mRNA_Ecto-sp13_S_contig14265.3311.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14265.3311.1
Unique NamemRNA_Ecto-sp13_S_contig14265.3311.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: D8LC77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC77_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 4.390e-96
Identity = 154/166 (92.77%), Postives = 163/166 (98.19%), Query Frame = 1
Query:    1 QISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEAADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAATHATAEETATVERVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAGLISFRP 498
            +ISEKPRLAAMLTDPRFSKAM+LMSTSPKDALGMFESSAEARESF ELMSLLSKHFTA+G+AADEKAAAEEADR+RVADGPLAQEALRRAAEGVGVAAT ATAEETATV++VLQQPEL+ELLMDPGMQRVLQECG PQELARYMRHPEFGPKLQ+MAKAGLISFRP
Sbjct:  184 KISEKPRLAAMLTDPRFSKAMELMSTSPKDALGMFESSAEARESFTELMSLLSKHFTAMGDAADEKAAAEEADRRRVADGPLAQEALRRAAEGVGVAATPATAEETATVDKVLQQPELRELLMDPGMQRVLQECGEPQELARYMRHPEFGPKLQLMAKAGLISFRP 349          
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: A0A7S2RZ79_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ79_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.990e-21
Identity = 63/169 (37.28%), Postives = 96/169 (56.80%), Query Frame = 1
Query:    1 QISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEA----ADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAAT---HATAEETATVERVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAGLI 486
            + ++ P LA  L+DPR++ A+Q +  +PK A+  F+   E      E    + +HFT +G+      D   AA          GPLA++A+RRA+E    + +     + EE A V+R++Q  EL+ELLMD G+QRV+ EC  P +L  YMR   +GPKL+ +A AGL+
Sbjct:  225 KFAKNPLLAKGLSDPRYTAAIQELQKNPKQAMEKFQHDPELSAFLNEFCQTMGEHFTKLGDQQQPPVDPATAA--------VHGPLAEDAVRRASERAKQSPSPPPQPSKEEDAQVQRIMQDTELRELLMDSGLQRVMMECQQPGKLQMYMRDKTWGPKLRKLADAGLV 385          
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: A0A835Z085_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z085_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.470e-18
Identity = 58/176 (32.95%), Postives = 82/176 (46.59%), Query Frame = 1
Query:    1 QISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEAADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAATHAT-----------AEETATVERVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAGLISFR 495
            +I+ +P LAA L  PRF++A++LM   P+ A+ +F   A+AR  F EL+ LL  HF  +G    + A                                                  A V R+L    L+ELL+DPGMQ VLQEC  P  L  Y  HPE+GPK++ +A+AGL+  +
Sbjct:   32 KIAARPALAAALQSPRFTRALELMRDDPRAAMALFGGDADARALFTELLGLLGTHFEELGAQTSQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAADADVARILADEGLRELLVDPGMQTVLQECSAPGRLRHYAAHPEWGPKIRRLAQAGLVQIQ 207          
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: A0A6G0XYI5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYI5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.270e-17
Identity = 52/166 (31.33%), Postives = 91/166 (54.82%), Query Frame = 1
Query:    1 QISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEAADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAATHATAEETATVERVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAGLISFRP 498
            ++++ P+L+  L +PRF+ A+Q MST+P  A+  +++  +    F + M+ +  HF  +G+  +EK        +R +   + ++AL+         +   + EE A V+R+L  PEL ++L DP MQ+VL  C  P  L  YM    +GPK++ +A AGL+   P
Sbjct:  124 KLAKDPKLSQALQNPRFTAAIQEMSTNPTAAMLKYQNDPDVGVMFKDFMNFMGHHFEHLGKIEEEK--------ERKSREEIQRDALK---------SMSTSPEEDAQVQRILADPELMDILGDPAMQQVLHACQKPCALRSYMNDAIYGPKIRKLADAGLVQLHP 272          
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: A0A7R9U615_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U615_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.100e-17
Identity = 62/175 (35.43%), Postives = 95/175 (54.29%), Query Frame = 1
Query:    1 QISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEAADEKAAAEEADRKRV---ADGPLA------QEALRRAAEGVGVAATHATAEETATVERVLQQPELKELLMDPGMQRVLQECG-NPQELARYMRHPEFGPKLQVMAKAGLISFR 495
            +I E PRL A +++P F   +  M ++P   L   + S E +E   E M L+ KHF A+G   D K+ A++ ++++V   A GPLA      +EA ++A  G G    H +  E   V+  LQ PE+++LLMD  +QRVL E   NP    R M+ P+   K++ MA  GL+  +
Sbjct:  200 KIQESPRLMAAMSNPAFGALLGRMQSNPSQVLKELKDSPETQELLKEFMVLMGKHFEALGAEDDAKSEAKQEEQRQVEQAARGPLAKKILEEEEAKKKA--GSGSTLDHLSDRERKEVDDHLQNPEVRQLLMDEDVQRVLVEASTNPAAFHRAMQSPDIARKIRRMAHLGLVQIQ 372          
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: A0A067CSB9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CSB9_SAPPC)

HSP 1 Score: 78.6 bits (192), Expect = 1.580e-14
Identity = 52/166 (31.33%), Postives = 81/166 (48.80%), Query Frame = 1
Query:    1 QISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEAADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAATHATAEETATVERVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAGLISFRP 498
            ++++ P+L   L +PRF+ A+Q +ST+P+ A+  ++  A+      + M  +  HF A+G               +VAD   A+   R A E    AA H T +E A VER+L  PEL+            Q C  P  L RY++ P  GPK++ +  AGL+   P
Sbjct:  115 KLAKNPKLCIALQNPRFTAAIQELSTNPEKAMAKYQHDADVSAMLRDFMQFMGAHFEALG---------------KVADADAAKAKQRHALE----AAAH-TPQEQAQVERILGDPELQXXXXXXXXXXXXQRCTAPGVLLRYLQDPIVGPKIRKLEAAGLVQLHP 260          
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: A0A024UTJ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTJ1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.850e-13
Identity = 45/166 (27.11%), Postives = 85/166 (51.20%), Query Frame = 1
Query:    1 QISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEAADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAATHATAEETATVERVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAGLISFRP 498
            ++++ P+L   + +PRF+ A+Q MS++P  A+  ++S       F + +  + +HF  +G+  +EK+             P  ++ ++RAA    + +   T +E   V+RVL  PEL+E           + C  P  L+ +M+ P +GPK+Q + +AGL+   P
Sbjct:  123 KLAQNPKLCQAMQNPRFTAAIQEMSSNPTSAMLKYQSDPHFGAIFKDFLEFMGQHFEELGKIEEEKSK------------PPTKQDIQRAA----LTSMPTTPDEEVVVQRVLADPELQEXXXXXXXXXXXRACQQPGVLSTFMKDPVYGPKIQKLVRAGLVQLHP 272          
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: T0Q0K0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q0K0_SAPDV)

HSP 1 Score: 73.2 bits (178), Expect = 1.570e-12
Identity = 46/166 (27.71%), Postives = 77/166 (46.39%), Query Frame = 1
Query:    1 QISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEAADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAATHATAEETATVERVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAGLISFRP 498
            ++++ P+L   L +PRF+ A+Q +ST+P+ A+  ++  A+      + M  +  HF A+G+AAD  AA                    +A++   + A   T +E A V+R+L  P               Q C  P  L RY+  P  GPK++ +  AGL+   P
Sbjct:  114 KLAKNPKLCVALQNPRFTTAIQELSTNPEKAMAKYQHDADVSTMLRDFMQFMGAHFEALGKAADADAA--------------------KASQRHALEAAAQTPQEQAQVQRILSDPXXXXXXXXXXXXXXXQRCTAPGVLLRYLHDPIVGPKIRKLQAAGLVQLHP 259          
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: F0Y4B4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4B4_AURAN)

HSP 1 Score: 74.3 bits (181), Expect = 2.360e-12
Identity = 52/162 (32.10%), Postives = 82/162 (50.62%), Query Frame = 1
Query:    4 ISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEAADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAATHATAEETATVERVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAGLIS 489
            ++E+P LA  + DPR   A++ +   PK     F+   E ++   +   ++  HF  +G A         AD K    GPLA + +  AA+G G A    T EE   V+ VL    L++LLMDP  Q ++Q C +P+E  R M +P+    ++ +A AGL+ 
Sbjct:  186 MAERPALARGMGDPRCQAALEALRKDPKAGAKQFDDDPELKQFLTDFCEVMGGHFEKLGAAXXXXXXT--ADEKEQL-GPLAAKVVEDAAKGQGPAPAK-TPEEIKQVDDVLNNAALRDLLMDPKTQLLMQRCADPREFQRAMMNPDERAIIRKLADAGLVK 343          
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Match: W4GNU8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNU8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.370e-11
Identity = 46/166 (27.71%), Postives = 80/166 (48.19%), Query Frame = 1
Query:    1 QISEKPRLAAMLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIGEAADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAATHATAEETATVERVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAGLISFRP 498
            ++   P+L   + +PRF+ A+Q MST+P  A+  +++  +    F + +  +  HF  +G+  ++ A     D +R A   +++                 + EE A V+R+L  PEL           VL+ C  P  L++YM    FGPK+Q +A+AGL+   P
Sbjct:  130 KLGRNPKLCQAMKNPRFTAAIQEMSTNPTAAILKYQNDPDFGVMFKDFLQFMGHHFEELGKIEEKTAIPTRDDIQRQALTSMSR-----------------SPEEDAVVQRILADPELXXXXXXXXXXXVLRACQVPGVLSKYMNDKVFGPKIQKLARAGLVQLHP 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14265.3311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LC77_ECTSI4.390e-9692.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RZ79_9STRA1.990e-2137.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z085_9STRA5.470e-1832.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0XYI5_9STRA1.270e-1731.33Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7R9U615_9STRA2.100e-1735.43Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A067CSB9_SAPPC1.580e-1431.33Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024UTJ1_9STRA1.850e-1327.11Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
T0Q0K0_SAPDV1.570e-1227.71Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
F0Y4B4_AURAN2.360e-1232.10Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W4GNU8_9STRA1.370e-1127.71Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14265contigEcto-sp13_S_contig14265:2563..3063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score278.1
Seed ortholog evalue2.5e-72
Seed eggNOG ortholog2880.D8LC77
Model size501
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2C2DM@1,2S2RK@2759
Cds size471
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.8396196-UTR-Ecto-sp13_S_contig14265:2562..25921681462762.8396196-UTR-Ecto-sp13_S_contig14265:2562..2592Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14265 2563..2592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.8496358-CDS-Ecto-sp13_S_contig14265:2592..30631681462762.8496358-CDS-Ecto-sp13_S_contig14265:2592..3063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14265 2593..3063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14265.3311.1prot_Ecto-sp13_S_contig14265.3311.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14265 2593..3063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14265.3311.1

>prot_Ecto-sp13_S_contig14265.3311.1 ID=prot_Ecto-sp13_S_contig14265.3311.1|Name=mRNA_Ecto-sp13_S_contig14265.3311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
MLTDPRFSKAMQLMSTSPKDALGMFESSAEARESFAELMSLLSKHFTAIG
EAADEKAAAEEADRKRVADGPLAQEALRRAAEGVGVAATHATAEETATVE
RVLQQPELKELLMDPGMQRVLQECGNPQELARYMRHPEFGPKLQVMAKAG
LISFRP*
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mRNA from alignment at Ecto-sp13_S_contig14265:2563..3063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14265.3311.1 ID=mRNA_Ecto-sp13_S_contig14265.3311.1|Name=mRNA_Ecto-sp13_S_contig14265.3311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14265:2563..3063+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAATCTCCGAGAAGCCACGGCTGGCGGCGATGCTGACCGACCCTCGCTT CTCCAAAGCCATGCAGCTCATGTCTACCTCCCCGAAGGATGCCCTCGGGA TGTTCGAATCTAGCGCCGAGGCCCGAGAGAGCTTCGCCGAGCTCATGTCC CTGCTCTCGAAACATTTCACGGCCATTGGGGAGGCGGCCGACGAGAAGGC GGCGGCCGAGGAGGCGGACCGCAAGAGGGTAGCAGACGGGCCGCTGGCCC AGGAGGCGCTGCGACGGGCGGCGGAAGGGGTCGGCGTGGCGGCGACGCAT GCGACGGCGGAGGAAACCGCTACCGTAGAGAGGGTCCTCCAGCAGCCGGA GCTGAAAGAACTGCTCATGGACCCAGGTATGCAGAGAGTGCTGCAGGAGT GTGGAAACCCCCAAGAGCTGGCGCGGTACATGCGTCACCCGGAGTTTGGA CCCAAGCTGCAGGTCATGGCCAAGGCCGGCTTGATTTCGTTCAGGCCTTG A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14265:2563..3063+

>mRNA_Ecto-sp13_S_contig14265.3311.1 ID=mRNA_Ecto-sp13_S_contig14265.3311.1|Name=mRNA_Ecto-sp13_S_contig14265.3311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14265:2563..3063+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGACCGACCCTCGCTTCTCCAAAGCCATGCAGCTCATGTCTACCTC
CCCGAAGGATGCCCTCGGGATGTTCGAATCTAGCGCCGAGGCCCGAGAGA
GCTTCGCCGAGCTCATGTCCCTGCTCTCGAAACATTTCACGGCCATTGGG
GAGGCGGCCGACGAGAAGGCGGCGGCCGAGGAGGCGGACCGCAAGAGGGT
AGCAGACGGGCCGCTGGCCCAGGAGGCGCTGCGACGGGCGGCGGAAGGGG
TCGGCGTGGCGGCGACGCATGCGACGGCGGAGGAAACCGCTACCGTAGAG
AGGGTCCTCCAGCAGCCGGAGCTGAAAGAACTGCTCATGGACCCAGGTAT
GCAGAGAGTGCTGCAGGAGTGTGGAAACCCCCAAGAGCTGGCGCGGTACA
TGCGTCACCCGGAGTTTGGACCCAAGCTGCAGGTCATGGCCAAGGCCGGC
TTGATTTCGTTCAGGCCTTGA
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