mRNA_Ecto-sp13_S_contig14248.3293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14248.3293.1
Unique NamemRNA_Ecto-sp13_S_contig14248.3293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: W4H6X8_9STRA (Ubiquitin-like protein 5 n=16 Tax=Oomycota TaxID=4762 RepID=W4H6X8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.440e-36
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYY 192
            +L  ++RVKCNEDDT+GDLKKL+AAQVGTRPEKIRIQKWYT+YKDHITLEDYEIHDGMGLE+YY
Sbjct:    9 RLGKKIRVKCNEDDTVGDLKKLVAAQVGTRPEKIRIQKWYTIYKDHITLEDYEIHDGMGLELYY 72
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BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: K3WK93_GLOUD (Ubiquitin-like domain-containing protein n=17 Tax=Eukaryota TaxID=2759 RepID=K3WK93_GLOUD)

HSP 1 Score: 125 bits (315), Expect = 1.440e-36
Identity = 55/64 (85.94%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYY 192
            +L  ++RVKCNEDDT+GDLKKL+AAQVGTRPEKIRIQKWYT+YKDHITLEDYEIHDGMGLE+YY
Sbjct:    9 RLGKKIRVKCNEDDTVGDLKKLVAAQVGTRPEKIRIQKWYTIYKDHITLEDYEIHDGMGLELYY 72
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BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: A0A2C9V1D7_MANES (Ubiquitin-like domain-containing protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A2C9V1D7_MANES)

HSP 1 Score: 125 bits (315), Expect = 1.440e-36
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYYN 195
            +L  +VRVKCNEDDTIGDLKKL+AAQ GTRPEKIRIQKWYT+YKDHITL+DYEIHDGMGLE+YYN
Sbjct:    9 RLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLKDYEIHDGMGLELYYN 73
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: A0A251SJS4_HELAN (Putative ubiquitin-related domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=A0A251SJS4_HELAN)

HSP 1 Score: 125 bits (313), Expect = 2.910e-36
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYYN 195
            +L  +VRVKCNEDDTIGDLKKL+AAQ GTRP+KIRIQKWYT+YKDHITL+DYEIHDGMGLE+YYN
Sbjct:    9 RLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPDKIRIQKWYTIYKDHITLQDYEIHDGMGLELYYN 73
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: A8J6M2_CHLRE (Predicted protein n=16 Tax=Viridiplantae TaxID=33090 RepID=A8J6M2_CHLRE)

HSP 1 Score: 125 bits (313), Expect = 2.910e-36
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYYN 195
            +L  +VRVKCNEDDTIGDLKKL+AAQ GTRPEKIRIQKWYT+YKDHITL DYEIHDGMGLE+YYN
Sbjct:    9 RLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLADYEIHDGMGLELYYN 73
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: A0A0G4IC47_9ALVE (Ubiquitin-like domain-containing protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0G4IC47_9ALVE)

HSP 1 Score: 123 bits (309), Expect = 1.190e-35
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYYN 195
            +L  ++RVKCN DDTIGDLKKL+AAQ GTRP+KIRIQKWYT+YKDHITLEDYEIHDGMGLE+YYN
Sbjct:    9 RLGKKIRVKCNPDDTIGDLKKLVAAQTGTRPDKIRIQKWYTIYKDHITLEDYEIHDGMGLELYYN 73
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: A0A6A3FTZ9_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FTZ9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.600e-35
Identity = 54/64 (84.38%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYY 192
            +L  ++RVKCNEDDT+GDLKKL+AAQVGTRP+KIRIQKWYT+YKDHITLEDYEIHDGMGLE+YY
Sbjct:    9 RLGKKIRVKCNEDDTVGDLKKLVAAQVGTRPQKIRIQKWYTIYKDHITLEDYEIHDGMGLELYY 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: B9S0L3_RICCO (Ubiquitin-like domain-containing protein n=18 Tax=Mesangiospermae TaxID=1437183 RepID=B9S0L3_RICCO)

HSP 1 Score: 122 bits (307), Expect = 2.400e-35
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYYN 195
            +L  +VRVKCNEDDTIGDLKKL+AAQ GTR EKIRIQKWYT+YKDHITL+DYEIHDGMGLE+YYN
Sbjct:    9 RLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLKDYEIHDGMGLELYYN 73
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: A0A803N8L2_CHEQI (Ubiquitin-like domain-containing protein n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A803N8L2_CHEQI)

HSP 1 Score: 122 bits (307), Expect = 2.400e-35
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYYN 195
            +L  +VRVKCN+DDTIGDLKKL+AAQ GTR EKIRIQKWYT+YKDHITLEDYEIHDGMGLE+YYN
Sbjct:    9 RLGKKVRVKCNKDDTIGDLKKLVAAQTGTRAEKIRIQKWYTIYKDHITLEDYEIHDGMGLELYYN 73
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Match: A0A7J6RH60_PEROL (Ubiquitin-like 5 n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RH60_PEROL)

HSP 1 Score: 123 bits (309), Expect = 2.600e-35
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLEDYEIHDGMGLEMYYN 195
            +L  ++RVKCN DDTIGDLKKL+AAQ+GTRPEKIRIQKWYTVYKDHITL DYEIHDGMGLE+YYN
Sbjct:   36 RLGKKIRVKCNPDDTIGDLKKLLAAQIGTRPEKIRIQKWYTVYKDHITLADYEIHDGMGLELYYN 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14248.3293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4H6X8_9STRA1.440e-3685.94Ubiquitin-like protein 5 n=16 Tax=Oomycota TaxID=4... [more]
K3WK93_GLOUD1.440e-3685.94Ubiquitin-like domain-containing protein n=17 Tax=... [more]
A0A2C9V1D7_MANES1.440e-3686.15Ubiquitin-like domain-containing protein n=3 Tax=M... [more]
A0A251SJS4_HELAN2.910e-3684.62Putative ubiquitin-related domain-containing prote... [more]
A8J6M2_CHLRE2.910e-3686.15Predicted protein n=16 Tax=Viridiplantae TaxID=330... [more]
A0A0G4IC47_9ALVE1.190e-3583.08Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A6A3FTZ9_9STRA1.600e-3584.38Ubiquitin-like domain-containing protein n=2 Tax=P... [more]
B9S0L3_RICCO2.400e-3584.62Ubiquitin-like domain-containing protein n=18 Tax=... [more]
A0A803N8L2_CHEQI2.400e-3584.62Ubiquitin-like domain-containing protein n=3 Tax=P... [more]
A0A7J6RH60_PEROL2.600e-3584.62Ubiquitin-like 5 n=2 Tax=Perkinsus olseni TaxID=32... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14248contigEcto-sp13_S_contig14248:1044..1675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score131.7
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog2880.D8LKK7
Preferred nameUBL5
Model size198
KEGG rclassRC00002,RC00078
KEGG koko:K00948,ko:K10643,ko:K13113,ko:K20524
KEGG ReactionR01049
KEGG Pathwayko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03018,ko04212,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230,map03018,map04212
KEGG ModuleM00005
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000746,GO:0000747,GO:0000753,GO:0000767,GO:0000902,GO:0002682,GO:0002684,GO:0003006,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005737,GO:0005829,GO:0005937,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006986,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019538,GO:0019953,GO:0022414,GO:0023051,GO:0023056,GO:0031347,GO:0031349,GO:0031386,GO:0032502,GO:0032989,GO:0032991,GO:0033554,GO:0034121,GO:0034123,GO:0034124,GO:0034126,GO:0034514,GO:0034620,GO:0034641,GO:0035966,GO:0035967,GO:0036211,GO:0042221,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0044798,GO:0045088,GO:0045089,GO:0045292,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071840,GO:0080134,GO:0090304,GO:0120025,GO:1901360,GO:1901564
Exons2
EggNOG free text desc.protein tag
EggNOG OGsKOG3493@1,KOG3493@2759
Ec32 ortholog descriptionUbiquitin like protein 5
Ec32 orthologEc-16_003320.1
EC2.3.2.27,2.7.6.1
Cds size198
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462761.405676-CDS-Ecto-sp13_S_contig14248:1043..11751681462761.405676-CDS-Ecto-sp13_S_contig14248:1043..1175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14248 1044..1175 +
1681462761.418683-CDS-Ecto-sp13_S_contig14248:1609..16751681462761.418683-CDS-Ecto-sp13_S_contig14248:1609..1675Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14248 1610..1675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14248.3293.1prot_Ecto-sp13_S_contig14248.3293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14248 1044..1675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14248.3293.1

>prot_Ecto-sp13_S_contig14248.3293.1 ID=prot_Ecto-sp13_S_contig14248.3293.1|Name=mRNA_Ecto-sp13_S_contig14248.3293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
KLNTQVRVKCNEDDTIGDLKKLIAAQVGTRPEKIRIQKWYTVYKDHITLE
DYEIHDGMGLEMYYN*
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mRNA from alignment at Ecto-sp13_S_contig14248:1044..1675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14248.3293.1 ID=mRNA_Ecto-sp13_S_contig14248.3293.1|Name=mRNA_Ecto-sp13_S_contig14248.3293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=632bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14248:1044..1675+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAATTAAATACACAGGTGAGGGTGAAGTGCAACGAAGATGACACAATAGG
GGACCTGAAGAAGCTCATAGCCGCGCAGGTCGGCACCCGACCAGAGAAGA
TCCGGATCCAGAAGTGGTACACCGTCTACAAGGTGGGGTCACCGAACGCT
TCTTTCTGTCGCTCGTGTCTTCCATTCTGCAGCTCTAGGTACTACAGTAG
TGAGAGCCATGTGTCTTCGATTTCTACAGCTGTAGTACTCGTCATTGGAG
CAACTAGTCTGCTGATGCATATCTCTTGCGGAGCACAGCGGCCAGTCTCC
CACGATCAGAGAGGATTCCGCTCGAGCATTGGGGGAAACAACCAAAGGCG
TTCTCCCACGTACGCGGCGAGCCAGGCCGTACGCTTGCCGTTGTCATTTC
AGACAACAACACCCTTGGCGGGACATTTGGCTCTGCTATATTTCCTCCGT
CTACCCTCGCCAAATCTGTTCCACGTTGCTGCCCTACCCTCACCCTCGGT
TGCTGCTGCTGCTGCTGCGGCTGCTTCTGTGCCCTTCCTGTCCGTCTATG
AATTCCCGCGCTTTAGGACCACATTACCCTTGAAGACTACGAGATCCACG
ACGGCATGGGATTGGAAATGTACTACAACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14248:1044..1675+

>mRNA_Ecto-sp13_S_contig14248.3293.1 ID=mRNA_Ecto-sp13_S_contig14248.3293.1|Name=mRNA_Ecto-sp13_S_contig14248.3293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14248:1044..1675+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAATTAAATACACAGGTGAGGGTGAAGTGCAACGAAGATGACACAATAGG
GGACCTGAAGAAGCTCATAGCCGCGCAGGTCGGCACCCGACCAGAGAAGA
TCCGGATCCAGAAGTGGTACACCGTCTACAAGGACCACATTACCCTTGAA
GACTACGAGATCCACGACGGCATGGGATTGGAAATGTACTACAACTAG
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