prot_Ecto-sp13_S_contig14278.3320.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14278.3320.1
Unique Nameprot_Ecto-sp13_S_contig14278.3320.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length57
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14278.3320.1 vs. uniprot
Match: D7G784_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G784_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.640e-22
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    1 MGGGTASKASSPSTPSSNAGVSKTVKAGLLIILCLQNAVYTMHRRYRSRTGCHTLQ 56
            MGGGTASKASSPS  SSNAGVSKTVKAGLL++LCLQNAVYTM RRYR+RT C  +Q
Sbjct:    1 MGGGTASKASSPSASSSNAGVSKTVKAGLLVVLCLQNAVYTMLRRYRARTSCRMVQ 56
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BLAST of mRNA_Ecto-sp13_S_contig14278.3320.1 vs. uniprot
Match: A0A6H5JE24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE24_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.680e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0 
Query:    1 MGGGTASKASSPSTPSSNAGVSKTVKAGLLIILCLQNAVYTMHRRY 46
            MGGGTASKASSPST SSNAGVSKTVKAGLLI+LCLQNAVYTMHRRY
Sbjct:   32 MGGGTASKASSPSTSSSNAGVSKTVKAGLLIVLCLQNAVYTMHRRY 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14278.3320.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G784_ECTSI5.640e-2282.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE24_9PHAE1.680e-1795.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 41..56
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14278contigEcto-sp13_S_contig14278:2350..2671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14278.3320.1mRNA_Ecto-sp13_S_contig14278.3320.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14278 2350..2739 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14278.3320.1 ID=prot_Ecto-sp13_S_contig14278.3320.1|Name=mRNA_Ecto-sp13_S_contig14278.3320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MGGGTASKASSPSTPSSNAGVSKTVKAGLLIILCLQNAVYTMHRRYRSRT
GCHTLQ*
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