mRNA_Ecto-sp13_S_contig14259.3302.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14259.3302.1
Unique NamemRNA_Ecto-sp13_S_contig14259.3302.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: D7FPI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI4_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.520e-45
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDKKRTEIMRSSGLRVEQLKAELDQLLISDDH 252
            MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVL SVD+KKRTEIMRSSGLRVEQLKAELDQLLISDDH
Sbjct:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLRSVDEKKRTEIMRSSGLRVEQLKAELDQLLISDDH 84
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: A0A7S2CH79_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CH79_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.950e-23
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDKKRTEIMRSSGLRVEQLKAELDQLLISDDH 252
            +D  NDLFV AREE+E AEESKETTY+DEEA  A+EAVE A+A + ++L S+++  R E  R +GL++EQLKAEL+ LL SDDH
Sbjct:   16 VDSLNDLFVEAREEIEMAEESKETTYYDEEAEIAQEAVEAALAEYGDILNSLEEPARGEFQRGNGLKMEQLKAELEILLHSDDH 99
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: A0A836C9H1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9H1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.710e-23
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDKKRTEIMRSSGLRVEQLKAELDQLLISDDH 252
            MDEFNDLFV AREE++YA ESKETTYF++E  AA+ AVE A+  F E+L  V+++++  IMRS+GL+VEQLK EL  L+I  +H
Sbjct:   72 MDEFNDLFVEAREEIQYAGESKETTYFNDEVKAAQAAVESALECFSELLNGVEEEQKQAIMRSNGLKVEQLKQELQLLMIEHEH 155
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: A0A7S4JN07_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JN07_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.280e-17
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDKKRTEIMRSSGLRVEQLKAELDQLL 237
            +DEF DLFV AR  +E   +S +TTYFDEEA AAKEAV+EAV+ F+ ++G +D++ +  +MR +GL+V QLK ELD +L
Sbjct:   86 LDEFQDLFVEARLSIEDCADSADTTYFDEEAEAAKEAVDEAVSAFDTLIGELDEETKGRVMRQNGLKVAQLKGELDLVL 164
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: A0A484LV25_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LV25_9ASTE)

HSP 1 Score: 77.4 bits (189), Expect = 7.730e-17
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDKKRTEIMRSSGLRVEQLKAELDQL 234
            +DE N  F  AREE+E A ESKET YFDEEA  A++AV E + L+E +L  + +K+R  I RS GL++EQLKAEL+QL
Sbjct:   10 VDEINLKFAEAREEIESAMESKETLYFDEEAECARKAVNEVLELYEGLLEKLPEKEREAIQRSMGLKIEQLKAELEQL 87
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: A0A2G2ZQ26_CAPAN (Uncharacterized protein n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2ZQ26_CAPAN)

HSP 1 Score: 78.2 bits (191), Expect = 2.180e-16
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDKKRTEIMRSSGLRVEQLKAELDQL 234
            +D+ N  F  AREE+E A ESKET YF+EEA  A++AV+E + L++E+LG V + ++  I RS GL++EQLKAELDQL
Sbjct:   79 VDKINLKFAEAREEIESAMESKETVYFNEEADCARDAVKEVLDLYQELLGKVSESEKGVIQRSMGLKIEQLKAELDQL 156
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: A0A7S0FJV1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJV1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.400e-16
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDK-KRTEIMRSSGLRVEQLKAELDQLLISDDH 252
            MDEF DLFV AR  +E A+ES+ETTYF E+  AA+EAV+EAVA F+ ++  ++DK ++  ++RS+GL+VEQLK EL  ++    H
Sbjct:   92 MDEFQDLFVEARLCIEDAQESQETTYFAEDLDAAQEAVDEAVAAFKGIVNDIEDKDQKNSVLRSNGLKVEQLKGELQMIIDGHGH 176
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: UPI000B8CE0DF (uncharacterized protein LOC110818135 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CE0DF)

HSP 1 Score: 78.6 bits (192), Expect = 2.620e-16
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDKKRTEIMRSSGLRVEQLKAELDQL 234
            +D  N  FV AREE+E A ESKET YF+EEA  A+ AV+E V LFE +LG + + ++T I RS GL++EQLKAEL QL
Sbjct:  103 VDMINLKFVEAREEIEMAMESKETVYFNEEAECARAAVKEVVELFEGLLGKLPESEKTAIQRSMGLKIEQLKAELQQL 180
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: A0A328DSJ9_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DSJ9_9ASTE)

HSP 1 Score: 77.4 bits (189), Expect = 3.970e-16
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDKKRTEIMRSSGLRVEQLKAELDQL 234
            +DE N  F  AREE+E A ESKET YFDEEA  A++AV E + L+E +L  + +K+R  I RS GL++EQLKAEL+QL
Sbjct:   75 VDEINLKFAEAREEIESAMESKETLYFDEEAECARKAVNEVLELYEGLLQKLPEKEREAIQRSMGLKIEQLKAELEQL 152
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BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Match: A0A7S2SM76_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM76_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.410e-16
Identity = 40/79 (50.63%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLGSVDDKKRTEIMRSSGLRVEQLKAELDQLL 237
            ++E +DLFV AREE++ A ES  TTY++EEA AAKEAVE A++ ++ +LG+++D    E  R +GL++EQL+AEL+ L+
Sbjct:   20 LNELSDLFVEAREEIDLAMESIGTTYYNEEAEAAKEAVEAAISKYQAILGNLEDPHSGEFQRGNGLKMEQLRAELEGLI 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14259.3302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPI4_ECTSI1.520e-4597.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CH79_9STRA2.950e-2360.71Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836C9H1_9STRA6.710e-2359.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4JN07_9STRA1.280e-1754.43Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A484LV25_9ASTE7.730e-1756.41Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A2G2ZQ26_CAPAN2.180e-1655.13Uncharacterized protein n=1 Tax=Capsicum annuum Ta... [more]
A0A7S0FJV1_9STRA2.400e-1651.76Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
UPI000B8CE0DF2.620e-1657.69uncharacterized protein LOC110818135 n=1 Tax=Caric... [more]
A0A328DSJ9_9ASTE3.970e-1656.41Uncharacterized protein n=2 Tax=Cuscuta sect. Clei... [more]
A0A7S2SM76_9STRA6.410e-1650.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14259contigEcto-sp13_S_contig14259:616..2559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score80.9
Seed ortholog evalue3.2e-13
Seed eggNOG ortholog3649.evm.model.supercontig_26.114
Model size255
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2CMFC@1,2S3XZ@2759,37W2K@33090,3GKBR@35493,3I1PU@3699
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_000670.1
Cds size255
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462762.0457077-CDS-Ecto-sp13_S_contig14259:615..6791681462762.0457077-CDS-Ecto-sp13_S_contig14259:615..679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14259 616..679 -
1681462762.063768-CDS-Ecto-sp13_S_contig14259:1082..11551681462762.063768-CDS-Ecto-sp13_S_contig14259:1082..1155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14259 1083..1155 -
1681462762.0807867-CDS-Ecto-sp13_S_contig14259:1782..18701681462762.0807867-CDS-Ecto-sp13_S_contig14259:1782..1870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14259 1783..1870 -
1681462762.0929043-CDS-Ecto-sp13_S_contig14259:2529..25591681462762.0929043-CDS-Ecto-sp13_S_contig14259:2529..2559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14259 2530..2559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14259.3302.1prot_Ecto-sp13_S_contig14259.3302.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14259 616..2559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14259.3302.1

>prot_Ecto-sp13_S_contig14259.3302.1 ID=prot_Ecto-sp13_S_contig14259.3302.1|Name=mRNA_Ecto-sp13_S_contig14259.3302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MDEFNDLFVTAREEMEYAEESKETTYFDEEAAAAKEAVEEAVALFEEVLG
SVDDKKRTEIMRSSGLRVEQLKAELDQLLISDDH*
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mRNA from alignment at Ecto-sp13_S_contig14259:616..2559-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14259.3302.1 ID=mRNA_Ecto-sp13_S_contig14259.3302.1|Name=mRNA_Ecto-sp13_S_contig14259.3302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1944bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14259:616..2559- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAATTCAACGACCTGTTTGTCACCGTGAGTACGTGTCGTGAGGC
ATTGCAGCAAATCGTCAGCTTTCGGCAGCGAGGTTTGAAACATACCGCAG
TCACGTACGTAAGATACCACCCCCCCTGGCCAATGTGTAAGCACGTTGCT
CCATGGTGAAGAGTGAACTAAGTGTACATCGTGCGGTAACATCTTGACAT
GACCGTTCGAACGCTTCCATTTTCGGTGCCGCCACTCTCTCTCTCTCTCT
CTGCTGCTGTGTGGAACAATCGTGCTTTGAGTTATGGTCAGGGGGTGTGG
TTTATTATGTCACATGCGGTAGATCGGAAGTGTGGTGCATCGGGGAACAC
CCAGCTCCCATGCTCCTGGCGTCGTGTGCATGTACTTCATACTCGAGTGC
CCGTGTCGGATGGTCGCGCGTGTTGACTCTCGCACACGGCCTTTGCGCTT
GCGGATGGAAGCGCTGTCACAAACGCAATTGACAGAAACGGAACGAGACA
TTTTGGCCAAAACACGAGCGGTTTCCTCCCCCTTGACTCCAAGCCCTTCC
GGGGCAGGTTCCATAGCATTTGTGTGCAACCGCTTGGTCGACACATGCAT
AACGCGACACACTGCATGATCTCTGTTGTTTCTCTCGTCCCTCGTGCGAT
CCATGCCACGCTGCGCGTGTCTCGTTCACGTTGGGTCAGGCAAGGGAAGA
AATGGAATACGCCGAGGAGAGCAAGGAAACAACCTACTTCGACGAAGAAG
CGGCGGCGGCTAAAGAGGCTGTTGAAGGTAGAGAACACCGAATTTATGAT
AATAGCTCTCCGGTCTTTGATAGAGGAGAGATCAGAAACGCACGTCGACT
CCCGCTCGGATCCGGCCATGTAGGGGGCGATAAGAGGAGTCTCTTGCAAT
CCCCACTGAGACTTCAGTCGTTGACGGCCGACAACAAAGAGAACCTGCAA
GAGGTTGAGGTTCAGGCGAAGTGCAGAATCTTCACGACTCCCCCCGGGTC
AATGTCTAGTGTTTCTTTCGAGCAGAGGCATCCTCTGGGCCCTTGCTGAG
GGCGCAGCGTTGATTGGTTCTAGTACAGGCAACTCCTCGACGTAGCATGG
ATATTGTACGCCAGCGAGAGGCTGCACGTTAGTCTATGGGTGGAGACTAA
ACTGGAGTTCTTTGGTAGAGGAGCTAGCGTATGTTGTGGCCCCGCTGTGC
GGTGGACGTGAGGTATTACCGACGCATCAGTAGACACTACCTTCCTGCTA
AGAGTAGAGACCATGGCGAAGTAGGCGCCCCCACTGCATTTCGCGGGGCC
CGGCCTCGTTTGGTCGCTCCGATGTCCCTCCCGTCCCCCGTATTTCAAAT
CCGGGATATTTCTCCTTTCCTCTGCGCGTGGGAAACTCGTCCGCCGTTTA
TCAGAGGCAGTGGCGCTATTTGAGGAGGTGCTGGGATCCGTGGACGACAA
GAAGCGAACAGAAATCATGAGATCAAGGTGTGGGGCCGGGAATAGTTTTT
GGACCGTTTGGTGGGCAAATGCGTATCTCGGGCTCGCGGTTGGTCGCGCA
CTAGAAGTATGCTTAGAGACTGCAGTGTTGATTGGAAAAAGCAAGGCCTC
ACTTGGAGCGATATTGATTCCGGGGGGCAGTACAATGACCATTTCCACGC
CGTATTTGTTGCAGCTTGTATGTCGGACGCATCGCACGAACTGGTCTTAA
CGCTCGTGCAGCCTTGTACGTGCTGGCAGCACGAGACTGTATACGAGCAA
CACCCCTCTCACTTTCCGTCTGCAGAGAACGTCGCAGCCAGTCGCCTTTC
TGCGGCCCGCTTGTATTGTCGTAACGAACGCACCGTGACGTGCTGCCACT
CCTTGCCTCCCCGCACGTCGTGCCGCACAGTGGCCTGCGAGTCGAGCAGC
TGAAGGCGGAGCTCGACCAATTGTTGATATCTGATGACCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14259:616..2559-

>mRNA_Ecto-sp13_S_contig14259.3302.1 ID=mRNA_Ecto-sp13_S_contig14259.3302.1|Name=mRNA_Ecto-sp13_S_contig14259.3302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14259:616..2559- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAATTCAACGACCTGTTTGTCACCGCAAGGGAAGAAATGGAATA
CGCCGAGGAGAGCAAGGAAACAACCTACTTCGACGAAGAAGCGGCGGCGG
CTAAAGAGGCTGTTGAAGAGGCAGTGGCGCTATTTGAGGAGGTGCTGGGA
TCCGTGGACGACAAGAAGCGAACAGAAATCATGAGATCAAGTGGCCTGCG
AGTCGAGCAGCTGAAGGCGGAGCTCGACCAATTGTTGATATCTGATGACC
ACTGA
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