALAFPNAYGLTVRYAMKACPNGAVLKLFESMGLNFDASSTHEVRR 137
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A7S2SXD7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SXD7_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.530e-16 Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 115 EMVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
E+ A A +ETLKFLT ++ARA + VGTPAY Y +LK NA A LAFP+AYGLT R+AMKS PN A+LQLF L F S+ +V R
Sbjct: 46 ELRMAATATSIAAVETLKFLTPDSARAVRETVGTPAYAYHLPTLKENAAAVLAFPHAYGLTPRFAMKSCPNAAILQLFSSMGLHFDASSTFEVRR 140
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A2D7DJK1_9SPIO (Diaminopimelate decarboxylase n=1 Tax=Spirochaeta sp. TaxID=28185 RepID=A0A2D7DJK1_9SPIO) HSP 1 Score: 86.7 bits (213), Expect = 5.800e-16 Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 163 LKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
++FL E AR GTP YVYDAA+LKA AE LAFPNAYGLTVRYAMK+ PN AVL+LF+ L+F S+ +V R
Sbjct: 1 MRFLNNEEARTVAQDFGTPTYVYDAATLKARAEEALAFPNAYGLTVRYAMKACPNGAVLKLFESMGLNFDASSTHEVRR 79
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A5J4Z8F2_PORPP (Diaminopimelate decarboxylase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8F2_PORPP) HSP 1 Score: 85.9 bits (211), Expect = 1.300e-15 Identity = 54/108 (50.00%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 76 RSGGFASASSTRVEMVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
R G +A + + A A V Q+Q L+FL AETA + VGTP YVYD SL+A AEA L FPNA+GLTVRYAMK+ PN AVLQLF+ L S+ ++ R
Sbjct: 34 RGGAYARRGAVAALTMTATAPVSQQQYA-LRFLDAETALQVQQKVGTPCYVYDMKSLRAQAEAMLKFPNAFGLTVRYAMKAAPNVAVLQLFKKMGLHIDASSGYEIRR 140
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A8G0V6J3_9BACT (Diaminopimelate decarboxylase n=1 Tax=Ruficoccus sp. ZRK36 TaxID=2866311 RepID=A0A8G0V6J3_9BACT) HSP 1 Score: 85.1 bits (209), Expect = 1.940e-15 Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 154 LETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
+ETLKFLT E AR GTP YVYD ASLK +AEA LAFPNA+GLTVR+AMK+ PN A+L++F L S+ +V R
Sbjct: 1 METLKFLTPELARQIAADYGTPVYVYDEASLKRHAEAALAFPNAFGLTVRFAMKASPNAAILRVFHRLGLHIDASSGFEVRR 82
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A7S0GTX5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GTX5_MICPS) HSP 1 Score: 85.1 bits (209), Expect = 2.410e-15 Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 1
Query: 133 AAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
AA G +E+L+FL E A+A + A GTPAYVYD A L+ AE LAFPNA+GLTVRYAMK+ PN A+L++F+ L+ S+ +V R
Sbjct: 52 AAAGDAAVESLQFLKPEEAKAVRDAFGTPAYVYDLARLEEQAEKALAFPNAFGLTVRYAMKASPNAAILKVFRKKGLNIDASSGYEVRR 140
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Match: A0A7S1XR44_9STRA (Hypothetical protein (Fragment) n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XR44_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 3.480e-15 Identity = 47/82 (57.32%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 154 LETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACLAFPNAYGLTVRYAMKSLPNKAVLQLFQG*ELDFQHSNRTDVCR 399
+ETL+FL ETAR VGTPAYVY A L A+ LAFPNAYGLT RYAMKS PN A+LQLF L S+ +V R
Sbjct: 50 METLRFLNPETAREIAAKVGTPAYVYSEAELTTQAKTALAFPNAYGLTARYAMKSSPNAAILQLFDKLGLHIDASSGFEVRR 131 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14287.3326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14287.3326.1 >prot_Ecto-sp13_S_contig14287.3326.1 ID=prot_Ecto-sp13_S_contig14287.3326.1|Name=mRNA_Ecto-sp13_S_contig14287.3326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp MVAAEAAVGQKQLETLKFLTAETARATKVAVGTPAYVYDAASLKANAEACback to top mRNA from alignment at Ecto-sp13_S_contig14287:1433..3137+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14287.3326.1 ID=mRNA_Ecto-sp13_S_contig14287.3326.1|Name=mRNA_Ecto-sp13_S_contig14287.3326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14287:1433..3137+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14287:1433..3137+ >mRNA_Ecto-sp13_S_contig14287.3326.1 ID=mRNA_Ecto-sp13_S_contig14287.3326.1|Name=mRNA_Ecto-sp13_S_contig14287.3326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14287:1433..3137+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |