prot_Ecto-sp13_S_contig14258.3301.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14258.3301.1
Unique Nameprot_Ecto-sp13_S_contig14258.3301.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length137
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14258.3301.1 vs. uniprot
Match: D7G757_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G757_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 8.460e-62
Identity = 114/137 (83.21%), Postives = 119/137 (86.86%), Query Frame = 0 
Query:    1 MTGFTTPQWITFTFLAVVIGCLFCFARSVSTHIGRSEAQRGGTNQEQDHHATRARSETNVPRAYHEAAVQNGGQVPRGSSATVVARNAATPAVRKAYQRHXXXXXXXXPAARMQSEEAVRMRPRPASNTSFTFGSGF 137
            M+GFTTPQWI FTFL VVIGCLFCFARS S HIG SEAQRGGT+QEQDHHAT ARSETNV  AYHEAAVQNGGQVPRGSSA+VVARNAATPAVR+     XXXXXXXX    MQSEEAVRMRPRPASN+SFTFGS F
Sbjct:    1 MSGFTTPQWIAFTFLGVVIGCLFCFARSDSKHIGTSEAQRGGTDQEQDHHATGARSETNVRLAYHEAAVQNGGQVPRGSSASVVARNAATPAVREXXXXXXXXXXXXXXXXXMQSEEAVRMRPRPASNSSFTFGSDF 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14258.3301.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G757_ECTSI8.460e-6283.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..137
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14258contigEcto-sp13_S_contig14258:2857..4236 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14258.3301.1mRNA_Ecto-sp13_S_contig14258.3301.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14258 2857..4236 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14258.3301.1 ID=prot_Ecto-sp13_S_contig14258.3301.1|Name=mRNA_Ecto-sp13_S_contig14258.3301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MTGFTTPQWITFTFLAVVIGCLFCFARSVSTHIGRSEAQRGGTNQEQDHH
ATRARSETNVPRAYHEAAVQNGGQVPRGSSATVVARNAATPAVRKAYQRH
GGYVPKGSPAARMQSEEAVRMRPRPASNTSFTFGSGF
back to top