mRNA_Ecto-sp13_S_contig14275.3319.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14275.3319.1
Unique NamemRNA_Ecto-sp13_S_contig14275.3319.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14275.3319.1 vs. uniprot
Match: A0A6H5KL36_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 636 bits (1640), Expect = 4.460e-205
Identity = 385/475 (81.05%), Postives = 398/475 (83.79%), Query Frame = 1 
Query:    1 GGGDSLPATLSAAMTATSIVVEHVSKRTRERLLLEKGAGAGKRLSGPVQITLEDLQTSPSPDRMSLGEGGEDAGSAKSISPGATAAAGARFNRRKMCWE----GFEEPDLTGFDTTDSESESLPRAPGSSRXXXXXXXPSLSPPRKGGGSRASMTVDERVKSEERGPASSSTLLQGLDVTAAASGAADDAASTGGGEGDALRPSGDGGGGLEIDDGKASPGEGEGTADVVVGSEEGDGGRHGEERGSDSPSAAAAVAPMQASADAAGERRGSTAASEVMVSPVPLAAEPAGLGRMRLGGVDEGEEGNGSSRGGGNAGRELPLSLSDSRHSGGDFSDDVSDWDRSLRSLTSPPPGSPDLLVEGAPDPSQVPLMRRLSTAMLMAPTALKGPDEGVDAVAGEPIGGGKVGCLRRPSFGPVLFTPAGLAEQAMATMISCREDTTAPPPAAGAPGLSPPSAT--------EPPSRHASPR 1389
            GGGDSLPATLSAAMTATSI V+HVSKRTRERLLLEKGAGAGKRLSGPVQITLEDLQTSPSPDR+SLGEGGEDAG AKSISPGATAAAGARFNR+KMCWE    GFEEPDLTGFDTTDSESESLPRAP SSR  XXXXXPSLSPPRKGG SRASMTVDERV+SEERGPAS+   LQGLDV AAASG                        GLEIDD K  PGE  G   VV GSE+GDGGR G+E GSDSPS AA   P+QA A AAG RRGS+AASEVM+SPVP AAEPAGLG MRLGGVDE E+G+GSSRGGGNAGRE PLSLSDSRHSGGDFSDDVSDWDRSLRSLTSPPPGSPDLLVEGAPDPSQVPLMRRLSTAML+AP ALKG DEGVDAV GEPIGGGKVGCLRRPSFGPVLFTPAGLAEQAMATMISC EDTTAP PAAG PGLSPPS          EP SRHASPR
Sbjct:  958 GGGDSLPATLSAAMTATSIAVKHVSKRTRERLLLEKGAGAGKRLSGPVQITLEDLQTSPSPDRVSLGEGGEDAGCAKSISPGATAAAGARFNRQKMCWEASTTGFEEPDLTGFDTTDSESESLPRAPRSSRSRXXXXXPSLSPPRKGG-SRASMTVDERVESEERGPASARASLQGLDV-AAASGXXXXXXXXXXXXXXXXXXXXXXXXGLEIDDEKDWPGEDGGATSVVEGSEQGDGGRRGKEWGSDSPSRAAV--PVQALAGAAGARRGSSAASEVMMSPVPPAAEPAGLGPMRLGGVDEEEKGDGSSRGGGNAGREPPLSLSDSRHSGGDFSDDVSDWDRSLRSLTSPPPGSPDLLVEGAPDPSQVPLMRRLSTAMLIAPKALKGTDEGVDAVTGEPIGGGKVGCLRRPSFGPVLFTPAGLAEQAMATMISCPEDTTAPLPAAGTPGLSPPSXXXXXXXXXXEPSSRHASPR 1428
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BLAST of mRNA_Ecto-sp13_S_contig14275.3319.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 632 bits (1631), Expect = 1.490e-203
Identity = 373/459 (81.26%), Postives = 384/459 (83.66%), Query Frame = 1 
Query:    1 GGGDSLPATLSAAMTATSIVVEHVSKRTRERLLLEKGAGAGKRLSGPVQITLEDLQTSPSPDRMSLGEGGEDAGSAKSISPGATAAAGARFNRRKMCWEGFEEPDLTGFDTTDSESESLPRAPGSSRXXXXXXXPSLSPPRKGGGSRASMTVDERVKSEERGPASSSTLLQGLDVTAAASGAADDA-ASTGGGEGDALRPSGDGGGGLEIDDGKASPGEGEGTADVVVGSEEGDGGRHGEERGSDSPSAAAAVAP-------MQASADAAGERRGSTAASEVMVSPVPLAAEPAGLGRMRLGGVDEGEEGNGSSRGGGNAGRELPLSLSDSRHSGGDFSDDVSDWDRSLRSLTSPPPGSPDLLVEGAPDPSQVPLMRRLSTAMLMAPTALKGPDEGVDAVAGEPIGGGKVGCLRRPSFGPVLFTPAGLAEQAMATMISCREDTTAPPPAAGAPGLSPPS 1353
            GGGDSLPATLSAAMTATSI VEHV KRTRERLLLEKGAGAGKRLSGPVQITLEDLQTSPSPDRMSLG GGEDAGSAKSISPG+TAAAGARFNRRKMCWEGFEEPDLTGFDTTDSESESLPRAPGSSR  XXXX P LSPPRKGG SRASMTV+ERV SEERGPASSS  LQGLD+ AAASG ADDA A+TGGG+ D LRPSGDGGGGLEIDD KASPGE                                           +QA A AAGERRGS+ ASEVMVSPVP AAEPAGLG MR+GG DE E+G+GSSRG GNAGRE PLSLSDSRHSGGD SDDVSDWDRSLRSLTSPPPGSPDLLVEGAPDPSQVPLMRRLSTAMLMAP ALKGPDEG+DAVAGEPIGGGK GCL RPSFGPVLFTPAGLAEQAMATMISC EDTTA PPAAGAPGLSPPS
Sbjct: 1094 GGGDSLPATLSAAMTATSIAVEHVRKRTRERLLLEKGAGAGKRLSGPVQITLEDLQTSPSPDRMSLGAGGEDAGSAKSISPGSTAAAGARFNRRKMCWEGFEEPDLTGFDTTDSESESLPRAPGSSRSRXXXXSPPLSPPRKGG-SRASMTVEERVDSEERGPASSSASLQGLDLAAAASGTADDAVATTGGGDCDTLRPSGDGGGGLEIDDEKASPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQALAGAAGERRGSSVASEVMVSPVPAAAEPAGLGPMRIGGADEEEKGDGSSRGSGNAGREAPLSLSDSRHSGGDLSDDVSDWDRSLRSLTSPPPGSPDLLVEGAPDPSQVPLMRRLSTAMLMAPKALKGPDEGLDAVAGEPIGGGKAGCLIRPSFGPVLFTPAGLAEQAMATMISCPEDTTASPPAAGAPGLSPPS 1551
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14275.3319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL36_9PHAE4.460e-20581.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZY2_ECTSI1.490e-20381.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14275contigEcto-sp13_S_contig14275:1986..4456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1412
Hectar predicted targeting categoryother localisation
Exons3
Cds size1410
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462763.3754585-CDS-Ecto-sp13_S_contig14275:1985..30981681462763.3754585-CDS-Ecto-sp13_S_contig14275:1985..3098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14275 1986..3098 -
1681462763.3842545-CDS-Ecto-sp13_S_contig14275:3750..38791681462763.3842545-CDS-Ecto-sp13_S_contig14275:3750..3879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14275 3751..3879 -
1681462763.395061-CDS-Ecto-sp13_S_contig14275:4288..44561681462763.395061-CDS-Ecto-sp13_S_contig14275:4288..4456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14275 4289..4456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14275.3319.1prot_Ecto-sp13_S_contig14275.3319.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14275 1986..4456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14275.3319.1

>prot_Ecto-sp13_S_contig14275.3319.1 ID=prot_Ecto-sp13_S_contig14275.3319.1|Name=mRNA_Ecto-sp13_S_contig14275.3319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=470bp
GGGDSLPATLSAAMTATSIVVEHVSKRTRERLLLEKGAGAGKRLSGPVQI
TLEDLQTSPSPDRMSLGEGGEDAGSAKSISPGATAAAGARFNRRKMCWEG
FEEPDLTGFDTTDSESESLPRAPGSSRSRSRSRSPSLSPPRKGGGSRASM
TVDERVKSEERGPASSSTLLQGLDVTAAASGAADDAASTGGGEGDALRPS
GDGGGGLEIDDGKASPGEGEGTADVVVGSEEGDGGRHGEERGSDSPSAAA
AVAPMQASADAAGERRGSTAASEVMVSPVPLAAEPAGLGRMRLGGVDEGE
EGNGSSRGGGNAGRELPLSLSDSRHSGGDFSDDVSDWDRSLRSLTSPPPG
SPDLLVEGAPDPSQVPLMRRLSTAMLMAPTALKGPDEGVDAVAGEPIGGG
KVGCLRRPSFGPVLFTPAGLAEQAMATMISCREDTTAPPPAAGAPGLSPP
SATEPPSRHASPRAAAQATE
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mRNA from alignment at Ecto-sp13_S_contig14275:1986..4456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14275.3319.1 ID=mRNA_Ecto-sp13_S_contig14275.3319.1|Name=mRNA_Ecto-sp13_S_contig14275.3319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14275:1986..4456- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGGCGACTCGCTGCCGGCGACGCTCTCGGCGGCGATGACGGCCAC
GAGCATCGTGGTCGAGCACGTGAGCAAGCGCACCCGCGAGAGGCTGCTGC
TGGAGAAGGGCGCGGGGGCCGGGAAGAGACTTTCGGGGCCGGTGCAGATC
ACGCTCGAAGACCTCCAGGTGCGGTGATGGGATTGGTGCCCCGCTATTCA
GCGGTCTAGGCAGGGTTCTTTTCTCTCAGAAACCATACTGGATAATGTCT
AGAATGGAGTAAGTGTGGGTTCCAGTCTGCGTGCCCCCTGTCTAGTCTCC
TCACGTGAGCAGTTTTTAAGCTACTTTTATTTGCTTCAGTCCCCATTGTT
CAGGCACCGTCCTGTCGAGAGAAATATGGGCTCGGATTGTAGCTAGAAAA
CGCAAGAAAATTGGCCAGCAAAGACACAACAGCACAAGAGCTCAGCGGTA
GCTGTTTCGTTGCAGATTGCTCGGCTCAGAGTGCGTCTTTGAAACGAGGT
CGACCTGGAGCTCAAGCGCGTTGTATGTATCTCGCGTGCACCGTTGTCTT
GTTGTACGTTGCTTTTATGTCGCGCAGACTTCGCCTTCGCCGGATCGGAT
GTCGCTGGGAGAGGGCGGCGAGGACGCGGGGAGCGCGAAGTCGATATCGC
CGGGAGCGACGGCAGCGGCCGGAGCCCGCTTTAACCGCCGGAAGATGTGC
TGGGAGGCAAGTACAGCGGTAGAGGTCCCTGTATGGCACACACTGCTCCC
AAATCATTCTCAATGCTGTGAGTAGTGCCGGTCCGGTGTAGTACCGGTAA
GTTTCTGGGCAGATACTGGCACTATGCAGGGAACCAACTTTTCCATATGC
AACGTTGCTGAAGGAGAGCAAGAAGGGACCATACAAGTGAACAAGGTGGA
GGGAAGGAATCCAGGTAGAAGTTTGGTTCCTCTTTTTGCCCTTGGCTGTT
GATTGAATCCTGGGTGCGTGCGGATTATTTCTTGCCTCATGAGCCGACAA
CATCTCTCTTGAAGTGAAGTTCACCAAAAGTAGGGCTGAATTGATTCCAT
CCAGAGACGCACATTGATCACTCACATAAGACGACAACATCTGTCTCGAA
GTGAAGTTCACCAAAAGTAGGGCCGAATTGATTCCATCCAGAAACGCACG
TTTTTCACTCACAACAGCCGACAGCGTCTGTCTTGAACTGAATCTCACCA
AGCAGGGCCGAATTGATTCCGTCCAGAAGCGCACCTTGGTCACTCACATC
ACCAACCCTTTTGTATAACGACTACGGCATGCGTTCAACATTAGTACCCC
ATCACCCCCCTTGCCTCGAATCGCACCATTGTGTACACCATGGCCATTTT
GACACCAGGGTTTCGAAGAGCCTGACCTCACGGGCTTCGACACGACCGAC
AGCGAGTCCGAGTCGCTGCCGCGCGCTCCCGGGTCCAGCCGATCCCGCTC
CCGATCACGATCACCGTCTCTGTCCCCGCCACGCAAGGGGGGCGGCAGTC
GCGCGAGTATGACCGTCGACGAGAGGGTGAAAAGCGAGGAACGCGGCCCT
GCTTCATCTTCGACGTTACTCCAAGGGCTTGATGTAACGGCGGCGGCGTC
CGGGGCGGCGGATGATGCCGCTTCTACCGGCGGTGGCGAAGGCGACGCTC
TCCGGCCTTCTGGTGATGGCGGTGGCGGCTTGGAGATCGACGACGGTAAG
GCTTCGCCTGGCGAAGGTGAAGGTACTGCCGATGTGGTTGTAGGCTCGGA
AGAGGGCGACGGCGGGCGGCATGGGGAGGAGCGGGGATCTGACTCGCCGT
CGGCGGCGGCGGCGGTGGCGCCGATGCAAGCATCGGCAGATGCCGCCGGT
GAACGGAGGGGTTCGACAGCGGCTTCCGAGGTGATGGTGTCTCCGGTGCC
GCTGGCGGCGGAGCCTGCGGGGTTGGGCCGGATGAGATTAGGTGGGGTTG
ATGAAGGGGAGGAGGGGAACGGCAGTAGCCGCGGTGGCGGCAACGCGGGG
AGAGAGCTTCCGCTGAGCCTGTCCGACAGCAGGCACAGCGGCGGCGACTT
CAGCGACGACGTGAGCGACTGGGACAGGAGCCTGAGGAGCCTGACAAGCC
CTCCCCCGGGCTCCCCCGACTTGCTTGTCGAAGGCGCTCCCGACCCGTCT
CAGGTGCCTCTCATGCGCCGCCTCTCCACGGCGATGCTCATGGCTCCCAC
AGCTCTAAAGGGCCCCGACGAGGGAGTGGACGCGGTGGCCGGCGAGCCTA
TCGGCGGCGGTAAGGTAGGCTGCTTGAGGAGACCTTCGTTTGGCCCCGTG
CTCTTCACCCCGGCGGGGTTGGCGGAGCAGGCTATGGCGACCATGATCTC
CTGCCGCGAAGACACTACTGCTCCTCCTCCCGCTGCCGGTGCGCCGGGCT
TGTCGCCACCATCGGCGACGGAGCCTCCTTCAAGACACGCGTCCCCGCGC
GCGGCTGCTCAAGCGACAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14275:1986..4456-

>mRNA_Ecto-sp13_S_contig14275.3319.1 ID=mRNA_Ecto-sp13_S_contig14275.3319.1|Name=mRNA_Ecto-sp13_S_contig14275.3319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1410bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14275:1986..4456- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGGCGACTCGCTGCCGGCGACGCTCTCGGCGGCGATGACGGCCAC
GAGCATCGTGGTCGAGCACGTGAGCAAGCGCACCCGCGAGAGGCTGCTGC
TGGAGAAGGGCGCGGGGGCCGGGAAGAGACTTTCGGGGCCGGTGCAGATC
ACGCTCGAAGACCTCCAGACTTCGCCTTCGCCGGATCGGATGTCGCTGGG
AGAGGGCGGCGAGGACGCGGGGAGCGCGAAGTCGATATCGCCGGGAGCGA
CGGCAGCGGCCGGAGCCCGCTTTAACCGCCGGAAGATGTGCTGGGAGGGT
TTCGAAGAGCCTGACCTCACGGGCTTCGACACGACCGACAGCGAGTCCGA
GTCGCTGCCGCGCGCTCCCGGGTCCAGCCGATCCCGCTCCCGATCACGAT
CACCGTCTCTGTCCCCGCCACGCAAGGGGGGCGGCAGTCGCGCGAGTATG
ACCGTCGACGAGAGGGTGAAAAGCGAGGAACGCGGCCCTGCTTCATCTTC
GACGTTACTCCAAGGGCTTGATGTAACGGCGGCGGCGTCCGGGGCGGCGG
ATGATGCCGCTTCTACCGGCGGTGGCGAAGGCGACGCTCTCCGGCCTTCT
GGTGATGGCGGTGGCGGCTTGGAGATCGACGACGGTAAGGCTTCGCCTGG
CGAAGGTGAAGGTACTGCCGATGTGGTTGTAGGCTCGGAAGAGGGCGACG
GCGGGCGGCATGGGGAGGAGCGGGGATCTGACTCGCCGTCGGCGGCGGCG
GCGGTGGCGCCGATGCAAGCATCGGCAGATGCCGCCGGTGAACGGAGGGG
TTCGACAGCGGCTTCCGAGGTGATGGTGTCTCCGGTGCCGCTGGCGGCGG
AGCCTGCGGGGTTGGGCCGGATGAGATTAGGTGGGGTTGATGAAGGGGAG
GAGGGGAACGGCAGTAGCCGCGGTGGCGGCAACGCGGGGAGAGAGCTTCC
GCTGAGCCTGTCCGACAGCAGGCACAGCGGCGGCGACTTCAGCGACGACG
TGAGCGACTGGGACAGGAGCCTGAGGAGCCTGACAAGCCCTCCCCCGGGC
TCCCCCGACTTGCTTGTCGAAGGCGCTCCCGACCCGTCTCAGGTGCCTCT
CATGCGCCGCCTCTCCACGGCGATGCTCATGGCTCCCACAGCTCTAAAGG
GCCCCGACGAGGGAGTGGACGCGGTGGCCGGCGAGCCTATCGGCGGCGGT
AAGGTAGGCTGCTTGAGGAGACCTTCGTTTGGCCCCGTGCTCTTCACCCC
GGCGGGGTTGGCGGAGCAGGCTATGGCGACCATGATCTCCTGCCGCGAAG
ACACTACTGCTCCTCCTCCCGCTGCCGGTGCGCCGGGCTTGTCGCCACCA
TCGGCGACGGAGCCTCCTTCAAGACACGCGTCCCCGCGCGCGGCTGCTCA
AGCGACAGAG
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