mRNA_Ecto-sp13_S_contig14278.3320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14278.3320.1
Unique NamemRNA_Ecto-sp13_S_contig14278.3320.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14278.3320.1 vs. uniprot
Match: D7G784_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G784_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.810e-29
Identity = 56/79 (70.89%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    1 MGGGTASKASSPSTPSSNAGVSKTVKAGLLIILCLQNAVYTMHRRYRSRTGCHTLQ*QSVGLDDWGRKVGRKLSGCTRH 237
            MGGGTASKASSPS  SSNAGVSKTVKAGLL++LCLQNAVYTM RRYR+RT C  +Q QSV LDDWG +   ++    RH
Sbjct:    1 MGGGTASKASSPSASSSNAGVSKTVKAGLLVVLCLQNAVYTMLRRYRARTSCRMVQQQSVRLDDWGPRSREEVVTLHRH 79
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BLAST of mRNA_Ecto-sp13_S_contig14278.3320.1 vs. uniprot
Match: A0A6H5JE24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE24_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.150e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 MGGGTASKASSPSTPSSNAGVSKTVKAGLLIILCLQNAVYTMHRRY 138
            MGGGTASKASSPST SSNAGVSKTVKAGLLI+LCLQNAVYTMHRRY
Sbjct:   32 MGGGTASKASSPSTSSSNAGVSKTVKAGLLIVLCLQNAVYTMHRRY 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14278.3320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G784_ECTSI4.810e-2970.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE24_9PHAE4.150e-1795.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14278contigEcto-sp13_S_contig14278:2350..2739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size239
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010700.1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462763.4235964-CDS-Ecto-sp13_S_contig14278:2349..24911681462763.4235964-CDS-Ecto-sp13_S_contig14278:2349..2491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14278 2350..2491 +
1681462763.437885-CDS-Ecto-sp13_S_contig14278:2642..26711681462763.437885-CDS-Ecto-sp13_S_contig14278:2642..2671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14278 2643..2671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462763.4474385-UTR-Ecto-sp13_S_contig14278:2671..27391681462763.4474385-UTR-Ecto-sp13_S_contig14278:2671..2739Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14278 2672..2739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14278.3320.1prot_Ecto-sp13_S_contig14278.3320.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14278 2350..2671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14278.3320.1

>prot_Ecto-sp13_S_contig14278.3320.1 ID=prot_Ecto-sp13_S_contig14278.3320.1|Name=mRNA_Ecto-sp13_S_contig14278.3320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MGGGTASKASSPSTPSSNAGVSKTVKAGLLIILCLQNAVYTMHRRYRSRT
GCHTLQ*
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mRNA from alignment at Ecto-sp13_S_contig14278:2350..2739+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14278.3320.1 ID=mRNA_Ecto-sp13_S_contig14278.3320.1|Name=mRNA_Ecto-sp13_S_contig14278.3320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14278:2350..2739+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGGTGGGACCGCAAGCAAGGCATCTTCCCCTTCGACCCCCAGCAG
CAATGCAGGGGTGTCCAAGACGGTGAAGGCGGGGCTGCTCATCATCCTGT
GCCTGCAGAACGCCGTGTACACGATGCACCGGAGATACAGGTGTGATGGA
GTTTGAGAGGCGCCGACGAGATTTTACGATTTTGACCCCCGAGCAGCCCG
ACGAGAACGTTTTCTCCCATGCGCAGCAGGAGTGAGAAACAAAAAGTACC
GGCGTGGGGGCGGCATACATGTCCTTCCGCTCCCATAGCAGAGCTCGCAC
GGGCTGCCACACGTTGCAATAGCAGTCAGTCGGGCTTGACGATTGGGGCC
GAAAAGTAGGGAGGAAGTTGTCAGGCTGCACCCGGCACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14278:2350..2739+

>mRNA_Ecto-sp13_S_contig14278.3320.1 ID=mRNA_Ecto-sp13_S_contig14278.3320.1|Name=mRNA_Ecto-sp13_S_contig14278.3320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14278:2350..2739+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGGTGGGACCGCAAGCAAGGCATCTTCCCCTTCGACCCCCAGCAG
CAATGCAGGGGTGTCCAAGACGGTGAAGGCGGGGCTGCTCATCATCCTGT
GCCTGCAGAACGCCGTGTACACGATGCACCGGAGATACAGGTCTCGCACG
GGCTGCCACACGTTGCAATAG
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