mRNA_Ecto-sp13_S_contig14242.3291.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14242.3291.1
Unique NamemRNA_Ecto-sp13_S_contig14242.3291.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14242.3291.1 vs. uniprot
Match: D8LQK1_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQK1_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 7.700e-108
Identity = 164/208 (78.85%), Postives = 169/208 (81.25%), Query Frame = 1 
Query:    1 AFLFGSGGQLGITEFSWNPTDKMGDHTRSECQANFPGRRCFGQQFVPFVTADYWIPQTGVFANPNSYNISTDLPHALEVVDAMVYEPQAHNPQWPSYSQTCLGDAIKYTADMAQAVKNDQTRAALPDRQEIGGPHTGDFDPDDYVLDLEDFASLDDSFAGELVSRISIACANNVEISVIVSTAAGVPTALECEGETCAADGSTLTWNI 624
            AFLFGSGGQLGITEFSWNPTDK GD T+SEC+ANFPGRRCFGQQFVPFVTAD WIP                                 H+PQWPSYSQTCLGDAIKYTADMAQAVKNDQTRAALPDRQEIGGPHTGDFD DDYVLDLEDFASLDDSFAGELVSRISIACANNVEI+V+VS AAGVPTALECEGETC ADGSTLTWNI
Sbjct:  106 AFLFGSGGQLGITEFSWNPTDKTGDPTQSECRANFPGRRCFGQQFVPFVTADNWIPH--------------------------------HDPQWPSYSQTCLGDAIKYTADMAQAVKNDQTRAALPDRQEIGGPHTGDFDSDDYVLDLEDFASLDDSFAGELVSRISIACANNVEIAVVVSAAAGVPTALECEGETCTADGSTLTWNI 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14242.3291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQK1_ECTSI7.700e-10878.85VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14242contigEcto-sp13_S_contig14242:700..4468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size624
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionvon Willebrand factor, type A
Ec32 orthologEc-10_006000.1
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462761.2377238-CDS-Ecto-sp13_S_contig14242:699..8691681462761.2377238-CDS-Ecto-sp13_S_contig14242:699..869Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14242 700..869 +
1681462761.2488778-CDS-Ecto-sp13_S_contig14242:1860..19561681462761.2488778-CDS-Ecto-sp13_S_contig14242:1860..1956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14242 1861..1956 +
1681462761.2639346-CDS-Ecto-sp13_S_contig14242:2479..26001681462761.2639346-CDS-Ecto-sp13_S_contig14242:2479..2600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14242 2480..2600 +
1681462761.2725713-CDS-Ecto-sp13_S_contig14242:3836..40501681462761.2725713-CDS-Ecto-sp13_S_contig14242:3836..4050Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14242 3837..4050 +
1681462761.280326-CDS-Ecto-sp13_S_contig14242:4445..44681681462761.280326-CDS-Ecto-sp13_S_contig14242:4445..4468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14242 4446..4468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14242.3291.1prot_Ecto-sp13_S_contig14242.3291.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14242 700..4468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14242.3291.1

>prot_Ecto-sp13_S_contig14242.3291.1 ID=prot_Ecto-sp13_S_contig14242.3291.1|Name=mRNA_Ecto-sp13_S_contig14242.3291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
AFLFGSGGQLGITEFSWNPTDKMGDHTRSECQANFPGRRCFGQQFVPFVT
ADYWIPQTGVFANPNSYNISTDLPHALEVVDAMVYEPQAHNPQWPSYSQT
CLGDAIKYTADMAQAVKNDQTRAALPDRQEIGGPHTGDFDPDDYVLDLED
FASLDDSFAGELVSRISIACANNVEISVIVSTAAGVPTALECEGETCAAD
GSTLTWNI
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mRNA from alignment at Ecto-sp13_S_contig14242:700..4468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14242.3291.1 ID=mRNA_Ecto-sp13_S_contig14242.3291.1|Name=mRNA_Ecto-sp13_S_contig14242.3291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3769bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14242:700..4468+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCCTGTTTGGGTCCGGTGGGCAGCTCGGAATAACGGAGTTCAGCTG
GAATCCCACGGACAAAATGGGGGACCACACGCGAAGCGAATGCCAAGCAA
ACTTTCCAGGGCGGAGGTGTTTCGGCCAACAATTCGTACCATTCGTAACA
GCGGACTACTGGATCCCACAGTGAGTGTTCCGAAACTCTCCTTTGACCAT
GAGCTGTGCTCTCGTGAGTTGCGTTCCATCGCCATTTTTTGGCACCGGTC
TGCTGTTGCTGACACTGGTCCGTTCATTTTTGGACGTTCACCGGGCCGAT
TAAAACACAAAGCGCACTTTGTCGACAATCATCTTATTCGAGGAAATTCC
GATTTATGAGGTTGGGTCAAGGTGTGGCCGTAAGTGTTCGAAGCCATCCA
TGGTCCTATATGCAAATCTACCCTGTTGGTACGTCAAGCACCGTCCGGCA
CCGCTGACCACCGGGGCCGATCTATCTCCTCCAATTTTCCCACCACGGAG
AGGTTACTCATGGCCAACATTACATCGTATTGGACTTTGTTGAGTAAGCC
GGCATCAACGCGAGGGCTGTGTGTGGGTTGCGAAATCTCGCGCAGCGCGT
GGGCTGGAAGCTTGTGACGTATTTACCTGACATGTACCAGGTAGCCTCTG
GAGAGTCATTCGGAGATCTGGCAATCGTGTTGAGCGTCTATCAGCGAAGC
TTTCGGTACAAAAGCTACCACTTGAGGACAAAATCGGTTGCGGGCAGCAC
AAAGGCCGACAAAACTTCAAAAATAGCTGGCCGAAATAATTGAAGCGCGC
CGGCAAGACGAAAAATATCAGTCATCCGATATCACTTCAAAGAGCATTGG
AAACATTTTTTTCTTCGCGGCAGATAACGTACAACGTGCTTGGAAAAATC
AACTACCGGGGTTCCAATGACGGAGCTTCGTGTTCTCAAGAGGCGAACTC
CTGGAGACGTTTGTGGTTTCCGTCTGACACTGGGAAGTACATTGTGGTTG
GAGAAAGCCTCCTCTCCCGCTGCTCGCGAAACTCGGGGAACAGCATGCAT
AGATTGACCCTCACCCATATGTTGCACTTGGGACCCTGCTATACCTTTCG
GGACCAAATGAAAGAATCGCGTCATTGGCACTTGCTCTGTTCCTTCTGAC
ACGAACACCAGGACTGGAGTATTTGCGAACCCCAACTCGTACAACATCTC
GACAGACTTGCCGCACGCCTTGGAAGTGGTGGACGCCATGGTCTACGAAC
CCCAAGCGTAGGTTCATGCGTCTTGGTCTGAGCTCTTCGTCCATCTTACC
GTGCACAGTTCGGATAGATGTGTTTTTAGCCGTTTGTCTCCAATATTGAC
AGCACATTATCCTCTCCCCTCGGCATACGAGATTGCTTCTCTCATTTGTG
ATTTCGACAAGAAAATACTCCACAGTAGCTGTTTAACGTTGTTGTCAGTT
AGGCTTATCTCGGGATCAGGTTACATGTGTATTCGCGTGTGCGAAGGGCC
TTGGCATCGTTTGTTTCCACCACCTATGCTTTTGTCATTAGGCGAGGCGG
GCACCAGGTGCTTTCTAACGGATACGTGAGGCTTGGCCGTTGTTGATTCT
CCCCACCCTACGACCGGTTCGGAAATAGTCTCTGAATTTCCACGTGCTCG
ATTGACGCTCCACTAAGATTTCGTCCTATCTATAAAAAACAAGACACGCA
CACACTACGATTGTTTGAAGGGTTACCTTGTTTTCGGCGTTCCATGCTTG
TTGCTACACCCTACCAATGAACGGAAACAGTCATAATCCACAGTGGCCAT
CTTACTCCCAGACGTGTCTGGGAGACGCCATCAAGTACACAGCTGACATG
GCGCAAGCCGTTAAGAACGACCAGACCAGAGCTGCTCTTCCTGATAGACA
GGTGGGACACATTTCAAATAGAAATTACTCTTCGCGTCTCCTGGTCCCCG
TAGGAACAGCGTGCAGTTTGTAGCCTAGCCTCCATGGTCGATTCGCCCGG
AATTCTTCAAGCGTCGCCATCTATGTATACCTGTGTGTACCGTCGCGTGA
TGTCACCATGTGCAGCAGAGGTAATCATGTTTGGTACCATGTTTGGTATG
CACATCGCATGCATGGGCATGTAAAGTCTGAAGAGAGCATAAGGAACCAT
GGCTACGCTCGCGCCATGTGTCGATAGAACGACCTTCAAATAGTCGGGAA
AAAGAGCACACTCGCTCTGTTGGATCTACACAACACTGACTGAGGTAGAA
CTGGAATACACAAGCGGGTTGCTCAATAAGTGGTTGATGAAATTCCACAT
AGACTGCAAACCTTAGTGCTCGATTGGTATGATTGGCCCGATGTCCCGGC
CGGTCCAACTTGCCGACGGCCTCGCTGAAATCTCTGTACGGCGTGTGTAT
GGCGTGTTAGCCTCTGTGTTTGTTTCCTGGATGCTGTCGCTCTGCCTTCC
TGTACCGGCTTGTTGCTCAACCGCACGGCTAAAGCAACCAGGCGTTGTGC
CTTCAATCGCATGAACTCTTGTGCACTGATCAAGGTCATGTTGGTGATCA
CGGATGGGGACAACAACGCGGGGGAGTACTTGCCGTCGGATGCATCCGAC
ATAGCCCGTGGCTACGGAATTGATATGTACGCAATAGGAATTGGGGGCAA
CATTCAACACACGCAACAACAGGTTCGTGGGCCGAGGTCTGCTCGGCGTC
AACACTTGGGGTTGTGGTCGACAAAGAGTATGCTAACGACAACACGATAT
AGTGGGCAAACAGGGACTTGGGCATTGCACGCGTTGTTCCGTCTATTTGG
TCAAGCGTACACTCGATAGAAATCTTAAAATGTGAAGACATCCATGGCTC
GAATTGTCTCGGAGCCACAAGCTCACCTGAGGCCCTAGCATTTTGTCTCC
GTAAAAGGATAAATTTTGTTCTCGCGAGTAAACGCGAGCTGGAGGATGTT
CTTGCAGTGCAGGATTGCTGTCGCTGTCGCTGTTGTTGTTGCCGTTGCGG
CCTTGGCACTGGAATACCTTTCACCCCCGTGAGGGATTATGTTGCTCGTG
GTCCCAAGCCAACACAAATGAAACTTATAGGAATGGGAACAGGGTCTTGA
AACTCCTACCACTTGAACATGCCTGAACCCGTATCAGGAAATCGGCGGCC
CACATACAGGGGATTTCGACCCTGATGACTACGTCTTGGATCTGGAAGAC
TTCGCCAGTTTGGACGATAGCTTCGCTGGGGAGCTCGTAAGCCGCATTTC
GATAGCGTGTGCGAACAACGTGGAGATTTCGGTGATTGTTTCGACCGCTG
CGGGCGTCCCGACGGCCTTAGAGTGCGAGGGCGAGACGTGCGCGGCCGAC
GGTGAGGCGATTCATGTTGTTCAAACGAAGGAGGGGGCACCTGCTGCTGG
AAGAGTGCATTTGTAGTGTTGGTCACAACTACCGTGTATCCATGTACTCG
AAACCTCTTCGACGGGGGTTAACATTAATTGGTACATAGTAGACACACGT
CGCGGTTGGTTGGCCAGCTGGTTTTGCCGTTGGTGTTGTGGTGGATGATG
GTTCTCACACAAGCTCACCACAGATGATCTAAGCCGTGGACCAATAAGTG
GTGGAGCCGTCGGAAGAACCGAACAAAAATTTCAATGAAAGACAAGATGC
AGAGACGGAACAAGGTACACAGATGACAATTATTTGGTTAGCGACAAAAA
CGCTAATCCCCCCCTACCCTGTGTGTGACCAATACGTCCTGGGCAGGATC
TACCCTAACGTGGAACATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14242:700..4468+

>mRNA_Ecto-sp13_S_contig14242.3291.1 ID=mRNA_Ecto-sp13_S_contig14242.3291.1|Name=mRNA_Ecto-sp13_S_contig14242.3291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14242:700..4468+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCCTGTTTGGGTCCGGTGGGCAGCTCGGAATAACGGAGTTCAGCTG
GAATCCCACGGACAAAATGGGGGACCACACGCGAAGCGAATGCCAAGCAA
ACTTTCCAGGGCGGAGGTGTTTCGGCCAACAATTCGTACCATTCGTAACA
GCGGACTACTGGATCCCACAGACTGGAGTATTTGCGAACCCCAACTCGTA
CAACATCTCGACAGACTTGCCGCACGCCTTGGAAGTGGTGGACGCCATGG
TCTACGAACCCCAAGCTCATAATCCACAGTGGCCATCTTACTCCCAGACG
TGTCTGGGAGACGCCATCAAGTACACAGCTGACATGGCGCAAGCCGTTAA
GAACGACCAGACCAGAGCTGCTCTTCCTGATAGACAGGAAATCGGCGGCC
CACATACAGGGGATTTCGACCCTGATGACTACGTCTTGGATCTGGAAGAC
TTCGCCAGTTTGGACGATAGCTTCGCTGGGGAGCTCGTAAGCCGCATTTC
GATAGCGTGTGCGAACAACGTGGAGATTTCGGTGATTGTTTCGACCGCTG
CGGGCGTCCCGACGGCCTTAGAGTGCGAGGGCGAGACGTGCGCGGCCGAC
GGATCTACCCTAACGTGGAACATT
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