mRNA_Ecto-sp13_S_contig1427.3316.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1427.3316.1
Unique NamemRNA_Ecto-sp13_S_contig1427.3316.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1427.3316.1 vs. uniprot
Match: D8LLP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP7_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 2.690e-64
Identity = 119/161 (73.91%), Postives = 124/161 (77.02%), Query Frame = 1 
Query:    1 MWELGSKLSLEESKGCSSRTGVENGIAIERVAATTTHNLLHLLVALEMDKDAAVLEHAATMALARLAESLRLRSKSTHYRFLRDESCRAAACCRAFLVFVSLLKKVVDEEGAGGSAGGGLPPSLAGRLKEETDAVAAASAGLPEERAAVLRDIAAAVEGRW 483
            MWELGS+LSLEE KGCSS T  +NGIAIERVAATTTHNLLHLLVALEMDKDAAVLEHAAT+ALARLAESLR  +KSTHYRFLRDES RA                              LPPSLAGRL+EETDAVAAASAGLPEERAAVLRDIAAAVEGRW
Sbjct:    1 MWELGSELSLEEPKGCSSTTVADNGIAIERVAATTTHNLLHLLVALEMDKDAAVLEHAATVALARLAESLR--AKSTHYRFLRDESRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPSLAGRLEEETDAVAAASAGLPEERAAVLRDIAAAVEGRW 159
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BLAST of mRNA_Ecto-sp13_S_contig1427.3316.1 vs. uniprot
Match: A0A6H5KWN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN9_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 5.430e-47
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:    1 MWELGSKLSLEESKGCSSRTGVENGIAIERVAATTTHNLLHLLVALEMDKDAAVLEHAATMALARLAESLRLRSKSTHYRFLRDESCRAAACCRAFLVFVSLLKKVVD 324
            MWELGS+LSL ES+GC  RT V+NGIAIERVAA TTHNLLHL+VALEMDK+AAVLEHAAT+A ARLAESLR  SKSTHYRFLRDES RAAACCRAFLVFVSLLKKVVD
Sbjct:  518 MWELGSELSLGESEGCGKRTVVKNGIAIERVAANTTHNLLHLVVALEMDKNAAVLEHAATVAPARLAESLR--SKSTHYRFLRDESRRAAACCRAFLVFVSLLKKVVD 623
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1427.3316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLP7_ECTSI2.690e-6473.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWN9_9PHAE5.430e-4786.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1427contigEcto-sp13_S_contig1427:15760..16253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_004950.1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462763.189166-CDS-Ecto-sp13_S_contig1427:15759..159711681462763.189166-CDS-Ecto-sp13_S_contig1427:15759..15971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1427 15760..15971 +
1681462763.2006068-CDS-Ecto-sp13_S_contig1427:15982..162531681462763.2006068-CDS-Ecto-sp13_S_contig1427:15982..16253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1427 15983..16253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1427.3316.1prot_Ecto-sp13_S_contig1427.3316.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1427 15760..16253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1427.3316.1

>prot_Ecto-sp13_S_contig1427.3316.1 ID=prot_Ecto-sp13_S_contig1427.3316.1|Name=mRNA_Ecto-sp13_S_contig1427.3316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MWELGSKLSLEESKGCSSRTGVENGIAIERVAATTTHNLLHLLVALEMDK
DAAVLEHAATMALARLAESLRLRSKSTHYRFLRDESCRAAACCRAFLVFV
SLLKKVVDEEGAGGSAGGGLPPSLAGRLKEETDAVAAASAGLPEERAAVL
RDIAAAVEGRW
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mRNA from alignment at Ecto-sp13_S_contig1427:15760..16253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1427.3316.1 ID=mRNA_Ecto-sp13_S_contig1427.3316.1|Name=mRNA_Ecto-sp13_S_contig1427.3316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=494bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1427:15760..16253+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGGAGTTGGGGTCTAAGTTGAGCCTCGAGGAGTCAAAGGGGTGCAG
CAGCAGGACCGGGGTGGAGAACGGCATCGCTATCGAACGCGTCGCGGCGA
CCACTACGCACAACCTCCTTCACCTCCTGGTCGCTCTTGAGATGGACAAG
GACGCCGCCGTGCTGGAGCATGCGGCGACGATGGCCCTGGCGAGGCTCGC
GGAGAGCCTACGGTCGAGGAGAGCCTACGGTCGAAGAGCACCCACTACAG
GTTCCTCCGTGACGAGTCGTGCCGCGCGGCGGCCTGTTGCCGCGCGTTCT
TAGTTTTCGTGAGCCTCCTCAAGAAGGTGGTCGACGAGGAAGGGGCGGGT
GGCAGCGCGGGGGGGGGGCTGCCGCCTTCGCTGGCCGGGCGCCTGAAAGA
GGAGACCGACGCGGTGGCGGCGGCGTCTGCGGGACTTCCGGAGGAGAGGG
CAGCAGTGCTGCGCGACATCGCTGCGGCTGTGGAGGGCCGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1427:15760..16253+

>mRNA_Ecto-sp13_S_contig1427.3316.1 ID=mRNA_Ecto-sp13_S_contig1427.3316.1|Name=mRNA_Ecto-sp13_S_contig1427.3316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1427:15760..16253+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGGAGTTGGGGTCTAAGTTGAGCCTCGAGGAGTCAAAGGGGTGCAG
CAGCAGGACCGGGGTGGAGAACGGCATCGCTATCGAACGCGTCGCGGCGA
CCACTACGCACAACCTCCTTCACCTCCTGGTCGCTCTTGAGATGGACAAG
GACGCCGCCGTGCTGGAGCATGCGGCGACGATGGCCCTGGCGAGGCTCGC
GGAGAGCCTACGCCTACGGTCGAAGAGCACCCACTACAGGTTCCTCCGTG
ACGAGTCGTGCCGCGCGGCGGCCTGTTGCCGCGCGTTCTTAGTTTTCGTG
AGCCTCCTCAAGAAGGTGGTCGACGAGGAAGGGGCGGGTGGCAGCGCGGG
GGGGGGGCTGCCGCCTTCGCTGGCCGGGCGCCTGAAAGAGGAGACCGACG
CGGTGGCGGCGGCGTCTGCGGGACTTCCGGAGGAGAGGGCAGCAGTGCTG
CGCGACATCGCTGCGGCTGTGGAGGGCCGGTGG
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