mRNA_Ecto-sp13_S_contig14269.3312.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14269.3312.1
Unique NamemRNA_Ecto-sp13_S_contig14269.3312.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14269.3312.1 vs. uniprot
Match: A0A6H5K0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V0_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 1.680e-113
Identity = 183/220 (83.18%), Postives = 194/220 (88.18%), Query Frame = 3 
Query:  243 PEQATPVLFWSAMKRREPNTGIP*TVGCEAETPLFLEAHRLTLNVERSLQCRNCKPNCPINGPRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLGFKVQSWSMADEVVRGTFDSISSLLRIRAVTPRKANSMACRSRDASPHETAAEE*AAARSVAPSSVEEEESVGSRDVEEATVGSEGRVQRTPTSGEGDAGTEAATEAAISR 902
            P QA   +F SAMKRREPN GIP TVGCEAETPL L AHRL+L+VERSLQCRNCKPNCPINGPRHSWEFMR ESEATEILGVDAEL+VNFECVNCHSIHLGVP PAKG+G +VQSWSMADEVVRGTFDSISS LR+RAV+PRKANS+A RSRDASPHE AAE  AAARSVAPSSVEEEESVGSRDV+EATVG EG +Q  PTS EGD GTEA   AAISR
Sbjct:  196 PPQA---VFRSAMKRREPNAGIPWTVGCEAETPLLLNAHRLSLDVERSLQCRNCKPNCPINGPRHSWEFMRGESEATEILGVDAELRVNFECVNCHSIHLGVPFPAKGVGSEVQSWSMADEVVRGTFDSISSWLRVRAVSPRKANSIASRSRDASPHEAAAEGEAAARSVAPSSVEEEESVGSRDVDEATVGREGGMQGAPTSREGDGGTEADNGAAISR 412
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BLAST of mRNA_Ecto-sp13_S_contig14269.3312.1 vs. uniprot
Match: D8LNQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 8.660e-83
Identity = 130/154 (84.42%), Postives = 136/154 (88.31%), Query Frame = 3 
Query:  264 LFWSAMKRREPNTGIP*TVGCEAETPLFLEAHRLTLNVERSLQCRNCKPNCPINGPRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLGFKVQSWSMADEVVRGTFDSISSLLRIRAVTPRKANSMACRSRDASPHETAA 725
             FWSAMKRREPNTGIP TVGCEAETPL LEAHRLTL++ERSLQCRNCKPNCPINGPRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLG++VQSWSMADEVVRGTFDSISS LR+RA  P  A     R R  +P E AA
Sbjct:  266 FFWSAMKRREPNTGIPWTVGCEAETPLLLEAHRLTLDIERSLQCRNCKPNCPINGPRHSWEFMRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLGYEVQSWSMADEVVRGTFDSISSWLRVRA-GPSSATRGGRRQRQPAPPEKAA 418
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BLAST of mRNA_Ecto-sp13_S_contig14269.3312.1 vs. uniprot
Match: A0A6H5KB44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB44_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.990e-35
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:    1 VSTPTWGYFLNLFQLSRLLDLPADDLRAVLQPPCARKSTIEHELFLSTFGISRGWHAGKPAWHLLGCGHVVAL 219
            VSTPTWGYFLNLF+LSR+LDLPADDLRA+LQPPCARKSTIEHELFLSTFGI  G H GKPAWHLLGCG    L
Sbjct:  113 VSTPTWGYFLNLFELSRVLDLPADDLRAMLQPPCARKSTIEHELFLSTFGIIPGCHDGKPAWHLLGCGRCQQL 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14269.3312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K0V0_9PHAE1.680e-11383.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ4_ECTSI8.660e-8384.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB44_9PHAE1.990e-3584.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14269contigEcto-sp13_S_contig14269:2760..3947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size903
Hectar predicted targeting categoryother localisation
Exons2
Cds size285
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.8842893-UTR-Ecto-sp13_S_contig14269:2759..29281681462762.8842893-UTR-Ecto-sp13_S_contig14269:2759..2928Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14269 2760..2928 -
1681462762.9141817-UTR-Ecto-sp13_S_contig14269:3213..33911681462762.9141817-UTR-Ecto-sp13_S_contig14269:3213..3391Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14269 3214..3391 -
1681462762.9256952-UTR-Ecto-sp13_S_contig14269:3676..39471681462762.9256952-UTR-Ecto-sp13_S_contig14269:3676..3947Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14269 3677..3947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.8961964-CDS-Ecto-sp13_S_contig14269:2928..32131681462762.8961964-CDS-Ecto-sp13_S_contig14269:2928..3213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14269 2929..3213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14269.3312.1prot_Ecto-sp13_S_contig14269.3312.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14269 2929..3213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14269.3312.1

>prot_Ecto-sp13_S_contig14269.3312.1 ID=prot_Ecto-sp13_S_contig14269.3312.1|Name=mRNA_Ecto-sp13_S_contig14269.3312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MRCESEATEILGVDAELKVNFECVNCHSIHLGVPLPAKGLGFKVQSWSMA
DEVVRGTFDSISSLLRIRAVTPRKANSMACRSRDASPHETAAEE*
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mRNA from alignment at Ecto-sp13_S_contig14269:2760..3947-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14269.3312.1 ID=mRNA_Ecto-sp13_S_contig14269.3312.1|Name=mRNA_Ecto-sp13_S_contig14269.3312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1188bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14269:2760..3947- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCCACTCCAACATGGGGGTACTTCTTGAACTTGTTCCAGTTGTCAAG
ACTCCTAGATCTGCCAGCGGATGATCTTCGCGCCGTGCTGCAGCCTCCAT
GTGCCCGAAAGTCTACGATCGAGCATGAACTGTTCCTTTCGACGTTCGGC
ATTTCCCGGGGGTGGCATGCCGGGAAGCCCGCCTGGCATTTGCTTGGATG
TGGGCACGTCGTCGCGCTAGGGGAAGATGCGTGCATGGAACTCCTGAGCA
GGCCACCCCAGTCCTTTTTTGGTGAGTTGGTAATTCGTCAGTGTCGATGG
ATGCATTTTACAAGTCCAAGTCAGCCCTCTATAGGGTACTAAACGCTGTG
CCTCCACGTACTGCTGTAATGCTGCTGTGTTGATGATGCCAAGTCGGCTT
ACTATCCCACCCCATCTGTTCAACCACCCACCCACCACACCCACTCCACA
CCAACTCCTGTATGCCTTTCCTCAATCTATGTTCCGGTGCCCCGCTAGTA
GTACCCGACTTGCCACTCGGATTTGACTCTTGTTTATCTTGTGATTTTGC
CTGCAGGAGTGCGATGAAGCGGAGAGAACCAAACACCGGTATTCCCTGAA
CTGTCGGCTGCGAGGCAGAGACACCTCTATTCCTAGAAGCACATCGCCTT
ACCCTAAATGTAGAGAGGTCCCTGCAGTGTAGAAACTGCAAACCAAACTG
CCCGATCAATGGGCCACGTCATAGTTGGGAGTTCATGCGGTGCGAGTCCG
AGGCGACGGAAATCCTAGGGGTAGACGCCGAGCTCAAAGTCAACTTTGAG
TGCGTCAACTGCCACTCGATACACCTTGGGGTGCCTTTGCCTGCGAAGGG
GTTGGGTTTTAAAGTCCAATCGTGGTCGATGGCGGATGAGGTTGTGCGTG
GGACTTTTGATAGTATCTCCAGTTTGCTTCGGATACGTGCAGTAACCCCC
AGAAAGGCGAACAGTATGGCGTGTCGTAGTAGAGATGCTTCGCCACACGA
AACAGCTGCGGAGGAGTAGGCCGCTGCTCGTTCAGTGGCTCCGAGCAGCG
TGGAGGAGGAAGAATCCGTCGGATCCAGGGACGTGGAAGAGGCGACGGTG
GGGAGTGAGGGGAGGGTGCAGCGGACACCCACATCCGGAGAAGGGGACGC
GGGCACAGAAGCAGCCACTGAGGCGGCTATTAGTCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14269:2760..3947-

>mRNA_Ecto-sp13_S_contig14269.3312.1 ID=mRNA_Ecto-sp13_S_contig14269.3312.1|Name=mRNA_Ecto-sp13_S_contig14269.3312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14269:2760..3947- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTGCGAGTCCGAGGCGACGGAAATCCTAGGGGTAGACGCCGAGCT
CAAAGTCAACTTTGAGTGCGTCAACTGCCACTCGATACACCTTGGGGTGC
CTTTGCCTGCGAAGGGGTTGGGTTTTAAAGTCCAATCGTGGTCGATGGCG
GATGAGGTTGTGCGTGGGACTTTTGATAGTATCTCCAGTTTGCTTCGGAT
ACGTGCAGTAACCCCCAGAAAGGCGAACAGTATGGCGTGTCGTAGTAGAG
ATGCTTCGCCACACGAAACAGCTGCGGAGGAGTAG
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