mRNA_Ecto-sp13_S_contig14262.3307.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14262.3307.1
Unique NamemRNA_Ecto-sp13_S_contig14262.3307.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14262.3307.1 vs. uniprot
Match: A0A6H5K0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H2_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.220e-37
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 3 
Query:    3 LRMLDVQADAMRLNADVQSDFVMFIQTFMDRGAFPVWELESILRINTAVLAVVGVQRALLTLGHAVATVVDYELYGSYYR 242
            LRMLDVQADAMRLNADVQSDFVMFIQ FMDRGAFPVWELESILRINTAVLAV+GVQRALLTLGHAVATVVD+E YGSY R
Sbjct:  477 LRMLDVQADAMRLNADVQSDFVMFIQAFMDRGAFPVWELESILRINTAVLAVMGVQRALLTLGHAVATVVDHEFYGSYSR 556
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BLAST of mRNA_Ecto-sp13_S_contig14262.3307.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.190e-36
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 3 
Query:    3 LRMLDVQADAMRLNADVQSDFVMFIQTFMDRGAFPVWELESILRINTAVLAVVGVQRALLTLGHAVATVVDYELYGSYYR 242
            LRMLDVQADAMRLNADVQSDFVMFIQ FMDRGAFPVWELESILRI+TAVLAV+GVQRALLTLGHAVATVVD E YGSYYR
Sbjct: 1147 LRMLDVQADAMRLNADVQSDFVMFIQAFMDRGAFPVWELESILRISTAVLAVMGVQRALLTLGHAVATVVDRESYGSYYR 1226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14262.3307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0H2_9PHAE2.220e-3793.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD61_ECTSI2.190e-3693.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14262contigEcto-sp13_S_contig14262:2387..3582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size752
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.5139658-UTR-Ecto-sp13_S_contig14262:2386..23941681462762.5139658-UTR-Ecto-sp13_S_contig14262:2386..2394Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14262 2387..2394 +
1681462762.6202312-UTR-Ecto-sp13_S_contig14262:3075..35821681462762.6202312-UTR-Ecto-sp13_S_contig14262:3075..3582Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14262 3076..3582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.5225198-CDS-Ecto-sp13_S_contig14262:2394..24801681462762.5225198-CDS-Ecto-sp13_S_contig14262:2394..2480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14262 2395..2480 +
1681462762.5847995-CDS-Ecto-sp13_S_contig14262:2924..30751681462762.5847995-CDS-Ecto-sp13_S_contig14262:2924..3075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14262 2925..3075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14262.3307.1prot_Ecto-sp13_S_contig14262.3307.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14262 2395..3075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14262.3307.1

>prot_Ecto-sp13_S_contig14262.3307.1 ID=prot_Ecto-sp13_S_contig14262.3307.1|Name=mRNA_Ecto-sp13_S_contig14262.3307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MLDVQADAMRLNADVQSDFVMFIQTFMDRGAFPVWELESILRINTAVLAV
VGVQRALLTLGHAVATVVDYELYGSYYR*
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mRNA from alignment at Ecto-sp13_S_contig14262:2387..3582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14262.3307.1 ID=mRNA_Ecto-sp13_S_contig14262.3307.1|Name=mRNA_Ecto-sp13_S_contig14262.3307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1196bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14262:2387..3582+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTGCGGATGCTGGATGTTCAGGCTGACGCGATGCGGCTCAACGCCGAC
GTGCAGAGCGACTTTGTCATGTTCATTCAGACGTTCATGGACAGGTGAGG
GAGGTAACACCCGATGCTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGC
TCCATTTCGTTCATGTGCAACTCTTGTCCTAGGGAACGACGGGAGGCTCT
TTTGCTCTCCTGGCGTTAATTTCTTTGTTACTTTATTCGAGAGACGAGCT
CCAAACGTCCTGCTTTCAAGTAGCTGGCACGCTGCTCACCGACAAAGCCC
TCGTGTTTTTATCGTCACTAGTGGACAGTGCGCGGAGTGATTGCATCGCC
GCAGATGCATCTAAGCAGGCATCATCCGCTGGGATTCATCAAAGGGCTTG
CTGCGTGGCCAGTGGTTGTCTCATTCTTTGATACCGTGTTGCAAGCGGGT
CATCGCGCACGCCCTTGTACACCGACCTTCAGAGATCGATTGCTCTCGAA
CCAACACTTGGTTTGGTTTCGCCCCCTGATACATGCAGGGGGGCGTTTCC
GGTGTGGGAGCTGGAGTCGATTCTCCGGATTAACACGGCCGTGCTGGCCG
TCGTGGGCGTGCAGAGGGCCCTGCTAACATTGGGGCACGCCGTGGCAACA
GTGGTCGATTACGAGTTGTACGGCTCGTACTACCGATGATGGCGGTTGGT
TTGCGACCATGACATGGCATGGATCGTGTAGACGATATGCACGTCTCGCG
GGCTCAAAGCAACATGCGCGCGTGTTCGAATACCTCGCGATGAACTTTGT
TGGTTCGCATCGGCCCGACTCCTGATTGTCTTCTTCTTCGATTCTGGGCA
TTCGGCGCCATACCGATGAAACGCCTGAGCGTGATGATGTTTCCACCCAT
CACTTGTTTTGGATATAACACAAGACTTAAGGCGGGCACGACCTGGTGCA
TTTTGTTGTGTGTGAGCAAGCGGCTTCTAGGGCGGCAGCGTTTCTCCACA
TGGCGCCAAAGGTCGACCACTTGCAGTTAGGAAGAACAAAAATATCACAA
CATCCCTTGGCGGAGGTCAAGTCCACAGCCATCGGTTGGTTGCACACGCA
CACACATGGCTAGTTGAAGAATGTGCGTTTTTCGTTCCAAGTGACCGTAT
TGCATCACATCCAGCGTGAACGTGTACATTTGGCGAGGATTGCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14262:2387..3582+

>mRNA_Ecto-sp13_S_contig14262.3307.1 ID=mRNA_Ecto-sp13_S_contig14262.3307.1|Name=mRNA_Ecto-sp13_S_contig14262.3307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14262:2387..3582+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGATGTTCAGGCTGACGCGATGCGGCTCAACGCCGACGTGCAGAG
CGACTTTGTCATGTTCATTCAGACGTTCATGGACAGGGGGGCGTTTCCGG
TGTGGGAGCTGGAGTCGATTCTCCGGATTAACACGGCCGTGCTGGCCGTC
GTGGGCGTGCAGAGGGCCCTGCTAACATTGGGGCACGCCGTGGCAACAGT
GGTCGATTACGAGTTGTACGGCTCGTACTACCGATGA
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