mRNA_Ecto-sp13_S_contig14264.3310.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14264.3310.1
Unique NamemRNA_Ecto-sp13_S_contig14264.3310.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: A0A6H5K7W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W6_9PHAE)

HSP 1 Score: 688 bits (1775), Expect = 5.420e-248
Identity = 344/367 (93.73%), Postives = 353/367 (96.19%), Query Frame = 2
Query:  209 SSATQKPLSVQQRIDVVVVPEGPSDQTTALVFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHCFAKGSKFIILAPHNLASYFTGDGGLAVFEKQLLPHDAVLYNFEQIPCRWPRESTNLPEPGTRDKSLVSARTLHIYGSYTLWDYSEENARRLLDMGIHADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDAGITVFHPNSEGVDLFDAAFDTVSARSKIVLNLNAFEGATTTSIESRSNGSSPGDLCHNGEWKLPRLARLLANGRFIVSEMSGSDSERAKFSGGVVFTPPERLAETCQFYLQRPGSRMSIAESGRRLFEQHLEADILRRPVGRHLAAHRVLDR 1309
            +++TQK L VQQRIDVVVV EGPSDQTTALVFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHCFAKG KFIILAPHNLASYFTGDGGLAV EK+LLP DAVLYNFEQIPCRWPRESTNL EPGTRD+SLVSARTLHIYGSYTLWDYSEENA RLLDMGIH D+VPLGFSSKLRSSSLLVAGGRVL+EREYEDIDVLFIGMETPTRQRTIRRLRDAGITVFHPNSEGVDLF AAFDTVSARSKIVLNLNAFEGATTT+IESRSNGSSPGDLC NGEWK+PRLARLLANGRFIVSEMSGSDSERAKFSGGVVF PPERLAETCQFYL RPG RMSIAESGRRLFEQHLEADILRRPVGRHLAAHRVLDR
Sbjct:   11 TTSTQKLLWVQQRIDVVVVLEGPSDQTTALVFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHCFAKGGKFIILAPHNLASYFTGDGGLAVLEKKLLPPDAVLYNFEQIPCRWPRESTNLVEPGTRDRSLVSARTLHIYGSYTLWDYSEENAERLLDMGIHTDVVPLGFSSKLRSSSLLVAGGRVLKEREYEDIDVLFIGMETPTRQRTIRRLRDAGITVFHPNSEGVDLFGAAFDTVSARSKIVLNLNAFEGATTTTIESRSNGSSPGDLCDNGEWKMPRLARLLANGRFIVSEMSGSDSERAKFSGGVVFAPPERLAETCQFYLHRPGLRMSIAESGRRLFEQHLEADILRRPVGRHLAAHRVLDR 377          
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: D7FJ49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ49_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 6.230e-131
Identity = 195/211 (92.42%), Postives = 202/211 (95.73%), Query Frame = 2
Query:  677 MGIHADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDAGITVFHPNSEGVDLFDAAFDTVSARSKIVLNLNAFEGATTTSIESRSNGSSPGDLCHNGEWKLPRLARLLANGRFIVSEMSGSDSERAKFSGGVVFTPPERLAETCQFYLQRPGSRMSIAESGRRLFEQHLEADILRRPVGRHLAAHRVLDR 1309
            M IHADLVPLGF+SKLRSSSLLVAGG VLEE+E+EDIDVLFIGMETPTRQRTIRRLRDAGI VFHPNSE VDLF AAFDTVSARSKIVLNLNAFEGATTT+IESRSNGSSPGDLC NGEWK+PRLARLLANGRFIVSEMSGSDSERAKFSGGVVF PPERLAETCQFYLQRP  RMSIA+SGRRLFEQHLEADILRRPVGRHLAAHRVL+R
Sbjct:    1 MSIHADLVPLGFASKLRSSSLLVAGGHVLEEQEHEDIDVLFIGMETPTRQRTIRRLRDAGIMVFHPNSERVDLFGAAFDTVSARSKIVLNLNAFEGATTTAIESRSNGSSPGDLCDNGEWKMPRLARLLANGRFIVSEMSGSDSERAKFSGGVVFAPPERLAETCQFYLQRPELRMSIAQSGRRLFEQHLEADILRRPVGRHLAAHRVLNR 211          
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: A0A8J2S2T6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S2T6_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.530e-34
Identity = 121/384 (31.51%), Postives = 183/384 (47.66%), Query Frame = 2
Query:  197 DLQESSATQKPLSVQQR---IDVVVVPEGPSDQTTALVFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHCFAKGSKFIILAPHNLASYF--TGDGGLAVFEKQLLPHDA--VLYNFEQIPCRWPRESTNLPEPGTRDKSLVSARTLHIYGSYT-------------LWDYSEENARRLLDMGIHADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDAGITVFHPNSEGVDLFDAAFDTVSARSKIVLNLNAFEGATTTSIESRSNGSSPGDLCHNGEWKLPRLARLLANGRFIVSEMS-GSDSERAKFSGGVVFTPPERLAETCQFYLQRPGSRMSIAESGRRLFEQHLEADILRRPVGRHL 1285
            D+QE    + PLS  +    I VVV  +G  D +T   F +I+  V  GL+ LG  +R+ +C +      F    + I LA HNL  +        L +     LP  +  V +NFE +P      +T + E  ++    V     + +GS+              +WDYS  N   L  +    + VPLG+S+  R    L    R+++++   DI +LF G  T  R+RT++ LR   + +FH N++    F  A D +   + IVL+L AF+   T                   EWK+PRLA+LLA G F+VSE + G + + A ++ GVVFT  + L ET Q+Y++RP  R  +A  G+ LFE      +LR PV R L
Sbjct:  228 DVQEEDPPETPLSCAETCPDIAVVVYHQGEDDTSTRGTFFEISRAVVRGLRALGLRARLTHCVDASQGCAFRDHERRIHLATHNLQVFLDLATMAPLMLKRGDFLPRFSMDVAFNFEYVPNVI--NATEVAEASSQKTDHVQ----NAHGSFATAVALATLKKAARVWDYSLANVEPLSTL-TRVEHVPLGWSTAWRPHRDL---SRLIQDK---DIPILFYGTLTSRRKRTLQMLRSNDLPIFHANAQTDGTFAPALDALILSAAIVLDLKAFDSTKTR------------------EWKMPRLAKLLAAGAFVVSEGACGVEHQCAAYAEGVVFT--DDLVETLQYYMERPVERARVAARGKALFEARTFGRVLRGPVERWL 578          
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: F0Y7U6_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7U6_AURAN)

HSP 1 Score: 144 bits (364), Expect = 1.380e-33
Identity = 124/364 (34.07%), Postives = 168/364 (46.15%), Query Frame = 2
Query:  254 VVVVPEGPSDQTTALVFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHC-FA-KGSKFIILAPHNLASYFTGDGGLAVF--EKQLLPHD--AVLYNFEQIPCRWPRESTNLP------EPGTRDK--------SLVSARTLHIYG-SYTLWDYSEENARRLLDMGIHADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDA--GITVFHPNSEGVDLFDAAFDTVSARSKIVLNLNAFEGATTTSIESRSNGSSPGDLCHNGEWKLPRLARLLANGRFIVSEMSGSDSERAK-FSGGVVFTPPERLAETCQFYLQRPGSRMSIAESGRRLFEQHLEADILRRPV 1273
            VVV  +GPSD +T+  F DI+  V  GL+ LG  +R   C  L TD C FA  G + + L  HNL +Y   D    V    ++ L +D  AVLYNFE +P   P +   L       + G R          S  +A TL +   + T+WDYS  N   L  +GI A  VPLG +   R    L A    +       + VLF G  T  R  T+  +R    G  V H N+     F AA D   A + +VLNL AF                 GD   + EWK+PRLA+L AN +F++SE +     + + ++GG+VF     L     +Y  RP  R +IA+ G  LF     A +LR PV
Sbjct:  481 VVVYQQGPSDTSTSGTFADISAAVVAGLRGLGLAARAETCVAL-TDGCRFALDGEQEVALGAHNLQAYVDVDADAPVVLGPRRPLFYDEAAVLYNFEYVP---PDDLETLAAGMAQLQNGARGDGGLTNAAGSFATAATLEVLRRANTVWDYSASNVPSLAALGISATHVPLGDAPPWRIRPALAAA---VSANASSSLPVLFYGTLTRHRAATLAAIRAGPNGQPVVHANAATDGTFGAALDAQIAAADVVLNLRAF-----------------GD--RDDEWKMPRLAKLFANRKFVISEGTCDPGGQCEAYAGGLVFAERRDLKAAVAYYRDRPAERAAIADRGHALFATRSMATVLRGPV 818          
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: A0A8J2X102_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X102_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.950e-21
Identity = 88/285 (30.88%), Postives = 136/285 (47.72%), Query Frame = 2
Query:  398 FAKGSKFIILAPHNLASYF--TGDGGLAVFEKQLLPHDA--VLYNFEQIPCRWPRESTNLPEPGTRDKSLVSARTLHIYGSYT-------------LWDYSEENARRLLDMGIHADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDAGITVFHPNSEGVDLFDAAFDTVSARSKIVLNLNAFEGATTTSIESRSNGSSPGDLCHNGEWKLPRLARLLANGRFIVSEMS-GSDSERAKFSGGVVFTPPERLAETCQFYLQRPGS 1198
            F    + I LA HNL  +        L +     LP  +  V +NFE +P      +T + E  ++    V     + +GS+              +WDYS  N   L  +    + VPLG+S+  R    L    R+++++   DI +LF G  T  R+RT++ LR   + +FH N++    F  A D +   + IVL+L AF+   T                   EWK+PRLA+LLA G F+VSE + G + + A ++ GVVFT  + L ET Q+Y++RPG+
Sbjct:  248 FRDHERRIHLATHNLQVFLDLATMAPLMLKRGDFLPRFSMDVAFNFEYVPNVI--NATEVAEASSQKTDHVQ----NAHGSFATAVALATLKKAARVWDYSLANVEPLSTL-TRVEHVPLGWSTAWRPHRDL---SRLIQDK---DIPILFYGTLTSRRKRTLQMLRSNDLPIFHANAQTDGTFAPALDALILSAAIVLDLKAFDSTKTR------------------EWKMPRLAKLLAAGAFVVSEGACGVEHQCAAYAEGVVFT--DDLVETLQYYMERPGA 499          
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: A0A0S7XIL0_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium DG_8 TaxID=1703397 RepID=A0A0S7XIL0_9DELT)

HSP 1 Score: 94.0 bits (232), Expect = 5.440e-18
Identity = 72/265 (27.17%), Postives = 118/265 (44.53%), Query Frame = 2
Query:  494 LPHDAVLYNFEQIPCRWPRESTNLPEPGTRDKSLVSARTLHIYGSYTLWDYSEENARRLLDMGI-HADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDAGITVFHPNSEGVDLFDA---AFDTVSARSKIVLNLNAFEGATTTSIESRSNGSSPGDLCHNGEWKLPRLARLLANGRFIVSEMSGSDSERAKFSGGVVFTPPERLAETCQFYLQRPGSRMSIAESGRRLFEQHLEADILRRPVG 1276
            +P + +L+N EQI                 D   +S   L+I  SY +WDYS  N ++L ++GI +     +G+  +L               +  EDIDVL  G     R   ++ L++ G+ V       + LF A     D   ARSK++LN++ +E                        +++ R++ LLAN +F++SE+   D     F+ G+VF+  + L E C  YL+   SR  IAE G  L  Q  ++  L++ +G
Sbjct:   66 IPKNLILFNLEQIQL---------------DSPWMSQSYLNILRSYPVWDYSYRNIQKLKNLGISNVTHCGIGYEPELTKIP-----------QSEEDIDVLLYGSLNDRRMEILKELKNNGLKV-------IGLFGAYGGRRDNYIARSKVILNIHYYEARV---------------------FEIVRVSYLLANKKFVISEVGQDDDLEKSFAEGMVFSTYKELVEKCIEYLKEERSRKEIAEKGFNLMRQRPQSVFLKQALG 276          
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: A0A420Z5D4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Woesebacteria bacterium TaxID=2026804 RepID=A0A420Z5D4_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 7.930e-14
Identity = 70/260 (26.92%), Postives = 113/260 (43.46%), Query Frame = 2
Query:  494 LPHDAVLYNFEQIPCRWPRESTNLPEPGTRDKSLVSARTLHIYGSYTLWDYSEENARRLLDMGIH-ADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDAGITVFHPNSEGVDLFDA---AFDTVSARSKIVLNLNAFEGATTTSIESRSNGSSPGDLCHNGEWKLPRLARLLANGRFIVSEMSGSDSERAKFSGGVVFTPPERLAETCQFYLQRPGSRMSIAESGRRLFEQHLEADIL 1261
            +P + +L+N EQI                 D   +S   L++  SY +WDYS  N   L  +GI+      +G+  +L          R+ +  E  DIDVL  G     R + ++ L+++G+ V       V LF       D   ARSKI+LN++ +E                        +++ R++ LLAN +F++SE+   D     +  G+VF+  + L E C  YL+    R  IAE G  L +Q  ++  L
Sbjct:   66 IPKNLILFNLEQIQL---------------DSPWMSQPYLNMLKSYPVWDYSCRNILELKKLGINNVTHCGIGYEPELT---------RIPQVEE--DIDVLLYGSLNERRIKILKELKNSGVKV-------VALFGTYGEERDEYIARSKIILNVHYYEARV---------------------FEIVRVSYLLANKKFVISEIGQDDGLEKPYDEGMVFSTYKELVEKCMEYLKAEAPRKEIAEKGFNLIKQRPQSVFL 271          
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: A0A2A7X5K1_9BACI (DNA-binding protein n=1 Tax=Bacillus wiedmannii TaxID=1890302 RepID=A0A2A7X5K1_9BACI)

HSP 1 Score: 81.3 bits (199), Expect = 3.950e-13
Identity = 74/314 (23.57%), Postives = 136/314 (43.31%), Query Frame = 2
Query:  287 TTALVFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHCFAKGSKFIILAPHNLASYFTGDGGLAVFEKQLLPHDAVLYNFEQI--PCRWPRESTNLPEPGTRDKSLVSARTLHIYGSYTLWDYSEENARRLLDMGIHADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDAG--ITVFHPNSEGVDLFDAAFDTVSARSKIVLNLNAFEGATTTSIESRSNGSSPGDLCHNGEWKLPRLARLLANGRFIVSEMSGSDSERAKFSGGVVFTPPERLAETCQFYLQRPGSRMSIAE 1216
            TT  VF D+   ++  L+     + ++   NL+T+      +K  ++   N + Y T    +        P  A++YNFEQ+   C W                  + + L+I     +WDYS  N   L   G+   +  +    K+  +  L    ++  +  +EDIDVLFIG     RQ  I++L++    + +   N+    ++    + + ARSKI+LN++ +                       G  + PR+++++AN +FI+SE+S  + E      G++F P   +  T   Y Q+P  R+ +A+
Sbjct:  116 TTYKVFIDVVRALKWNLEQ--QDNTVIISENLLTN------AKNTVIFGANNSIYNTSSINI--------PKKAIIYNFEQLYDDCHWD-----------------NPQYLNILKDREIWDYSLHNINWLQKKGLGKSIKHM----KINYAPTLEFKSKIFPD--FEDIDVLFIGSINDRRQLIIKQLKELAPHLNIIFTNN----IWGIPRNELIARSKIILNIHYYL---------------------TGILETPRISQIVANNKFIISELSNPNDELDW--PGIIFVPYNEIVNTVLHYSQKPNERIKLAK 363          
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: J8KAI3_BACCE (Uncharacterized protein n=3 Tax=Bacillus cereus group TaxID=86661 RepID=J8KAI3_BACCE)

HSP 1 Score: 79.7 bits (195), Expect = 4.630e-13
Identity = 81/318 (25.47%), Postives = 143/318 (44.97%), Query Frame = 2
Query:  299 VFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHCFAKGSKFIILAPHNLASYFTGDGGLAVFEKQLLPHDAVLYNFEQI--PCRWPRESTNLPEPGTRDKSLVSARTLHIYGSYTLWDYSEENARRLLDMGIHADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDAGI---TVFHPNSEGVDLFDAAFDTVSARSKIVLNLNAFEGATTTSIESRSNGSSPGDLCHNGEWKLPRLARLLANGRFIVSEMSGSDSERAKFSGGVVFTPPERLAETCQFYLQRPGSRMSIAESGRRLFE 1237
            +F DIA+ ++  L+  G+   +V   +LVT+      +K  ++   N + Y       ++     +P +A++YNFEQ+   CRW                  + R L+I     +WDYS  N   L   G+   +  +    K++ +  L    +     ++EDID+LFIG     RQ    +L+        +F  N  G+D      + + ARSKI+LN++ +                       G  + PR+++++AN +FI+SE+S +D ++A + G +VF P   L  T   Y Q+P   M++A+     F+
Sbjct:   18 IFIDIAKALKWNLEQQGNT--VVISEDLVTN------AKNTVIFGANESIY----NNFSIH----IPKEAIIYNFEQLYNGCRWD-----------------NPRYLNILKDREIWDYSVSNMNWLQKKGLGKLIKHM----KIKYAPTLEF--KFENFPDFEDIDILFIGSMNERRQFIFDQLQKVAPHLNIIFRNNVWGIDK-----NELIARSKIILNIHYYL---------------------TGILETPRISQVVANDKFIISELSNAD-DQADWPG-IVFVPYNELVNTVLHYSQKPIECMNLAKKSYEYFK 268          
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Match: A0A7W8FYF6_9GAMM (Uncharacterized protein n=1 Tax=Chiayiivirga flava TaxID=659595 RepID=A0A7W8FYF6_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 1.600e-9
Identity = 64/230 (27.83%), Postives = 95/230 (41.30%), Query Frame = 2
Query:  275 PSDQTTALVFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHCFAKGSKFIILAPHNLASYFTGDGGLAVFEKQLLPHDAVLYNFEQIPCRWPRESTNLPEPGTRDKSLVSARTLHIYGSYTLWDYSEENARRLLDMGIH-ADLVPLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRDAGITVFHPNSEGVDLFDAAFDTVSARSKIVLNLNAFE 961
            P +   +  F ++A+T+Q GLQ LGH +       +V+     +  + I+L  + L  Y              +P DAV YN EQI               + +     A  L +  +   WDYS  NA  L   G H A ++PLG++  L   +              EDIDVLF G     R   +R L   G+ V H        + A  D   AR++IVLN++ F+
Sbjct:   10 PFNYPHSAAFDEVAQTLQHGLQALGHDA-------VVSSRLDNRRRRHIVLGANLLQKY-----------PAPVPDDAVFYNLEQI---------------SPESVWFRAGLLDVLRTRPCWDYSHGNAAALAAAGAHVAAVLPLGYAPALTRIA-----------PADEDIDVLFYGSLNERRAVVLRELTRRGLRVKHL----FGAYGAERDAWIARARIVLNMHYFD 191          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14264.3310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K7W6_9PHAE5.420e-24893.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ49_ECTSI6.230e-13192.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2S2T6_9STRA1.530e-3431.51Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y7U6_AURAN1.380e-3334.07EF-hand domain-containing protein n=1 Tax=Aureococ... [more]
A0A8J2X102_9STRA6.950e-2130.88Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A0S7XIL0_9DELT5.440e-1827.17Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A420Z5D4_9BACT7.930e-1426.92Uncharacterized protein n=1 Tax=Candidatus Woeseba... [more]
A0A2A7X5K1_9BACI3.950e-1323.57DNA-binding protein n=1 Tax=Bacillus wiedmannii Ta... [more]
J8KAI3_BACCE4.630e-1325.47Uncharacterized protein n=3 Tax=Bacillus cereus gr... [more]
A0A7W8FYF6_9GAMM1.600e-927.83Uncharacterized protein n=1 Tax=Chiayiivirga flava... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14264contigEcto-sp13_S_contig14264:1752..4016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score146.7
Seed ortholog evalue2.3e-32
Seed eggNOG ortholog44056.XP_009036509.1
Model size1312
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG OGs2D16Y@1,2SGY3@2759
Cds size1212
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.7763188-CDS-Ecto-sp13_S_contig14264:1751..19891681462762.7763188-CDS-Ecto-sp13_S_contig14264:1751..1989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14264 1752..1989 -
1681462762.786297-CDS-Ecto-sp13_S_contig14264:2218..27831681462762.786297-CDS-Ecto-sp13_S_contig14264:2218..2783Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14264 2219..2783 -
1681462762.7946136-CDS-Ecto-sp13_S_contig14264:3024..33171681462762.7946136-CDS-Ecto-sp13_S_contig14264:3024..3317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14264 3025..3317 -
1681462762.8028822-CDS-Ecto-sp13_S_contig14264:3800..39161681462762.8028822-CDS-Ecto-sp13_S_contig14264:3800..3916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14264 3801..3916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.812111-UTR-Ecto-sp13_S_contig14264:3916..40161681462762.812111-UTR-Ecto-sp13_S_contig14264:3916..4016Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14264 3917..4016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14264.3310.1prot_Ecto-sp13_S_contig14264.3310.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14264 1752..3916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14264.3310.1

>prot_Ecto-sp13_S_contig14264.3310.1 ID=prot_Ecto-sp13_S_contig14264.3310.1|Name=mRNA_Ecto-sp13_S_contig14264.3310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=404bp
MRYLGRLWMLVALVLLAPTVTGQKRQHRDRRRDLQESSATQKPLSVQQRI
DVVVVPEGPSDQTTALVFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHCF
AKGSKFIILAPHNLASYFTGDGGLAVFEKQLLPHDAVLYNFEQIPCRWPR
ESTNLPEPGTRDKSLVSARTLHIYGSYTLWDYSEENARRLLDMGIHADLV
PLGFSSKLRSSSLLVAGGRVLEEREYEDIDVLFIGMETPTRQRTIRRLRD
AGITVFHPNSEGVDLFDAAFDTVSARSKIVLNLNAFEGATTTSIESRSNG
SSPGDLCHNGEWKLPRLARLLANGRFIVSEMSGSDSERAKFSGGVVFTPP
ERLAETCQFYLQRPGSRMSIAESGRRLFEQHLEADILRRPVGRHLAAHRV
LDR*
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mRNA from alignment at Ecto-sp13_S_contig14264:1752..4016-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14264.3310.1 ID=mRNA_Ecto-sp13_S_contig14264.3310.1|Name=mRNA_Ecto-sp13_S_contig14264.3310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14264:1752..4016- (Ectocarpus species13 EcNAP12_S_4_19m)
ATAGGCTACGGATATAGATACACACCTGGTTGGTGATCAAAATGCACTGT TGTTCCTATCGTGGGGCGCTAGATCTTGGCAACTTCGTCCTAGCTACCCT ATGAGATATCTCGGCAGACTTTGGATGCTCGTTGCATTGGTTCTTCTCGC GCCGACAGTAACTGGACAAAAAAGACAACATCGGGACCGCCGCCGCGATC TCCAAGAATCATCAGCGTGAGCAACAAAGTTCCTGGGTGACCATTGTATG CACACGGAGATTGGAGATAGCCGTTCTGCGGTTGGTTTGGTTAGCCTAGA GACCTCACAAGGTCCTGCTGTGAATTTAAATAATCGGCGCGGTTTATATG TAAGGCGACTAACATGTGTCCGGCCAGTAAAAATCTGACATCCCAATACA GCAGAGTCAGCTGTAAATGTATGTGGAGTAACCTGGTTCCTTCTCCCAGA CTAGTCTACGTGTCGGAACCGACCCCCAGCTGAACTGTTGGGGGATTGCA CGACGGTATTCAGCAATGATACTAGTGTGTGATATGTGTCGAATACTTCT ATGTGCCCCCGTGTTGTCTACTGCTGTGCACGAAGAATTCCCCGCCGCCG TTCAATTGCGCACCAATGACTCTCAAATTGCTCGGCAAGCACGCCCACGA TTTGTCGTCCACATCCCCACCCTATGACCCTATCTCACCTGACGACTAGC ACACAGAAACCGCTGTCGGTACAACAACGGATTGACGTCGTTGTCGTGCC GGAAGGACCTTCGGACCAAACGACAGCCCTGGTGTTTCGTGACATCGCTG AGACTGTGCAAGATGGTCTGCAAAACCTTGGGCACCCATCGAGGATTGTG TATTGCACGAACTTGGTGACTGACCATTGCTTTGCCAAAGGAAGTAAATT CATCATCCTCGCGCCACACAATCTGGCGAGCTACTTCACTGGGGATGGAG GACTAGCAGTATTCGAAAAGCAGTTGCTACCACACGACGCAGGTGATGCC ACTCTTTGTTTCCAGGAACGAAAGAGGAGACACAGAGAGACAGAGAGACA GAGAATTGAACCAAATTTCAGGTATTTAACATGGCGCAGGATTGAACTAA CCACCCGTTTTTCTGGTACAAGTTGTACCGCCCCGCACACACACATCTGC GCCATCCCACCCCTGATCCCTGACTTTTTTCAAACTTTGACCTGGTACCT TATTCGTTTTTTCTCTTACATTTCTACTGCAAGTTTTGTACAACTTCGAA CAAATACCTTGTCGTTGGCCGCGAGAATCGACGAATCTCCCAGAACCTGG GACAAGAGACAAGAGCTTAGTTTCAGCTCGAACGCTTCACATTTACGGAA GCTACACGTTATGGGACTATTCAGAGGAGAACGCGAGGCGTTTGCTGGAC ATGGGCATCCATGCCGACCTAGTTCCACTGGGCTTCTCCTCAAAGCTCCG ATCCAGCAGTCTTCTCGTCGCCGGTGGACGCGTACTTGAAGAGCGGGAGT ACGAAGATATCGACGTGCTGTTCATTGGGATGGAGACTCCTACCCGGCAA CGGACCATTCGCCGACTGCGCGACGCGGGCATCACGGTTTTCCACCCGAA CTCTGAGGGAGTGGACCTGTTCGATGCTGCATTTGATACGGTATCCGCAA GGAGCAAAATCGTGCTCAATTTGAACGCTTTTGAAGGGGCCACAACGACT TCGATCGAGTCCAGGAGCAACGGCAGCAGCCCAGGAGATCTTTGCCACAA CGGGGAATGGAAACTGCCCCGACTTGCCCGTCTTTTGGCCAACGGAAGGT GAGCAGGTGCCACGATCAAGTGAGAGCTCGTTTGCACTACTGTAGTGCGT GTTTGATGCGGGCTTCCAAATTGATAGGTGTTGCTCCTCGCTCGCCCGAT GAGCGATTAATAAGTGGGCGCTGGGCCTTTACGTACATGCGGAGATGTCG CTACTCTGGATTTGTCGACTTCCACTCATTTGTTTCGCGGCTTGTCAAGA AAAGTTCCATTGCGCACTCGCTCGCAGGTTCATCGTCAGCGAGATGAGCG GTAGTGATTCCGAGAGGGCAAAGTTTTCTGGGGGAGTGGTGTTCACACCA CCGGAGCGCCTCGCGGAGACGTGCCAGTTTTATCTTCAAAGGCCAGGGTC GCGGATGAGCATCGCCGAGAGCGGCCGCCGGCTCTTCGAGCAACATCTCG AAGCCGACATATTGAGGAGGCCCGTTGGCAGGCATCTTGCAGCGCATAGA GTGCTAGATAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14264:1752..4016-

>mRNA_Ecto-sp13_S_contig14264.3310.1 ID=mRNA_Ecto-sp13_S_contig14264.3310.1|Name=mRNA_Ecto-sp13_S_contig14264.3310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14264:1752..4016- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGATATCTCGGCAGACTTTGGATGCTCGTTGCATTGGTTCTTCTCGC
GCCGACAGTAACTGGACAAAAAAGACAACATCGGGACCGCCGCCGCGATC
TCCAAGAATCATCAGCCACACAGAAACCGCTGTCGGTACAACAACGGATT
GACGTCGTTGTCGTGCCGGAAGGACCTTCGGACCAAACGACAGCCCTGGT
GTTTCGTGACATCGCTGAGACTGTGCAAGATGGTCTGCAAAACCTTGGGC
ACCCATCGAGGATTGTGTATTGCACGAACTTGGTGACTGACCATTGCTTT
GCCAAAGGAAGTAAATTCATCATCCTCGCGCCACACAATCTGGCGAGCTA
CTTCACTGGGGATGGAGGACTAGCAGTATTCGAAAAGCAGTTGCTACCAC
ACGACGCAGTTTTGTACAACTTCGAACAAATACCTTGTCGTTGGCCGCGA
GAATCGACGAATCTCCCAGAACCTGGGACAAGAGACAAGAGCTTAGTTTC
AGCTCGAACGCTTCACATTTACGGAAGCTACACGTTATGGGACTATTCAG
AGGAGAACGCGAGGCGTTTGCTGGACATGGGCATCCATGCCGACCTAGTT
CCACTGGGCTTCTCCTCAAAGCTCCGATCCAGCAGTCTTCTCGTCGCCGG
TGGACGCGTACTTGAAGAGCGGGAGTACGAAGATATCGACGTGCTGTTCA
TTGGGATGGAGACTCCTACCCGGCAACGGACCATTCGCCGACTGCGCGAC
GCGGGCATCACGGTTTTCCACCCGAACTCTGAGGGAGTGGACCTGTTCGA
TGCTGCATTTGATACGGTATCCGCAAGGAGCAAAATCGTGCTCAATTTGA
ACGCTTTTGAAGGGGCCACAACGACTTCGATCGAGTCCAGGAGCAACGGC
AGCAGCCCAGGAGATCTTTGCCACAACGGGGAATGGAAACTGCCCCGACT
TGCCCGTCTTTTGGCCAACGGAAGGTTCATCGTCAGCGAGATGAGCGGTA
GTGATTCCGAGAGGGCAAAGTTTTCTGGGGGAGTGGTGTTCACACCACCG
GAGCGCCTCGCGGAGACGTGCCAGTTTTATCTTCAAAGGCCAGGGTCGCG
GATGAGCATCGCCGAGAGCGGCCGCCGGCTCTTCGAGCAACATCTCGAAG
CCGACATATTGAGGAGGCCCGTTGGCAGGCATCTTGCAGCGCATAGAGTG
CTAGATAGATGA
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