mRNA_Ecto-sp13_S_contig14258.3301.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14258.3301.1
Unique NamemRNA_Ecto-sp13_S_contig14258.3301.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14258.3301.1 vs. uniprot
Match: D7G757_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G757_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 8.460e-62
Identity = 114/137 (83.21%), Postives = 119/137 (86.86%), Query Frame = 1 
Query:    1 MTGFTTPQWITFTFLAVVIGCLFCFARSVSTHIGRSEAQRGGTNQEQDHHATRARSETNVPRAYHEAAVQNGGQVPRGSSATVVARNAATPAVRKAYQRHXXXXXXXXPAARMQSEEAVRMRPRPASNTSFTFGSGF 411
            M+GFTTPQWI FTFL VVIGCLFCFARS S HIG SEAQRGGT+QEQDHHAT ARSETNV  AYHEAAVQNGGQVPRGSSA+VVARNAATPAVR+     XXXXXXXX    MQSEEAVRMRPRPASN+SFTFGS F
Sbjct:    1 MSGFTTPQWIAFTFLGVVIGCLFCFARSDSKHIGTSEAQRGGTDQEQDHHATGARSETNVRLAYHEAAVQNGGQVPRGSSASVVARNAATPAVREXXXXXXXXXXXXXXXXXMQSEEAVRMRPRPASNSSFTFGSDF 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14258.3301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G757_ECTSI8.460e-6283.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14258contigEcto-sp13_S_contig14258:2857..4236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size411
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_010960.1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462761.9978604-CDS-Ecto-sp13_S_contig14258:2856..29631681462761.9978604-CDS-Ecto-sp13_S_contig14258:2856..2963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14258 2857..2963 +
1681462762.016341-CDS-Ecto-sp13_S_contig14258:3932..42361681462762.016341-CDS-Ecto-sp13_S_contig14258:3932..4236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14258 3933..4236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14258.3301.1prot_Ecto-sp13_S_contig14258.3301.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14258 2857..4236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14258.3301.1

>prot_Ecto-sp13_S_contig14258.3301.1 ID=prot_Ecto-sp13_S_contig14258.3301.1|Name=mRNA_Ecto-sp13_S_contig14258.3301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MTGFTTPQWITFTFLAVVIGCLFCFARSVSTHIGRSEAQRGGTNQEQDHH
ATRARSETNVPRAYHEAAVQNGGQVPRGSSATVVARNAATPAVRKAYQRH
GGYVPKGSPAARMQSEEAVRMRPRPASNTSFTFGSGF
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mRNA from alignment at Ecto-sp13_S_contig14258:2857..4236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14258.3301.1 ID=mRNA_Ecto-sp13_S_contig14258.3301.1|Name=mRNA_Ecto-sp13_S_contig14258.3301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14258:2857..4236+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGGATTCACTACACCCCAATGGATTACATTTACCTTCCTCGCAGT
GGTAATAGGTTGTCTCTTTTGCTTCGCCCGCTCGGTTTCAACGCACATCG
GAAGAAGGTGAGACAAAACCATCCGATCACCTTTTTTGACAACTTGCCCA
AAGTGCATTCTGCATTTCTGAATCATAAGGATACAAGTGCGCCGGGCGAC
TTGATATTGTGGAGAGCATCATCACACCACACACATGGCCCGATCTGCCA
TCGACAAAGCCAATTGAGGAACGAATTGCACACCACATCGTAAACCCCCG
GAGTCGGGGGGAGGGGGGCTCCTACGTCCCTACCACCGGTCAATCTTGTT
GCTGTGTGCTACTGGTAAAGAGCCAGCGAGTTGTGCCTCACCTACTGTGC
TTGATCCAACAAGCAATTACACGAACTCGAAAGGTGAAGGCATTTAGCAT
ACCAAATCAAATGCCTACCTGGAGGAAAGCGACGAGGGAGTGTGGCAAAA
GTTTGCGGGAGGAGGTGCGAATAAGCTACTGTACCATCCTGTAGATTCGA
AAGAGAAACAAACGTCAACATATAGTCTAACTGCTGCGGCAACTTCATAC
CGTCTCGTACCAGGTTTTGTAGACTACAAGCAGACCCGTAGGTCGCAGAG
GTGAAAACACGAACCACAGGTATGTGTCTAATTAAGAGAAACAATTCCCG
CGATGGTGCTATGATAGCTGCCGATGTGTGCAAAATGACCCGCAACAACG
TTTGCGCATGATGAATAAAAATGCACATTTTGGCAAAGGCTGTCCGATAT
CCGATGCGGGGTCCCTCTTCCCCGTAGGCCCGTAGGTAACGCACCCTTGT
GTTACCTCTCCTTAACCTTAAGGCCGGTGGTGAAATGTACGCGAGAATAA
CCAACAATTTTTGGAGCTATCCCACAACAAAGACTCCAAAAACAAACGCA
AAGCAGACGAACCACCACCCTTACCACATGAATCTTGGCTGCGGGAAACA
AAGCGACTTATGTGATAAAGCCCGGCGAGCTCATCGCGTACACGGCACCC
CTACCTACACTAATATATCTATGCAGCGAAGCGCAACGCGGCGGCACGAA
CCAGGAACAAGACCATCATGCCACCAGGGCGAGGTCGGAGACCAATGTCC
CCCGCGCGTACCACGAGGCCGCCGTGCAGAACGGAGGGCAGGTGCCTAGG
GGATCTTCCGCCACCGTTGTGGCGAGAAACGCTGCAACGCCGGCAGTCCG
AAAGGCATACCAACGGCACGGCGGGTACGTGCCCAAGGGAAGTCCTGCTG
CCCGCATGCAGTCCGAGGAGGCGGTGCGGATGCGGCCCCGGCCGGCATCG
AACACCTCCTTCACGTTCGGTAGTGGCTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14258:2857..4236+

>mRNA_Ecto-sp13_S_contig14258.3301.1 ID=mRNA_Ecto-sp13_S_contig14258.3301.1|Name=mRNA_Ecto-sp13_S_contig14258.3301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14258:2857..4236+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGGATTCACTACACCCCAATGGATTACATTTACCTTCCTCGCAGT
GGTAATAGGTTGTCTCTTTTGCTTCGCCCGCTCGGTTTCAACGCACATCG
GAAGAAGCGAAGCGCAACGCGGCGGCACGAACCAGGAACAAGACCATCAT
GCCACCAGGGCGAGGTCGGAGACCAATGTCCCCCGCGCGTACCACGAGGC
CGCCGTGCAGAACGGAGGGCAGGTGCCTAGGGGATCTTCCGCCACCGTTG
TGGCGAGAAACGCTGCAACGCCGGCAGTCCGAAAGGCATACCAACGGCAC
GGCGGGTACGTGCCCAAGGGAAGTCCTGCTGCCCGCATGCAGTCCGAGGA
GGCGGTGCGGATGCGGCCCCGGCCGGCATCGAACACCTCCTTCACGTTCG
GTAGTGGCTTT
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