mRNA_Ecto-sp13_S_contig1425.3299.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1425.3299.1
Unique NamemRNA_Ecto-sp13_S_contig1425.3299.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1425.3299.1 vs. uniprot
Match: A0A6H5JND6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND6_9PHAE)

HSP 1 Score: 388 bits (997), Expect = 1.320e-131
Identity = 230/250 (92.00%), Postives = 234/250 (93.60%), Query Frame = 1 
Query:  136 MPPRRSIKKKGRLQEAEAASKSIKTIYDNGHAADHLDEEEDVGSGCPIVEEPSTREAQTEYVERIIEEVEAKAREWCDAIMDENASNIRMQKRTRDRVKNKINRKFRHMKLSDLCHMSGNDFNAALLMAVPPEERAVLLAEAGEDADEXXXXEENMPTAVKGRNPPRMVPATPRGGGRPAGSRVTRSAVKGARTSSRMSVAAEPLPVEAGAVAQXXXXXXXXXXXXXXXXXXXXGGGPGRDVYPLSTSIE 885
            MPPRR I KKGRLQEAEAASKSIKTIYD+GHAADHLDEEED GS CPIVEEPSTREAQTEYVERIIEEVEAKAREWCDAIMDENASNIRMQKRTRDRVKNKINRKFRHMKLSDLCHMSGND+NAALLMAVPPEERAVLLAE GED DE    EENMPTAVKGRNPPRMVPATP+GGGRPAGSRVTRSAVKGARTSSR+SV AEPLPVE GAVAQXXXXXXXXXXXXXXXXXXXX   PGRDV PLSTSIE
Sbjct:    1 MPPRRCINKKGRLQEAEAASKSIKTIYDDGHAADHLDEEEDFGSTCPIVEEPSTREAQTEYVERIIEEVEAKAREWCDAIMDENASNIRMQKRTRDRVKNKINRKFRHMKLSDLCHMSGNDYNAALLMAVPPEERAVLLAEVGEDTDEEENDEENMPTAVKGRNPPRMVPATPKGGGRPAGSRVTRSAVKGARTSSRLSVPAEPLPVEVGAVAQXXXXXXXXXXXXXXXXXXXXXEAPGRDVCPLSTSIE 250
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BLAST of mRNA_Ecto-sp13_S_contig1425.3299.1 vs. uniprot
Match: D8LJB0_ECTSI (FHA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB0_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 5.790e-119
Identity = 223/250 (89.20%), Postives = 227/250 (90.80%), Query Frame = 1 
Query:  136 MPPRRSIKKKGRLQEAEAASKSIKTIYDNGHAADHLDEEEDVGSGCPIVEEPSTREAQTEYVERIIEEVEAKAREWCDAIMDENASNIRMQKRTRDRVKNKINRKFRHMKLSDLCHMSGNDFNAALLMAVPPEERAVLLAEAGEDADEXXXXEENMPTAVKGRNPPRMVPATPRGGGRPAGSRVTRSAVKGARTSSRMSVAAEPLPVEAGAVAQXXXXXXXXXXXXXXXXXXXXGGGPGRDVYPLSTSIE 885
            MP RRSIKKKGRLQEAEAASKSIKTIYD+GHAADHLDEEEDVGS CPIVEEPSTREAQTEYVERIIEEVEAKAREWCDAIMDENASNIRMQKRTRDRVKNKINRKFRHMKLSDLCHMSGND+NAALLMAVP                 XXXX  NMPTAVKGRNPPRMVPATP+GGGRPAGSRVTRSAVKGAR SSR+SVAAEPLPVEAGAVAQXXXXXXXXXXXXXXXXXXXXGG PGRDVYPLSTSIE
Sbjct:    1 MPARRSIKKKGRLQEAEAASKSIKTIYDDGHAADHLDEEEDVGSTCPIVEEPSTREAQTEYVERIIEEVEAKAREWCDAIMDENASNIRMQKRTRDRVKNKINRKFRHMKLSDLCHMSGNDYNAALLMAVPXXXXXXXXXXXXXXXXXXXXXXXNMPTAVKGRNPPRMVPATPKGGGRPAGSRVTRSAVKGARISSRLSVAAEPLPVEAGAVAQXXXXXXXXXXXXXXXXXXXXGGAPGRDVYPLSTSIE 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1425.3299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JND6_9PHAE1.320e-13192.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJB0_ECTSI5.790e-11989.20FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1425contigEcto-sp13_S_contig1425:13972..16964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score365.2
Seed ortholog evalue3e-98
Seed eggNOG ortholog2880.D8LJB0
Model size886
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.FHA domain
EggNOG OGs2E05Y@1,2S7MG@2759
Ec32 ortholog descriptionForkhead-associated (FHA) domain
Ec32 orthologEc-02_005410.1
Cds size885
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462761.8349602-CDS-Ecto-sp13_S_contig1425:13971..143231681462761.8349602-CDS-Ecto-sp13_S_contig1425:13971..14323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1425 13972..14323 +
1681462761.8468115-CDS-Ecto-sp13_S_contig1425:15418..156711681462761.8468115-CDS-Ecto-sp13_S_contig1425:15418..15671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1425 15419..15671 +
1681462761.8556833-CDS-Ecto-sp13_S_contig1425:16684..169641681462761.8556833-CDS-Ecto-sp13_S_contig1425:16684..16964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1425 16685..16964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1425.3299.1prot_Ecto-sp13_S_contig1425.3299.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1425 13972..16964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1425.3299.1

>prot_Ecto-sp13_S_contig1425.3299.1 ID=prot_Ecto-sp13_S_contig1425.3299.1|Name=mRNA_Ecto-sp13_S_contig1425.3299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
VLESLVPPAGTLPFLLARHPCHVRFARSLSGLSRESWHPPRKRIIMPPRR
SIKKKGRLQEAEAASKSIKTIYDNGHAADHLDEEEDVGSGCPIVEEPSTR
EAQTEYVERIIEEVEAKAREWCDAIMDENASNIRMQKRTRDRVKNKINRK
FRHMKLSDLCHMSGNDFNAALLMAVPPEERAVLLAEAGEDADEDEDDEEN
MPTAVKGRNPPRMVPATPRGGGRPAGSRVTRSAVKGARTSSRMSVAAEPL
PVEAGAVAQTPTGRARAVGGRAMRSAVKGGGGPGRDVYPLSTSIE
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mRNA from alignment at Ecto-sp13_S_contig1425:13972..16964+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1425.3299.1 ID=mRNA_Ecto-sp13_S_contig1425.3299.1|Name=mRNA_Ecto-sp13_S_contig1425.3299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1425:13972..16964+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACTCGAGAGTCTTGTCCCTCCCGCTGGTACCCTTCCGTTCCTGCTGGC
CAGGCACCCTTGCCACGTACGCTTCGCTCGTTCTCTCTCTGGGCTGTCGC
GGGAGTCTTGGCATCCTCCTCGGAAGCGCATCATTATGCCTCCTCGACGG
AGTATCAAGAAGAAGGGGCGACTGCAGGAGGCAGAGGCGGCCTCTAAAAG
CATCAAGACCATCTACGACAACGGCCACGCGGCAGATCACCTTGACGAAG
AGGAGGACGTTGGCAGCGGCTGCCCGATTGTGGAGGAGCCATCGACGCGT
GAGGCGCAGACGGAGTATGTTGAACGAATTATCGAAGAGGTCGAAGCGAA
AGGTGCGAGCAAGTTCTCCCACAGGTTAGCATGTCAACCAGAGCCGCGCA
AGAGATGGGAGGGATCAACTGGCATACAGCACCTCACTACTGCTCTACCG
TAGCCGTAGGTAAAATAAGATATTACACACCCTGGACCGATATTCAAAGC
TCGATTACTCCACGACGAAGATTATTCCACAGTCAAAGAGTGTGTTTTCG
GAAAACTCTTGACGGGCACGGTTCAAATGTCGCCATTTTTCGACACATCG
AGCTTTCAAAATCAGCAGGGAGTGTGAGATTCATCTTCGTGTTTCGGTAT
TCATATGTTGCACTTTACAGCACCTGGTGCAGTTATACTTGCACGGGATC
ATTGCCTATCGATAACGCTGCATGTCTTTCATTCCTTTTCCCTGTAGACG
CATTACGGAGTCTTTGGCACAGAGCATCTTTCACTCTCTCTCTGTTCAAA
AGTACCGTGTTGTGCGGCATGTGATCCTTGACAAGGGTCAATTCTCCATG
CCGCTGCTGCTGTCGTAGCTCGTCAGCTACAACAGCAGCATCAGCTATAA
CAGCAGCATGGAGAATTGACTTTTTCGAGCTTCGTATTATAGTTGCAAAT
AGACTGGTTTTCCCCTGCAAGGGGCGGCCAGAGGAAGGAAGTAACCCGTT
GTTCTCATGTCATGGTGACAACAGAGTCCGCAACCGCAGTCAACGTTATC
TTTGGACTAGCAGACTAATCTGTTTGCTGCTGTTTGTTCCGGCGGAGGCG
TTCGAAGCGCTGTAGATCGGGGAAATACTTGCAGCAGTTGTCAAGGTCAA
GGTCGACCACGCATCCGGCATAAAACACCAATACAATAGCAGAGACGGAA
ACCCTCTCTGCGTATGCATGTATCAACTCCCTGCCGCAAGCACACCCACA
TCCCATATTCTCAACCTCTGTTTCGGACAATGTGGCATGCAAGTCCCTGT
CGCATGCACACATAAACCCGTTACTTGTTCTCATCCTCTGCTTCGGACAA
CGTGGCATGTCAACTCCCTGCCGCATGCACACACTCTACCGCCTCATTCC
CATACCTCCGACAACTGTTTCGGACAACAATGTCACATGTTTATCAGCCC
GGGAGTGGTGCGATGCAATCATGGACGAGAACGCGTCCAACATCCGGATG
CAGAAGCGAACGCGCGACCGAGTGAAGAACAAGATCAACCGCAAGTTCCG
ACATATGAAGCTGTCGGATCTGTGCCACATGTCCGGGAACGACTTCAACG
CGGCGCTGCTGATGGCGGTGCCCCCGGAGGAGCGCGCGGTCTTGCTGGCG
GAGGCCGGGGAGGACGCGGATGAGGACGAGGACGACGAGGAGAACATGCC
GTGAGTGGTCGGGCTGTGGTGTGCAGCATGTCACGGTCAGTGCTAACTTT
TGCGGGCAGCAGTTCAGGTGTCAGGGTCGATGCCAAGTGCAGTGAGGGTC
CCCGAATATGGCGGTTTGAGTATTGCGGTCGACCTATATGCGGCGGGTGA
AATTGGCTGACGTAGATCAAGTTGTTCTGCACATTGAATACGGCCTCTGC
CCCGTATAAGGCAGTCAATCTCAGCTGCCCCACCACTGCCATATTCGGGC
ACCCCACTGTATTGTGTAATATTCAGGTGTGGCTGCATTAAGGTATCTGC
GACTACATGATGTCCACCTCGTCTGTCGGATGTTCTCCCCTAGCAGCGCT
TCGCACCTTGTACCGCCGAGTGCTCATGTTATGCTGCTGTTGGTCTGGAA
AGTTGGGCAGTTTCTGGGTCTAAATGTTGTTGATTTCGGGTAGGATTACT
GCCATGGTTGCCGCTTTCAGCAGCCAATGGGGAAGGAAGGAGAATTGACG
AGGAGCGGCATCCATTCGGGGCAATTCGCGTGTACGTGAGTGCCGCGCAA
ATACATACATTGAGGAAATCTCGCAGCACTTTGTTATGCTGCTGCTGCTG
CAAACCGTTATGTTGGGTTTGCCTGTGCTGTGTCTTCCACGCAGCAAGCG
GACAAAGGTGTTTTTCTCCAGGCGGATTGTTCTTGTCGTGGCCCGTGGCA
CTGCGGGTGCTGACACAACTGCTGTGGGTCTTGTTGCTGCATCGCGCTTT
CCCGTCCTTCTAAAGCACAAGGCCCCCCTGTTGTCCAGACCGCCCTCGTG
TACCCAAACACACGCCCGCCAGCCTTCATCAGGCTAGTATGTCTCGTGGT
CCCGAAGTTTCCATCCCTGCCGTCACGAAGGATGCCGGCAGCCCCGCGGA
ACGCGTGACATGCCCCGCCAGTAGCCCTCCACTGCAATCGCCGCATCGTG
CCTGGAAGCAGAAATCCTCACCTGTGCGCCTTAACACTTTTACCCCAACC
TTCAAACATACAGCACCGCGGTGAAGGGGCGGAACCCGCCACGGATGGTT
CCAGCCACGCCGAGGGGCGGCGGAAGACCTGCCGGATCACGCGTCACGCG
CTCCGCCGTCAAGGGGGCTCGCACCTCGTCTCGGATGTCGGTAGCGGCGG
AACCGCTGCCGGTTGAAGCAGGAGCGGTGGCGCAGACCCCGACGGGCCGT
GCTAGGGCGGTCGGGGGGCGTGCTATGCGGTCCGCCGTCAAGGGGGGGGG
GGGACCTGGGCGTGACGTCTATCCGCTGTCGACTTCGATCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1425:13972..16964+

>mRNA_Ecto-sp13_S_contig1425.3299.1 ID=mRNA_Ecto-sp13_S_contig1425.3299.1|Name=mRNA_Ecto-sp13_S_contig1425.3299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1425:13972..16964+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTACTCGAGAGTCTTGTCCCTCCCGCTGGTACCCTTCCGTTCCTGCTGGC
CAGGCACCCTTGCCACGTACGCTTCGCTCGTTCTCTCTCTGGGCTGTCGC
GGGAGTCTTGGCATCCTCCTCGGAAGCGCATCATTATGCCTCCTCGACGG
AGTATCAAGAAGAAGGGGCGACTGCAGGAGGCAGAGGCGGCCTCTAAAAG
CATCAAGACCATCTACGACAACGGCCACGCGGCAGATCACCTTGACGAAG
AGGAGGACGTTGGCAGCGGCTGCCCGATTGTGGAGGAGCCATCGACGCGT
GAGGCGCAGACGGAGTATGTTGAACGAATTATCGAAGAGGTCGAAGCGAA
AGCCCGGGAGTGGTGCGATGCAATCATGGACGAGAACGCGTCCAACATCC
GGATGCAGAAGCGAACGCGCGACCGAGTGAAGAACAAGATCAACCGCAAG
TTCCGACATATGAAGCTGTCGGATCTGTGCCACATGTCCGGGAACGACTT
CAACGCGGCGCTGCTGATGGCGGTGCCCCCGGAGGAGCGCGCGGTCTTGC
TGGCGGAGGCCGGGGAGGACGCGGATGAGGACGAGGACGACGAGGAGAAC
ATGCCCACCGCGGTGAAGGGGCGGAACCCGCCACGGATGGTTCCAGCCAC
GCCGAGGGGCGGCGGAAGACCTGCCGGATCACGCGTCACGCGCTCCGCCG
TCAAGGGGGCTCGCACCTCGTCTCGGATGTCGGTAGCGGCGGAACCGCTG
CCGGTTGAAGCAGGAGCGGTGGCGCAGACCCCGACGGGCCGTGCTAGGGC
GGTCGGGGGGCGTGCTATGCGGTCCGCCGTCAAGGGGGGGGGGGGACCTG
GGCGTGACGTCTATCCGCTGTCGACTTCGATCGAG
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